Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:23997810-25197821

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81 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc13a1 6 24088283 to 24168092 79809 - protein coding gene solute carrier family 13 (sodium/sulfate symporters), member 1
Tssr59979 6 24092359 to 24092361 2 - TSS region transcription start site region 59979
Tssr59980 6 24103984 to 24104021 37 - TSS region transcription start site region 59980
Tssr59981 6 24104140 to 24104156 16 - TSS region transcription start site region 59981
Tssr55165 6 24125667 to 24125669 2 + TSS region transcription start site region 55165
Gm20706 6 24138341 to 24140363 2022 - pseudogene predicted gene 20706
Gm26386 6 24143368 to 24143468 100 + miRNA gene predicted gene, 26386
Tssr59982 6 24168083 to 24168097 14 - TSS region transcription start site region 59982
Tssr59983 6 24212312 to 24212345 33 - TSS region transcription start site region 59983
Tssr59984 6 24275418 to 24275421 3 - TSS region transcription start site region 59984
Gm3136 6 24343252 to 24344590 1338 + pseudogene predicted gene 3136
Tssr59985 6 24373269 to 24373278 9 - TSS region transcription start site region 59985
D6Mit170 6 24381333 to 24381528 195 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 170
Cpgi17201 6 24383842 to 24384105 263 CpG island CpG island 17201
Iqub 6 24444865 to 24515067 70202 - protein coding gene IQ motif and ubiquitin domain containing
Tssr59986 6 24515036 to 24515083 47 - TSS region transcription start site region 59986
Ndufa5 6 24518662 to 24527687 9025 - protein coding gene NADH:ubiquinone oxidoreductase subunit A5
Cpgi17202 6 24526914 to 24527915 1001 CpG island CpG island 17202
Tssr59987 6 24527546 to 24527585 39 - TSS region transcription start site region 59987
Tssr59988 6 24528025 to 24528034 9 - TSS region transcription start site region 59988
Asb15 6 24528144 to 24573164 45020 + protein coding gene ankyrin repeat and SOCS box-containing 15
Tssr55166 6 24528186 to 24528200 14 + TSS region transcription start site region 55166
Tssr55167 6 24528211 to 24528218 7 + TSS region transcription start site region 55167
Tssr55168 6 24543316 to 24543325 9 + TSS region transcription start site region 55168
Tssr55169 6 24543351 to 24543366 15 + TSS region transcription start site region 55169
Tssr55170 6 24543367 to 24543409 42 + TSS region transcription start site region 55170
Tssr55171 6 24552856 to 24552859 3 + TSS region transcription start site region 55171
Gm42689 6 24594530 to 24595238 708 + pseudogene predicted gene 42689
Tssr1789 6 24597685 to 24597694 9 + TSS region transcription start site region 1789
Tssr1790 6 24597713 to 24597722 9 + TSS region transcription start site region 1790
Tssr55172 6 24597754 to 24597778 24 + TSS region transcription start site region 55172
Lmod2 6 24597771 to 24605414 7643 + protein coding gene leiomodin 2 (cardiac)
Tssr55173 6 24597810 to 24597821 11 + TSS region transcription start site region 55173
Tssr1791 6 24597904 to 24597915 11 + TSS region transcription start site region 1791
Tssr1792 6 24598022 to 24598036 14 + TSS region transcription start site region 1792
Tssr1793 6 24598084 to 24598091 7 + TSS region transcription start site region 1793
Tssr1794 6 24598101 to 24598105 4 + TSS region transcription start site region 1794
Tssr55174 6 24603323 to 24603341 18 + TSS region transcription start site region 55174
Tssr55175 6 24603369 to 24603381 12 + TSS region transcription start site region 55175
Tssr59989 6 24603404 to 24603469 65 - TSS region transcription start site region 59989
Cpgi17203 6 24603645 to 24604013 368 CpG island CpG island 17203
Wasl 6 24613810 to 24664995 51185 - protein coding gene Wiskott-Aldrich syndrome-like (human)
Tssr59990 6 24619594 to 24619609 15 - TSS region transcription start site region 59990
Tssr59991 6 24653670 to 24653674 4 - TSS region transcription start site region 59991
Gm42856 6 24657518 to 24660369 2851 - unclassified gene predicted gene 42856
Cpgi17204 6 24664214 to 24665532 1318 CpG island CpG island 17204
Tssr59992 6 24664872 to 24664896 24 - TSS region transcription start site region 59992
Tssr59993 6 24664897 to 24664917 20 - TSS region transcription start site region 59993
Tssr59994 6 24664921 to 24664957 36 - TSS region transcription start site region 59994
Tssr59995 6 24664960 to 24665038 78 - TSS region transcription start site region 59995
Tssr55176 6 24733241 to 24733248 7 + TSS region transcription start site region 55176
Hyal6 6 24733245 to 24745452 12207 + protein coding gene hyaluronoglucosaminidase 6
Tssr55177 6 24733251 to 24733295 44 + TSS region transcription start site region 55177
Tssr55178 6 24748325 to 24748356 31 + TSS region transcription start site region 55178
Hyal4 6 24748367 to 24766519 18152 + protein coding gene hyaluronoglucosaminidase 4
Gm38776 6 24766278 to 24775246 8968 - lncRNA gene predicted gene, 38776
Tssr55179 6 24791175 to 24791206 31 + TSS region transcription start site region 55179
Spam1 6 24791188 to 24801048 9860 + protein coding gene sperm adhesion molecule 1
Tssr55180 6 24791215 to 24791223 8 + TSS region transcription start site region 55180
Gm18327 6 24837294 to 24838123 829 + pseudogene predicted gene, 18327
Tssr55181 6 24857969 to 24858001 32 + TSS region transcription start site region 55181
Hyal5 6 24857997 to 24891958 33961 + protein coding gene hyaluronoglucosaminidase 5
Tssr55182 6 24858003 to 24858017 14 + TSS region transcription start site region 55182
Tssr55183 6 24863870 to 24863919 49 + TSS region transcription start site region 55183
Tssr55184 6 24863923 to 24863928 5 + TSS region transcription start site region 55184
Tssr55185 6 24890500 to 24890516 16 + TSS region transcription start site region 55185
Gm22267 6 24894670 to 24894800 130 - snoRNA gene predicted gene, 22267
Tmem229a 6 24951141 to 24956125 4984 - protein coding gene transmembrane protein 229A
Tssr59996 6 24953644 to 24953650 6 - TSS region transcription start site region 59996
Cpgi17205 6 24954812 to 24956482 1670 CpG island CpG island 17205
Tssr59997 6 24956071 to 24956105 34 - TSS region transcription start site region 59997
Tssr59998 6 24956106 to 24956131 25 - TSS region transcription start site region 59998
Tssr59999 6 24956348 to 24956371 23 - TSS region transcription start site region 59999
D6Mit171 6 24959860 to 24959963 103 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 171
D6Mit380 6 24970516 to 24970663 147 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-380
Bmiq7 6 25000000 to 80000000 55000000 QTL body mass index QTL 7
Gm38777 6 25033141 to 25057466 24325 + lncRNA gene predicted gene, 38777
Gm5302 6 25046503 to 25047298 795 - pseudogene predicted gene 5302
Gm24443 6 25078772 to 25078903 131 - snoRNA gene predicted gene, 24443
Gm30658 6 25126989 to 25183991 57002 - lncRNA gene predicted gene, 30658
D6Mit116 6 25150229 to 25150350 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 116