Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:28078163-30618165

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438 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Grm8 6 27275119 to 28135178 860059 - protein coding gene glutamate receptor, metabotropic 8
Cpgi17208 6 28133763 to 28133950 187 CpG island CpG island 17208
Tssr60019 6 28133904 to 28133934 30 - TSS region transcription start site region 60019
Tssr60020 6 28134355 to 28134385 30 - TSS region transcription start site region 60020
Cpgi17209 6 28134889 to 28136059 1170 CpG island CpG island 17209
Tssr60021 6 28135081 to 28135111 30 - TSS region transcription start site region 60021
Cpgi17210 6 28202523 to 28202853 330 CpG island CpG island 17210
Gm42547 6 28211008 to 28214805 3797 - unclassified gene predicted gene 42547
Tssr60022 6 28212896 to 28212897 1 - TSS region transcription start site region 60022
Tssr60023 6 28213252 to 28213270 18 - TSS region transcription start site region 60023
Tssr60024 6 28213821 to 28213836 15 - TSS region transcription start site region 60024
Cpgi17211 6 28214877 to 28215870 993 CpG island CpG island 17211
6530409C15Rik 6 28215555 to 28260862 45307 + antisense lncRNA gene RIKEN cDNA 6530409C15 gene
Gm42549 6 28219167 to 28226170 7003 - unclassified gene predicted gene 42549
Tssr60025 6 28228180 to 28228228 48 - TSS region transcription start site region 60025
Gm42548 6 28233081 to 28237013 3932 - unclassified gene predicted gene 42548
Tssr60026 6 28235109 to 28235118 9 - TSS region transcription start site region 60026
Tssr60027 6 28236766 to 28236770 4 - TSS region transcription start site region 60027
Tssr60028 6 28238798 to 28238826 28 - TSS region transcription start site region 60028
Tssr60029 6 28239296 to 28239299 3 - TSS region transcription start site region 60029
Zfp800 6 28239927 to 28398005 158078 - protein coding gene zinc finger protein 800
Tssr60030 6 28242333 to 28242345 12 - TSS region transcription start site region 60030
Tssr60031 6 28242373 to 28242388 15 - TSS region transcription start site region 60031
Tssr60032 6 28243769 to 28243789 20 - TSS region transcription start site region 60032
Tssr60033 6 28243794 to 28243805 11 - TSS region transcription start site region 60033
Tssr60034 6 28244221 to 28244262 41 - TSS region transcription start site region 60034
Tssr60035 6 28247135 to 28247144 9 - TSS region transcription start site region 60035
Tssr60036 6 28247213 to 28247224 11 - TSS region transcription start site region 60036
Tssr60037 6 28256496 to 28256538 42 - TSS region transcription start site region 60037
Tssr60038 6 28256565 to 28256576 11 - TSS region transcription start site region 60038
Tssr60039 6 28259235 to 28259238 3 - TSS region transcription start site region 60039
Tssr60040 6 28259922 to 28259936 14 - TSS region transcription start site region 60040
Tssr60041 6 28260032 to 28260034 2 - TSS region transcription start site region 60041
Cpgi17212 6 28260496 to 28262655 2159 CpG island CpG island 17212
Tssr60042 6 28260758 to 28260771 13 - TSS region transcription start site region 60042
Tssr60043 6 28261120 to 28261133 13 - TSS region transcription start site region 60043
Tssr60044 6 28261907 to 28261943 36 - TSS region transcription start site region 60044
Tssr60045 6 28261956 to 28261967 11 - TSS region transcription start site region 60045
Tssr55187 6 28262043 to 28262100 57 + TSS region transcription start site region 55187
Tssr60046 6 28262407 to 28262429 22 - TSS region transcription start site region 60046
Tssr60047 6 28262442 to 28262453 11 - TSS region transcription start site region 60047
Tssr60048 6 28262454 to 28262465 11 - TSS region transcription start site region 60048
Tssr60049 6 28262466 to 28262492 26 - TSS region transcription start site region 60049
Tssr60050 6 28262504 to 28262509 5 - TSS region transcription start site region 60050
Tssr60051 6 28262669 to 28262678 9 - TSS region transcription start site region 60051
Tssr60052 6 28304809 to 28304858 49 - TSS region transcription start site region 60052
Gm5303 6 28361914 to 28363165 1251 - pseudogene predicted gene 5303
Cpgi17213 6 28369343 to 28369616 273 CpG island CpG island 17213
Cpgi17214 6 28397693 to 28398101 408 CpG island CpG island 17214
Tssr60053 6 28397938 to 28397951 13 - TSS region transcription start site region 60053
Tssr60054 6 28397969 to 28397992 23 - TSS region transcription start site region 60054
Tssr60055 6 28397999 to 28398023 24 - TSS region transcription start site region 60055
Tssr60056 6 28398054 to 28398065 11 - TSS region transcription start site region 60056
Tssr60057 6 28398078 to 28398109 31 - TSS region transcription start site region 60057
Gcc1 6 28416603 to 28421724 5121 - protein coding gene golgi coiled coil 1
Cpgi17215 6 28421248 to 28421963 715 CpG island CpG island 17215
Tssr60058 6 28421527 to 28421542 15 - TSS region transcription start site region 60058
Tssr60059 6 28421564 to 28421592 28 - TSS region transcription start site region 60059
Tssr60060 6 28421680 to 28421741 61 - TSS region transcription start site region 60060
Tssr55188 6 28421769 to 28421806 37 + TSS region transcription start site region 55188
Cpgi17216 6 28423230 to 28424333 1103 CpG island CpG island 17216
Tssr55189 6 28423534 to 28423537 3 + TSS region transcription start site region 55189
Tssr55190 6 28423539 to 28423640 101 + TSS region transcription start site region 55190
Arf5 6 28423640 to 28426499 2859 + protein coding gene ADP-ribosylation factor 5
Tssr55191 6 28424337 to 28424349 12 + TSS region transcription start site region 55191
Tssr55192 6 28424572 to 28424589 17 + TSS region transcription start site region 55192
Tssr55193 6 28426233 to 28426265 32 + TSS region transcription start site region 55193
Tssr55194 6 28426294 to 28426320 26 + TSS region transcription start site region 55194
Tssr55195 6 28426343 to 28426354 11 + TSS region transcription start site region 55195
Tssr55196 6 28426379 to 28426390 11 + TSS region transcription start site region 55196
Tssr55197 6 28426492 to 28426501 9 + TSS region transcription start site region 55197
Fscn3 6 28427789 to 28438622 10833 + protein coding gene fascin actin-bundling protein 3
Tssr55198 6 28427882 to 28427909 27 + TSS region transcription start site region 55198
Tssr55199 6 28427918 to 28427925 7 + TSS region transcription start site region 55199
Pax4 6 28442334 to 28449340 7006 - protein coding gene paired box 4
Cpgi17217 6 28451265 to 28451680 415 CpG island CpG island 17217
Gm43264 6 28465565 to 28466981 1416 - pseudogene predicted gene 43264
Tssr55200 6 28475101 to 28475121 20 + TSS region transcription start site region 55200
Cpgi17218 6 28479704 to 28481099 1395 CpG island CpG island 17218
Snd1 6 28480315 to 28935162 454847 + protein coding gene staphylococcal nuclease and tudor domain containing 1
Tssr55201 6 28480337 to 28480370 33 + TSS region transcription start site region 55201
Tssr55202 6 28480386 to 28480413 27 + TSS region transcription start site region 55202
Tssr1796 6 28522226 to 28522229 3 + TSS region transcription start site region 1796
Tssr55203 6 28556383 to 28556385 2 + TSS region transcription start site region 55203
Gm37321 6 28563490 to 28565361 1871 + unclassified gene predicted gene, 37321
Gm37978 6 28568072 to 28570986 2914 + unclassified gene predicted gene, 37978
Tssr55204 6 28587424 to 28587435 11 + TSS region transcription start site region 55204
Tssr55205 6 28624490 to 28624496 6 + TSS region transcription start site region 55205
Tssr55206 6 28645398 to 28645409 11 + TSS region transcription start site region 55206
Tssr60061 6 28696564 to 28696565 1 - TSS region transcription start site region 60061
Tssr55207 6 28754728 to 28754750 22 + TSS region transcription start site region 55207
Tssr55208 6 28773294 to 28773297 3 + TSS region transcription start site region 55208
D6Mit160 6 28785954 to 28786085 131 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 160
Gm37940 6 28796463 to 28799713 3250 + unclassified gene predicted gene, 37940
Lrrc4 6 28828126 to 28831747 3621 - protein coding gene leucine rich repeat containing 4
Cpgi17219 6 28831396 to 28834050 2654 CpG island CpG island 17219
Tssr60062 6 28831941 to 28831977 36 - TSS region transcription start site region 60062
Tssr60063 6 28833049 to 28833067 18 - TSS region transcription start site region 60063
Tssr60064 6 28833415 to 28833461 46 - TSS region transcription start site region 60064
Tssr60065 6 28867700 to 28867732 32 - TSS region transcription start site region 60065
Tssr55209 6 28867854 to 28867861 7 + TSS region transcription start site region 55209
Tssr55210 6 28888474 to 28888505 31 + TSS region transcription start site region 55210
Tssr55211 6 28888574 to 28888577 3 + TSS region transcription start site region 55211
Tssr1797 6 28929525 to 28929529 4 - TSS region transcription start site region 1797
Gm38779 6 28957388 to 28966041 8653 - lncRNA gene predicted gene, 38779
Gm40357 6 28964805 to 28966412 1607 + lncRNA gene predicted gene, 40357
Cpgi17220 6 28980826 to 28981876 1050 CpG island CpG island 17220
Tssr55212 6 28981490 to 28981526 36 + TSS region transcription start site region 55212
Gm3294 6 28981634 to 29028922 47288 + lincRNA gene predicted gene 3294
Mir129-1 6 29022619 to 29022691 72 + miRNA gene microRNA 129-1
Cpgi17221 6 29024009 to 29024471 462 CpG island CpG island 17221
Tssr60066 6 29026178 to 29026182 4 - TSS region transcription start site region 60066
Tssr60067 6 29028312 to 29028335 23 - TSS region transcription start site region 60067
Lnclep 6 29030954 to 29039527 8573 + lncRNA gene long noncoding RNA upstream of leptin
Tssr55213 6 29060217 to 29060223 6 + TSS region transcription start site region 55213
Lep 6 29060220 to 29073877 13657 + protein coding gene leptin
Gm25589 6 29113441 to 29113606 165 - snRNA gene predicted gene, 25589
Cia6a 6 29117972 to 29118070 98 QTL collagen induced arthritis QTL 6a
D6Mit307 6 29117972 to 29118070 98 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 307
Rbm28 6 29123573 to 29164724 41151 - protein coding gene RNA binding motif protein 28
Gm24303 6 29150554 to 29150679 125 - miRNA gene predicted gene, 24303
Tssr60068 6 29160170 to 29160195 25 - TSS region transcription start site region 60068
Cpgi17222 6 29164327 to 29164814 487 CpG island CpG island 17222
Tssr60069 6 29164654 to 29164707 53 - TSS region transcription start site region 60069
Tssr60070 6 29164984 to 29164999 15 - TSS region transcription start site region 60070
Tssr60071 6 29165003 to 29165008 5 - TSS region transcription start site region 60071
Tssr60072 6 29165013 to 29165014 1 - TSS region transcription start site region 60072
Prrt4 6 29169232 to 29179584 10352 - protein coding gene proline-rich transmembrane protein 4
Cpgi17223 6 29169902 to 29171606 1704 CpG island CpG island 17223
Cpgi17224 6 29178667 to 29179828 1161 CpG island CpG island 17224
Impdh1 6 29200436 to 29216364 15928 - protein coding gene inosine monophosphate dehydrogenase 1
Tssr60073 6 29201157 to 29201169 12 - TSS region transcription start site region 60073
Cpgi17225 6 29211550 to 29212678 1128 CpG island CpG island 17225
Tssr60074 6 29212240 to 29212291 51 - TSS region transcription start site region 60074
Tssr60075 6 29212296 to 29212313 17 - TSS region transcription start site region 60075
Tssr55214 6 29212405 to 29212427 22 + TSS region transcription start site region 55214
Tssr60076 6 29212455 to 29212468 13 - TSS region transcription start site region 60076
D6Mit180 6 29212798 to 29212915 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 180
Cpgi17226 6 29215434 to 29216662 1228 CpG island CpG island 17226
Tssr60077 6 29216277 to 29216292 15 - TSS region transcription start site region 60077
Tssr60078 6 29216301 to 29216335 34 - TSS region transcription start site region 60078
Tssr60079 6 29216342 to 29216354 12 - TSS region transcription start site region 60079
Tssr55215 6 29216472 to 29216502 30 + TSS region transcription start site region 55215
Tssr60080 6 29232004 to 29232014 10 - TSS region transcription start site region 60080
Gm26021 6 29234434 to 29234564 130 + snoRNA gene predicted gene, 26021
Tssr60081 6 29245789 to 29245801 12 - TSS region transcription start site region 60081
Tssr55216 6 29246034 to 29246065 31 + TSS region transcription start site region 55216
Tssr55217 6 29246175 to 29246184 9 + TSS region transcription start site region 55217
Tssr55218 6 29248645 to 29248661 16 + TSS region transcription start site region 55218
Tssr60082 6 29250030 to 29250052 22 - TSS region transcription start site region 60082
Gm40358 6 29250291 to 29264959 14668 - lncRNA gene predicted gene, 40358
Tssr60083 6 29260843 to 29260862 19 - TSS region transcription start site region 60083
Tssr55219 6 29271295 to 29271311 16 + TSS region transcription start site region 55219
Tssr55220 6 29271330 to 29271380 50 + TSS region transcription start site region 55220
Cpgi17227 6 29272341 to 29272911 570 CpG island CpG island 17227
Tssr55221 6 29272409 to 29272431 22 + TSS region transcription start site region 55221
Tssr55222 6 29272436 to 29272462 26 + TSS region transcription start site region 55222
Tssr55223 6 29272464 to 29272502 38 + TSS region transcription start site region 55223
Hilpda 6 29272488 to 29275446 2958 + protein coding gene hypoxia inducible lipid droplet associated
Tssr60084 6 29272492 to 29272506 14 - TSS region transcription start site region 60084
Tssr60085 6 29272540 to 29272550 10 - TSS region transcription start site region 60085
Tssr60086 6 29272552 to 29272563 11 - TSS region transcription start site region 60086
Tssr55224 6 29272619 to 29272628 9 + TSS region transcription start site region 55224
Tssr55225 6 29272665 to 29272682 17 + TSS region transcription start site region 55225
Tssr55226 6 29272684 to 29272730 46 + TSS region transcription start site region 55226
Tssr55227 6 29279587 to 29279599 12 + TSS region transcription start site region 55227
Fam71f2 6 29279593 to 29290680 11087 + protein coding gene family with sequence similarity 71, member F2
Tssr60087 6 29280986 to 29280995 9 - TSS region transcription start site region 60087
Tssr60088 6 29281028 to 29281037 9 - TSS region transcription start site region 60088
Tssr55228 6 29281138 to 29281148 10 + TSS region transcription start site region 55228
Tssr55229 6 29281179 to 29281184 5 + TSS region transcription start site region 55229
D6Mit267 6 29302648 to 29302764 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 267
4930445G23Rik 6 29310771 to 29312222 1451 unclassified gene RIKEN cDNA 4930445G23 gene
Tssr55230 6 29313457 to 29313472 15 + TSS region transcription start site region 55230
Tssr55231 6 29313475 to 29313491 16 + TSS region transcription start site region 55231
Tssr55232 6 29313507 to 29313541 34 + TSS region transcription start site region 55232
Tssr55233 6 29319133 to 29319153 20 + TSS region transcription start site region 55233
Fam71f1 6 29319140 to 29336019 16879 + protein coding gene family with sequence similarity 71, member F1
Tssr55234 6 29319191 to 29319194 3 + TSS region transcription start site region 55234
Tssr55235 6 29319229 to 29319237 8 + TSS region transcription start site region 55235
Tssr55236 6 29319246 to 29319251 5 + TSS region transcription start site region 55236
Tssr55237 6 29319261 to 29319272 11 + TSS region transcription start site region 55237
Tssr55238 6 29319273 to 29319284 11 + TSS region transcription start site region 55238
Gm17172 6 29322804 to 29323206 402 - antisense lncRNA gene predicted gene 17172
Tssr55239 6 29323288 to 29323333 45 + TSS region transcription start site region 55239
Cpgi17228 6 29335664 to 29335829 165 CpG island CpG island 17228
Cpgi17229 6 29347529 to 29348526 997 CpG island CpG island 17229
Calu 6 29348106 to 29376675 28569 + protein coding gene calumenin
Tssr55240 6 29348114 to 29348123 9 + TSS region transcription start site region 55240
Tssr55241 6 29348136 to 29348142 6 + TSS region transcription start site region 55241
Tssr55242 6 29348143 to 29348159 16 + TSS region transcription start site region 55242
Tssr55243 6 29348163 to 29348165 2 + TSS region transcription start site region 55243
Tssr55244 6 29348175 to 29348184 9 + TSS region transcription start site region 55244
Tssr55245 6 29361410 to 29361425 15 + TSS region transcription start site region 55245
Tssr55246 6 29366117 to 29366134 17 + TSS region transcription start site region 55246
Tssr55247 6 29374477 to 29374480 3 + TSS region transcription start site region 55247
Opn1sw 6 29376671 to 29380513 3842 - protein coding gene opsin 1 (cone pigments), short-wave-sensitive (color blindness, tritan)
Tssr60089 6 29380426 to 29380435 9 - TSS region transcription start site region 60089
Tssr60090 6 29380468 to 29380485 17 - TSS region transcription start site region 60090
Tssr60091 6 29380517 to 29380520 3 - TSS region transcription start site region 60091