Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:29172488-29375446

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prrt4 6 29169232 to 29179584 10352 - protein coding gene proline-rich transmembrane protein 4
Cpgi17224 6 29178667 to 29179828 1161 CpG island CpG island 17224
Impdh1 6 29200436 to 29216364 15928 - protein coding gene inosine monophosphate dehydrogenase 1
Tssr60073 6 29201157 to 29201169 12 - TSS region transcription start site region 60073
Cpgi17225 6 29211550 to 29212678 1128 CpG island CpG island 17225
Tssr60074 6 29212240 to 29212291 51 - TSS region transcription start site region 60074
Tssr60075 6 29212296 to 29212313 17 - TSS region transcription start site region 60075
Tssr55214 6 29212405 to 29212427 22 + TSS region transcription start site region 55214
Tssr60076 6 29212455 to 29212468 13 - TSS region transcription start site region 60076
D6Mit180 6 29212798 to 29212915 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 180
Cpgi17226 6 29215434 to 29216662 1228 CpG island CpG island 17226
Tssr60077 6 29216277 to 29216292 15 - TSS region transcription start site region 60077
Tssr60078 6 29216301 to 29216335 34 - TSS region transcription start site region 60078
Tssr60079 6 29216342 to 29216354 12 - TSS region transcription start site region 60079
Tssr55215 6 29216472 to 29216502 30 + TSS region transcription start site region 55215
Tssr60080 6 29232004 to 29232014 10 - TSS region transcription start site region 60080
Gm26021 6 29234434 to 29234564 130 + snoRNA gene predicted gene, 26021
Tssr60081 6 29245789 to 29245801 12 - TSS region transcription start site region 60081
Tssr55216 6 29246034 to 29246065 31 + TSS region transcription start site region 55216
Tssr55217 6 29246175 to 29246184 9 + TSS region transcription start site region 55217
Tssr55218 6 29248645 to 29248661 16 + TSS region transcription start site region 55218
Tssr60082 6 29250030 to 29250052 22 - TSS region transcription start site region 60082
Gm40358 6 29250291 to 29264959 14668 - lncRNA gene predicted gene, 40358
Tssr60083 6 29260843 to 29260862 19 - TSS region transcription start site region 60083
Tssr55219 6 29271295 to 29271311 16 + TSS region transcription start site region 55219
Tssr55220 6 29271330 to 29271380 50 + TSS region transcription start site region 55220
Cpgi17227 6 29272341 to 29272911 570 CpG island CpG island 17227
Tssr55221 6 29272409 to 29272431 22 + TSS region transcription start site region 55221
Tssr55222 6 29272436 to 29272462 26 + TSS region transcription start site region 55222
Tssr55223 6 29272464 to 29272502 38 + TSS region transcription start site region 55223
Hilpda 6 29272488 to 29275446 2958 + protein coding gene hypoxia inducible lipid droplet associated
Tssr60084 6 29272492 to 29272506 14 - TSS region transcription start site region 60084
Tssr60085 6 29272540 to 29272550 10 - TSS region transcription start site region 60085
Tssr60086 6 29272552 to 29272563 11 - TSS region transcription start site region 60086
Tssr55224 6 29272619 to 29272628 9 + TSS region transcription start site region 55224
Tssr55225 6 29272665 to 29272682 17 + TSS region transcription start site region 55225
Tssr55226 6 29272684 to 29272730 46 + TSS region transcription start site region 55226
Tssr55227 6 29279587 to 29279599 12 + TSS region transcription start site region 55227
Fam71f2 6 29279593 to 29290680 11087 + protein coding gene family with sequence similarity 71, member F2
Tssr60087 6 29280986 to 29280995 9 - TSS region transcription start site region 60087
Tssr60088 6 29281028 to 29281037 9 - TSS region transcription start site region 60088
Tssr55228 6 29281138 to 29281148 10 + TSS region transcription start site region 55228
Tssr55229 6 29281179 to 29281184 5 + TSS region transcription start site region 55229
D6Mit267 6 29302648 to 29302764 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 267
4930445G23Rik 6 29310771 to 29312222 1451 unclassified gene RIKEN cDNA 4930445G23 gene
Tssr55230 6 29313457 to 29313472 15 + TSS region transcription start site region 55230
Tssr55231 6 29313475 to 29313491 16 + TSS region transcription start site region 55231
Tssr55232 6 29313507 to 29313541 34 + TSS region transcription start site region 55232
Tssr55233 6 29319133 to 29319153 20 + TSS region transcription start site region 55233
Fam71f1 6 29319140 to 29336019 16879 + protein coding gene family with sequence similarity 71, member F1
Tssr55234 6 29319191 to 29319194 3 + TSS region transcription start site region 55234
Tssr55235 6 29319229 to 29319237 8 + TSS region transcription start site region 55235
Tssr55236 6 29319246 to 29319251 5 + TSS region transcription start site region 55236
Tssr55237 6 29319261 to 29319272 11 + TSS region transcription start site region 55237
Tssr55238 6 29319273 to 29319284 11 + TSS region transcription start site region 55238
Gm17172 6 29322804 to 29323206 402 - antisense lncRNA gene predicted gene 17172
Tssr55239 6 29323288 to 29323333 45 + TSS region transcription start site region 55239
Cpgi17228 6 29335664 to 29335829 165 CpG island CpG island 17228
Cpgi17229 6 29347529 to 29348526 997 CpG island CpG island 17229
Calu 6 29348106 to 29376675 28569 + protein coding gene calumenin
Tssr55240 6 29348114 to 29348123 9 + TSS region transcription start site region 55240
Tssr55241 6 29348136 to 29348142 6 + TSS region transcription start site region 55241
Tssr55242 6 29348143 to 29348159 16 + TSS region transcription start site region 55242
Tssr55243 6 29348163 to 29348165 2 + TSS region transcription start site region 55243
Tssr55244 6 29348175 to 29348184 9 + TSS region transcription start site region 55244
Tssr55245 6 29361410 to 29361425 15 + TSS region transcription start site region 55245
Tssr55246 6 29366117 to 29366134 17 + TSS region transcription start site region 55246
Tssr55247 6 29374477 to 29374480 3 + TSS region transcription start site region 55247