Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:2608399-4388439

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120 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm23551 6 3051289 to 3051409 120 - miRNA gene predicted gene, 23551
Vmn1r-ps5 6 3072180 to 3073073 893 - pseudogene vomeronasal 1 receptor, pseudogene 5
Vmn1r-ps6 6 3107503 to 3108486 983 - pseudogene vomeronasal 1 receptor, pseudogene 6
Vmn1r-ps7 6 3143644 to 3144564 920 - pseudogene vomeronasal 1 receptor, pseudogene 7
Cpgi17119 6 3182605 to 3183686 1081 CpG island CpG island 17119
Gm42642 6 3182630 to 3182984 354 - pseudogene predicted gene 42642
Tssr59672 6 3183002 to 3183021 19 - TSS region transcription start site region 59672
Gm42959 6 3190691 to 3190902 211 + unclassified gene predicted gene 42959
Gm19064 6 3196906 to 3197629 723 + pseudogene predicted gene, 19064
Tssr54691 6 3200760 to 3200769 9 + TSS region transcription start site region 54691
Tssr54692 6 3201107 to 3201148 41 + TSS region transcription start site region 54692
Tssr54693 6 3201266 to 3201304 38 + TSS region transcription start site region 54693
Tssr54694 6 3201426 to 3201427 1 + TSS region transcription start site region 54694
Tssr54695 6 3201462 to 3201521 59 + TSS region transcription start site region 54695
Gm2651 6 3207869 to 3208704 835 + pseudogene predicted gene 2651
Gm42960 6 3230792 to 3231032 240 + pseudogene predicted gene 42960
Gm42961 6 3277553 to 3277733 180 + pseudogene predicted gene 42961
Gm8579 6 3288519 to 3317019 28500 + pseudogene predicted gene 8579
Gm18222 6 3318530 to 3319916 1386 + pseudogene predicted gene, 18222
Tssr59673 6 3323381 to 3323394 13 - TSS region transcription start site region 59673
Gm43196 6 3325742 to 3327855 2113 - unclassified gene predicted gene 43196
Tssr59674 6 3332896 to 3332900 4 - TSS region transcription start site region 59674
Gm20559 6 3333194 to 3346128 12934 - unclassified non-coding RNA gene predicted gene, 20559
Gm43198 6 3334633 to 3334958 325 + unclassified gene predicted gene 43198
Gm43197 6 3336772 to 3339354 2582 - unclassified gene predicted gene 43197
Tssr59675 6 3340767 to 3340803 36 - TSS region transcription start site region 59675
Tssr54696 6 3344595 to 3344622 27 + TSS region transcription start site region 54696
Tssr59676 6 3345887 to 3345894 7 - TSS region transcription start site region 59676
Tssr59677 6 3345974 to 3345992 18 - TSS region transcription start site region 59677
Tssr59678 6 3345995 to 3346008 13 - TSS region transcription start site region 59678
Tssr59679 6 3346040 to 3346053 13 - TSS region transcription start site region 59679
Samd9l 6 3372257 to 3399571 27314 - protein coding gene sterile alpha motif domain containing 9-like
Tssr59680 6 3373571 to 3373593 22 - TSS region transcription start site region 59680
Tssr59681 6 3376883 to 3376907 24 - TSS region transcription start site region 59681
Tssr59682 6 3376932 to 3376943 11 - TSS region transcription start site region 59682
Tssr59683 6 3376990 to 3377002 12 - TSS region transcription start site region 59683
Tssr59684 6 3377013 to 3377106 93 - TSS region transcription start site region 59684
Tssr59685 6 3377107 to 3377142 35 - TSS region transcription start site region 59685
Tssr59686 6 3377174 to 3377198 24 - TSS region transcription start site region 59686
Tssr59687 6 3377273 to 3377282 9 - TSS region transcription start site region 59687
Tssr59688 6 3382000 to 3382014 14 - TSS region transcription start site region 59688
Tssr59689 6 3399301 to 3399315 14 - TSS region transcription start site region 59689
Tssr59690 6 3399451 to 3399464 13 - TSS region transcription start site region 59690
Tssr59691 6 3399545 to 3399574 29 - TSS region transcription start site region 59691
Hepacam2 6 3457096 to 3498298 41202 - protein coding gene HEPACAM family member 2
Tssr59692 6 3487371 to 3487419 48 - TSS region transcription start site region 59692
Tssr59693 6 3487479 to 3487484 5 - TSS region transcription start site region 59693
Tssr59694 6 3494486 to 3494526 40 - TSS region transcription start site region 59694
Tssr59695 6 3494527 to 3494542 15 - TSS region transcription start site region 59695
Tssr59696 6 3494549 to 3494563 14 - TSS region transcription start site region 59696
Tssr59697 6 3494587 to 3494598 11 - TSS region transcription start site region 59697
Tssr1765 6 3494605 to 3494612 7 - TSS region transcription start site region 1765
Cpgi17120 6 3498259 to 3498431 172 CpG island CpG island 17120
Tssr59698 6 3498301 to 3498312 11 - TSS region transcription start site region 59698
Vps50 6 3498393 to 3603531 105138 + protein coding gene VPS50 EARP/GARPII complex subunit
Tssr54697 6 3498399 to 3498439 40 + TSS region transcription start site region 54697
Tssr1766 6 3504241 to 3504245 4 + TSS region transcription start site region 1766
Tssr54698 6 3523934 to 3523942 8 + TSS region transcription start site region 54698
Tssr54699 6 3526668 to 3526679 11 + TSS region transcription start site region 54699
D6Mit231 6 3528851 to 3528953 102 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 231
Tssr1767 6 3570559 to 3570564 5 - TSS region transcription start site region 1767
Tssr59699 6 3570570 to 3570583 13 - TSS region transcription start site region 59699
Tssr54700 6 3574274 to 3574278 4 + TSS region transcription start site region 54700
Gm43294 6 3583814 to 3586303 2489 + unclassified gene predicted gene 43294
Calcr 6 3685720 to 3764732 79012 - protein coding gene calcitonin receptor
Mir653 6 3721301 to 3721385 84 - miRNA gene microRNA 653
Mir489 6 3721897 to 3722003 106 - miRNA gene microRNA 489
Cpgi17121 6 3763360 to 3764178 818 CpG island CpG island 17121
Tssr59700 6 3763618 to 3763624 6 - TSS region transcription start site region 59700
Gm33576 6 3763799 to 3807425 43626 + lncRNA gene predicted gene, 33576
Tssr54701 6 3763846 to 3763857 11 + TSS region transcription start site region 54701
Gm44221 6 3863049 to 3863436 387 - pseudogene predicted gene, 44221
Tfpi2 6 3962595 to 3988919 26324 - protein coding gene tissue factor pathway inhibitor 2
Tssr59701 6 3966406 to 3966409 3 - TSS region transcription start site region 59701
Cpgi17122 6 3968149 to 3968492 343 CpG island CpG island 17122
Tssr59702 6 3968364 to 3968381 17 - TSS region transcription start site region 59702
Tssr59703 6 3968395 to 3968417 22 - TSS region transcription start site region 59703
Tssr59704 6 3968571 to 3968610 39 - TSS region transcription start site region 59704
Tssr59705 6 3988834 to 3988881 47 - TSS region transcription start site region 59705
Tssr59706 6 3988900 to 3988941 41 - TSS region transcription start site region 59706
Tssr59707 6 3988946 to 3988964 18 - TSS region transcription start site region 59707
Tssr59708 6 3988967 to 3988987 20 - TSS region transcription start site region 59708
Tssr54702 6 3989053 to 3989077 24 + TSS region transcription start site region 54702
Tssr54703 6 3993776 to 3993789 13 + TSS region transcription start site region 54703
Gngt1 6 3993792 to 3997436 3644 + protein coding gene guanine nucleotide binding protein (G protein), gamma transducing activity polypeptide 1
Tssr54704 6 3993994 to 3994000 6 + TSS region transcription start site region 54704
Tssr54705 6 3994001 to 3994016 15 + TSS region transcription start site region 54705
Tssr54706 6 3994023 to 3994027 4 + TSS region transcription start site region 54706
Tssr1768 6 3994032 to 3994036 4 + TSS region transcription start site region 1768
Tssr54707 6 4003926 to 4003942 16 + TSS region transcription start site region 54707
Tssr54708 6 4003944 to 4004028 84 + TSS region transcription start site region 54708
Gng11 6 4003987 to 4008445 4458 + protein coding gene guanine nucleotide binding protein (G protein), gamma 11
Cpgi17123 6 4004038 to 4004320 282 CpG island CpG island 17123
Tssr54709 6 4004040 to 4004057 17 + TSS region transcription start site region 54709
Tssr54710 6 4004073 to 4004078 5 + TSS region transcription start site region 54710
Tssr54711 6 4004089 to 4004100 11 + TSS region transcription start site region 54711
Tssr54712 6 4004185 to 4004196 11 + TSS region transcription start site region 54712
Tssr54713 6 4004212 to 4004223 11 + TSS region transcription start site region 54713
Tssr54714 6 4004241 to 4004274 33 + TSS region transcription start site region 54714
Tssr54715 6 4004299 to 4004302 3 + TSS region transcription start site region 54715
Tssr59709 6 4030894 to 4030901 7 - TSS region transcription start site region 59709
4930528H21Rik 6 4031841 to 4047584 15743 - lincRNA gene RIKEN cDNA 4930528H21 gene
Tssr59710 6 4047557 to 4047569 12 - TSS region transcription start site region 59710
Tssr59711 6 4047573 to 4047580 7 - TSS region transcription start site region 59711
Tssr54716 6 4047677 to 4047711 34 + TSS region transcription start site region 54716
Tssr59712 6 4069758 to 4069770 12 - TSS region transcription start site region 59712
Gm38760 6 4074145 to 4076570 2425 - lncRNA gene predicted gene, 38760
Bet1 6 4076899 to 4086972 10073 - protein coding gene Bet1 golgi vesicular membrane trafficking protein
Tssr59713 6 4086803 to 4086819 16 - TSS region transcription start site region 59713
Tssr59714 6 4086820 to 4086831 11 - TSS region transcription start site region 59714
Cpgi17124 6 4086831 to 4087114 283 CpG island CpG island 17124
Tssr59715 6 4086885 to 4086904 19 - TSS region transcription start site region 59715
Tssr59716 6 4086914 to 4086960 46 - TSS region transcription start site region 59716
Gm44055 6 4254088 to 4254334 246 - pseudogene predicted gene, 44055
Gm44057 6 4262754 to 4262849 95 - pseudogene predicted gene, 44057
Gm8602 6 4359028 to 4359634 606 + pseudogene predicted gene 8602
Gm44379 6 4364232 to 4364395 163 - unclassified gene predicted gene, 44379
Gm44380 6 4367774 to 4368066 292 + unclassified gene predicted gene, 44380
Gm46948 6 4380180 to 4465277 85097 - lncRNA gene predicted gene, 46948
Gm24442 6 4382878 to 4383204 326 + unclassified non-coding RNA gene predicted gene, 24442