Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:22943898-24365136

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ptprz1 6 22875502 to 23052916 177414 + protein coding gene protein tyrosine phosphatase, receptor type Z, polypeptide 1
Gm30493 6 22979089 to 22986099 7010 - lncRNA gene predicted gene, 30493
Gm46954 6 22988197 to 22991626 3429 + lncRNA gene predicted gene, 46954
Tssr55158 6 22999681 to 22999690 9 + TSS region transcription start site region 55158
Aass 6 23072173 to 23132986 60813 - protein coding gene aminoadipate-semialdehyde synthase
Tssr59950 6 23079564 to 23079607 43 - TSS region transcription start site region 59950
Tssr59951 6 23085139 to 23085148 9 - TSS region transcription start site region 59951
Tssr59952 6 23085160 to 23085175 15 - TSS region transcription start site region 59952
Tssr59953 6 23085179 to 23085187 8 - TSS region transcription start site region 59953
Tssr59954 6 23096108 to 23096112 4 - TSS region transcription start site region 59954
Tssr59955 6 23098067 to 23098077 10 - TSS region transcription start site region 59955
Tssr59956 6 23098089 to 23098097 8 - TSS region transcription start site region 59956
Tssr59957 6 23098103 to 23098116 13 - TSS region transcription start site region 59957
Tssr59958 6 23122400 to 23122408 8 - TSS region transcription start site region 59958
D6Mit204 6 23131816 to 23131963 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 204
Cpgi17194 6 23132641 to 23132877 236 CpG island CpG island 17194
Tssr59959 6 23132906 to 23132913 7 - TSS region transcription start site region 59959
Tssr59960 6 23132920 to 23132956 36 - TSS region transcription start site region 59960
Tssr59961 6 23132981 to 23132992 11 - TSS region transcription start site region 59961
Gm8945 6 23155936 to 23156620 684 - pseudogene predicted gene 8945
Gm5989 6 23157989 to 23160061 2072 - pseudogene predicted pseudogene 5989
Gm8950 6 23163376 to 23164090 714 - pseudogene predicted gene 8950
Gm5301 6 23165341 to 23167413 2072 - pseudogene predicted pseudogene 5301
4930554P06Rik 6 23180481 to 23181527 1046 - lncRNA gene RIKEN cDNA 4930554P06 gene
Cpgi17195 6 23202869 to 23203029 160 CpG island CpG island 17195
Gm17933 6 23234833 to 23236479 1646 + pseudogene predicted gene, 17933
Fezf1 6 23245044 to 23248362 3318 - protein coding gene Fez family zinc finger 1
Cpgi17196 6 23245656 to 23245968 312 CpG island CpG island 17196
Cpgi17197 6 23247306 to 23250172 2866 CpG island CpG island 17197
Tssr59962 6 23248371 to 23248390 19 - TSS region transcription start site region 59962
Tssr55159 6 23248538 to 23248548 10 + TSS region transcription start site region 55159
Tssr55160 6 23248619 to 23248628 9 + TSS region transcription start site region 55160
Tssr55161 6 23248766 to 23248778 12 + TSS region transcription start site region 55161
Tssr55162 6 23248828 to 23248837 9 + TSS region transcription start site region 55162
C130093G08Rik 6 23251133 to 23253358 2225 + lncRNA gene RIKEN cDNA C130093G08 gene
Tssr55163 6 23251158 to 23251162 4 + TSS region transcription start site region 55163
Cpgi17198 6 23253626 to 23254397 771 CpG island CpG island 17198
Tssr59963 6 23254077 to 23254120 43 - TSS region transcription start site region 59963
Cpgi17199 6 23260066 to 23260548 482 CpG island CpG island 17199
Cadps2 6 23262773 to 23839421 576648 - protein coding gene Ca2+-dependent activator protein for secretion 2
Tssr59964 6 23272524 to 23272530 6 - TSS region transcription start site region 59964
Gm27959 6 23519746 to 23519856 110 + rRNA gene predicted gene, 27959
Gm38775 6 23573427 to 23583348 9921 + lncRNA gene predicted gene, 38775
Gm24217 6 23639824 to 23639956 132 - rRNA gene predicted gene, 24217
Rnf133 6 23648869 to 23650305 1436 - protein coding gene ring finger protein 133
Tssr59965 6 23650255 to 23650271 16 - TSS region transcription start site region 59965
Tssr59966 6 23650274 to 23650288 14 - TSS region transcription start site region 59966
Tssr59967 6 23650298 to 23650309 11 - TSS region transcription start site region 59967
Rnf148 6 23653898 to 23655136 1238 - protein coding gene ring finger protein 148
Tssr59968 6 23655129 to 23655140 11 - TSS region transcription start site region 59968
Tssr59969 6 23655142 to 23655168 26 - TSS region transcription start site region 59969
Tssr59970 6 23655180 to 23655190 10 - TSS region transcription start site region 59970
Gm18966 6 23736495 to 23738126 1631 + pseudogene predicted gene, 18966
Tssr59971 6 23804603 to 23804609 6 - TSS region transcription start site region 59971
Tssr59972 6 23824796 to 23824798 2 - TSS region transcription start site region 59972
Cpgi17200 6 23838491 to 23840076 1585 CpG island CpG island 17200
Tssr59973 6 23839243 to 23839267 24 - TSS region transcription start site region 59973
Tssr59974 6 23839286 to 23839315 29 - TSS region transcription start site region 59974
Tssr59975 6 23839322 to 23839333 11 - TSS region transcription start site region 59975
Tssr59976 6 23839471 to 23839487 16 - TSS region transcription start site region 59976
Tssr59977 6 23839491 to 23839514 23 - TSS region transcription start site region 59977
Tssr59978 6 23839525 to 23839547 22 - TSS region transcription start site region 59978
Tssr55164 6 23947773 to 23947774 1 + TSS region transcription start site region 55164
Tas2r118 6 23969161 to 23970060 899 - protein coding gene taste receptor, type 2, member 118
Slc13a1 6 24088283 to 24168092 79809 - protein coding gene solute carrier family 13 (sodium/sulfate symporters), member 1
Tssr59979 6 24092359 to 24092361 2 - TSS region transcription start site region 59979
Tssr59980 6 24103984 to 24104021 37 - TSS region transcription start site region 59980
Tssr59981 6 24104140 to 24104156 16 - TSS region transcription start site region 59981
Tssr55165 6 24125667 to 24125669 2 + TSS region transcription start site region 55165
Gm20706 6 24138341 to 24140363 2022 - pseudogene predicted gene 20706
Gm26386 6 24143368 to 24143468 100 + miRNA gene predicted gene, 26386
Tssr59982 6 24168083 to 24168097 14 - TSS region transcription start site region 59982
Tssr59983 6 24212312 to 24212345 33 - TSS region transcription start site region 59983
Tssr59984 6 24275418 to 24275421 3 - TSS region transcription start site region 59984
Gm3136 6 24343252 to 24344590 1338 + pseudogene predicted gene 3136