Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:28423294-29123297

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59 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi17216 6 28423230 to 28424333 1103 CpG island CpG island 17216
Tssr55189 6 28423534 to 28423537 3 + TSS region transcription start site region 55189
Tssr55190 6 28423539 to 28423640 101 + TSS region transcription start site region 55190
Arf5 6 28423640 to 28426499 2859 + protein coding gene ADP-ribosylation factor 5
Tssr55191 6 28424337 to 28424349 12 + TSS region transcription start site region 55191
Tssr55192 6 28424572 to 28424589 17 + TSS region transcription start site region 55192
Tssr55193 6 28426233 to 28426265 32 + TSS region transcription start site region 55193
Tssr55194 6 28426294 to 28426320 26 + TSS region transcription start site region 55194
Tssr55195 6 28426343 to 28426354 11 + TSS region transcription start site region 55195
Tssr55196 6 28426379 to 28426390 11 + TSS region transcription start site region 55196
Tssr55197 6 28426492 to 28426501 9 + TSS region transcription start site region 55197
Fscn3 6 28427789 to 28438622 10833 + protein coding gene fascin actin-bundling protein 3
Tssr55198 6 28427882 to 28427909 27 + TSS region transcription start site region 55198
Tssr55199 6 28427918 to 28427925 7 + TSS region transcription start site region 55199
Pax4 6 28442334 to 28449340 7006 - protein coding gene paired box 4
Cpgi17217 6 28451265 to 28451680 415 CpG island CpG island 17217
Gm43264 6 28465565 to 28466981 1416 - pseudogene predicted gene 43264
Tssr55200 6 28475101 to 28475121 20 + TSS region transcription start site region 55200
Cpgi17218 6 28479704 to 28481099 1395 CpG island CpG island 17218
Snd1 6 28480315 to 28935162 454847 + protein coding gene staphylococcal nuclease and tudor domain containing 1
Tssr55201 6 28480337 to 28480370 33 + TSS region transcription start site region 55201
Tssr55202 6 28480386 to 28480413 27 + TSS region transcription start site region 55202
Tssr1796 6 28522226 to 28522229 3 + TSS region transcription start site region 1796
Tssr55203 6 28556383 to 28556385 2 + TSS region transcription start site region 55203
Gm37321 6 28563490 to 28565361 1871 + unclassified gene predicted gene, 37321
Gm37978 6 28568072 to 28570986 2914 + unclassified gene predicted gene, 37978
Tssr55204 6 28587424 to 28587435 11 + TSS region transcription start site region 55204
Tssr55205 6 28624490 to 28624496 6 + TSS region transcription start site region 55205
Tssr55206 6 28645398 to 28645409 11 + TSS region transcription start site region 55206
Tssr60061 6 28696564 to 28696565 1 - TSS region transcription start site region 60061
Tssr55207 6 28754728 to 28754750 22 + TSS region transcription start site region 55207
Tssr55208 6 28773294 to 28773297 3 + TSS region transcription start site region 55208
D6Mit160 6 28785954 to 28786085 131 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 160
Gm37940 6 28796463 to 28799713 3250 + unclassified gene predicted gene, 37940
Lrrc4 6 28828126 to 28831747 3621 - protein coding gene leucine rich repeat containing 4
Cpgi17219 6 28831396 to 28834050 2654 CpG island CpG island 17219
Tssr60062 6 28831941 to 28831977 36 - TSS region transcription start site region 60062
Tssr60063 6 28833049 to 28833067 18 - TSS region transcription start site region 60063
Tssr60064 6 28833415 to 28833461 46 - TSS region transcription start site region 60064
Tssr60065 6 28867700 to 28867732 32 - TSS region transcription start site region 60065
Tssr55209 6 28867854 to 28867861 7 + TSS region transcription start site region 55209
Tssr55210 6 28888474 to 28888505 31 + TSS region transcription start site region 55210
Tssr55211 6 28888574 to 28888577 3 + TSS region transcription start site region 55211
Tssr1797 6 28929525 to 28929529 4 - TSS region transcription start site region 1797
Gm38779 6 28957388 to 28966041 8653 - lncRNA gene predicted gene, 38779
Gm40357 6 28964805 to 28966412 1607 + lncRNA gene predicted gene, 40357
Cpgi17220 6 28980826 to 28981876 1050 CpG island CpG island 17220
Tssr55212 6 28981490 to 28981526 36 + TSS region transcription start site region 55212
Gm3294 6 28981634 to 29028922 47288 + lincRNA gene predicted gene 3294
Mir129-1 6 29022619 to 29022691 72 + miRNA gene microRNA 129-1
Cpgi17221 6 29024009 to 29024471 462 CpG island CpG island 17221
Tssr60066 6 29026178 to 29026182 4 - TSS region transcription start site region 60066
Tssr60067 6 29028312 to 29028335 23 - TSS region transcription start site region 60067
Lnclep 6 29030954 to 29039527 8573 + lncRNA gene long noncoding RNA upstream of leptin
Tssr55213 6 29060217 to 29060223 6 + TSS region transcription start site region 55213
Lep 6 29060220 to 29073877 13657 + protein coding gene leptin
Gm25589 6 29113441 to 29113606 165 - snRNA gene predicted gene, 25589
Cia6a 6 29117972 to 29118070 98 QTL collagen induced arthritis QTL 6a
D6Mit307 6 29117972 to 29118070 98 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 307