Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:21475933-30652293

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746 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kcnd2 6 21216109 to 21729805 513696 + protein coding gene potassium voltage-gated channel, Shal-related family, member 2
D6Mit306 6 21480933 to 21481056 123 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 306
tint 6 21480933 to 30647293 9166360 heritable phenotypic marker tail interaction with T complex
Gm42584 6 21491661 to 21491880 219 + pseudogene predicted gene 42584
Tssr55135 6 21516570 to 21516573 3 + TSS region transcription start site region 55135
5330437M03Rik 6 21681301 to 21685383 4082 + unclassified gene RIKEN cDNA 5330437M03 gene
Tspan12 6 21771395 to 21852515 81120 - protein coding gene tetraspanin 12
Tssr59927 6 21784047 to 21784051 4 - TSS region transcription start site region 59927
Cpgi17188 6 21851485 to 21852397 912 CpG island CpG island 17188
Tssr59928 6 21852126 to 21852183 57 - TSS region transcription start site region 59928
Gm30270 6 21852418 to 21853483 1065 + antisense lncRNA gene predicted gene, 30270
Tssr59929 6 21852434 to 21852443 9 - TSS region transcription start site region 59929
Tssr59930 6 21852509 to 21852520 11 - TSS region transcription start site region 59930
Tssr59931 6 21852523 to 21852540 17 - TSS region transcription start site region 59931
Gm3289 6 21852981 to 21858178 5197 - lincRNA gene predicted gene 3289
Tssr59932 6 21856338 to 21856339 1 - TSS region transcription start site region 59932
Tssr59933 6 21858134 to 21858139 5 - TSS region transcription start site region 59933
Tssr59934 6 21858164 to 21858183 19 - TSS region transcription start site region 59934
Tssr59935 6 21858712 to 21858729 17 - TSS region transcription start site region 59935
Tssr59936 6 21924900 to 21924943 43 - TSS region transcription start site region 59936
Cpgi17189 6 21949201 to 21950428 1227 CpG island CpG island 17189
Ing3 6 21949571 to 21976038 26467 + protein coding gene inhibitor of growth family, member 3
Tssr55136 6 21949634 to 21949683 49 + TSS region transcription start site region 55136
Tssr55137 6 21949988 to 21950062 74 + TSS region transcription start site region 55137
Tssr55138 6 21950378 to 21950401 23 + TSS region transcription start site region 55138
Cpgi17190 6 21985767 to 21986069 302 CpG island CpG island 17190
Tssr55139 6 21985903 to 21985972 69 + TSS region transcription start site region 55139
Gm26719 6 21985908 to 22067687 81779 - lincRNA gene predicted gene, 26719
Cped1 6 21985916 to 22256404 270488 + protein coding gene cadherin-like and PC-esterase domain containing 1
Tssr55140 6 21985978 to 21985992 14 + TSS region transcription start site region 55140
Tssr55141 6 21986131 to 21986150 19 + TSS region transcription start site region 55141
Tssr55142 6 21986155 to 21986175 20 + TSS region transcription start site region 55142
Tssr55143 6 21986181 to 21986210 29 + TSS region transcription start site region 55143
Tssr1788 6 21986253 to 21986264 11 + TSS region transcription start site region 1788
Tssr55144 6 21986351 to 21986362 11 + TSS region transcription start site region 55144
Tssr55145 6 21986378 to 21986435 57 + TSS region transcription start site region 55145
Tssr55146 6 21986438 to 21986457 19 + TSS region transcription start site region 55146
Tssr55147 6 21986887 to 21986917 30 + TSS region transcription start site region 55147
Tssr55148 6 21986970 to 21986996 26 + TSS region transcription start site region 55148
Tssr55149 6 22006421 to 22006422 1 + TSS region transcription start site region 55149
Tssr55150 6 22075893 to 22075896 3 + TSS region transcription start site region 55150
Gm8564 6 22182529 to 22185170 2641 + pseudogene predicted gene 8564
Gm42573 6 22245457 to 22245934 477 - pseudogene predicted gene 42573
Tssr55151 6 22288221 to 22288238 17 + TSS region transcription start site region 55151
Wnt16 6 22288227 to 22298522 10295 + protein coding gene wingless-type MMTV integration site family, member 16
Cpgi17191 6 22288508 to 22289572 1064 CpG island CpG island 17191
Fam3c 6 22306520 to 22356081 49561 - protein coding gene family with sequence similarity 3, member C
Tssr59937 6 22306868 to 22306872 4 - TSS region transcription start site region 59937
Tssr59938 6 22307041 to 22307052 11 - TSS region transcription start site region 59938
Tssr59939 6 22326462 to 22326465 3 - TSS region transcription start site region 59939
Tssr59940 6 22329607 to 22329625 18 - TSS region transcription start site region 59940
Tssr55152 6 22330831 to 22330835 4 + TSS region transcription start site region 55152
Tssr59941 6 22343455 to 22343461 6 - TSS region transcription start site region 59941
Tssr59942 6 22343710 to 22343720 10 - TSS region transcription start site region 59942
Cpgi17192 6 22355578 to 22356502 924 CpG island CpG island 17192
Tssr59943 6 22355990 to 22356007 17 - TSS region transcription start site region 59943
Tssr59944 6 22356012 to 22356053 41 - TSS region transcription start site region 59944
Tssr59945 6 22356068 to 22356175 107 - TSS region transcription start site region 59945
Tssr59946 6 22356176 to 22356190 14 - TSS region transcription start site region 59946
Gm38773 6 22389609 to 22392083 2474 - lncRNA gene predicted gene, 38773
Tssr59947 6 22391754 to 22391767 13 - TSS region transcription start site region 59947
Tssr59948 6 22392065 to 22392073 8 - TSS region transcription start site region 59948
Tssr55153 6 22440128 to 22440142 14 + TSS region transcription start site region 55153
Tssr59949 6 22444429 to 22444437 8 - TSS region transcription start site region 59949
Gm38774 6 22543154 to 22634138 90984 - lncRNA gene predicted gene, 38774
Gm43630 6 22622918 to 22623693 775 + pseudogene predicted gene 43630
Gm8927 6 22703436 to 22704416 980 + pseudogene predicted gene 8927
D6Mit85 6 22718766 to 22718877 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 85
Gm8930 6 22733733 to 22734500 767 + pseudogene predicted gene 8930
Gm18861 6 22759399 to 22760584 1185 + pseudogene predicted gene, 18861
Gm23961 6 22768106 to 22768202 96 - miRNA gene predicted gene, 23961
Gm25942 6 22789818 to 22789927 109 + miRNA gene predicted gene, 25942
Gm43629 6 22804626 to 22805329 703 - pseudogene predicted gene 43629
Cpgi17193 6 22875234 to 22876343 1109 CpG island CpG island 17193
Tssr55154 6 22875496 to 22875512 16 + TSS region transcription start site region 55154
Ptprz1 6 22875502 to 23052916 177414 + protein coding gene protein tyrosine phosphatase, receptor type Z, polypeptide 1
Tssr55155 6 22875522 to 22875537 15 + TSS region transcription start site region 55155
Tssr55156 6 22926417 to 22926420 3 + TSS region transcription start site region 55156
Tssr55157 6 22936477 to 22936479 2 + TSS region transcription start site region 55157
Gm30493 6 22979089 to 22986099 7010 - lncRNA gene predicted gene, 30493
Gm46954 6 22988197 to 22991626 3429 + lncRNA gene predicted gene, 46954
Tssr55158 6 22999681 to 22999690 9 + TSS region transcription start site region 55158
Aass 6 23072173 to 23132986 60813 - protein coding gene aminoadipate-semialdehyde synthase
Tssr59950 6 23079564 to 23079607 43 - TSS region transcription start site region 59950
Tssr59951 6 23085139 to 23085148 9 - TSS region transcription start site region 59951
Tssr59952 6 23085160 to 23085175 15 - TSS region transcription start site region 59952
Tssr59953 6 23085179 to 23085187 8 - TSS region transcription start site region 59953
Tssr59954 6 23096108 to 23096112 4 - TSS region transcription start site region 59954
Tssr59955 6 23098067 to 23098077 10 - TSS region transcription start site region 59955
Tssr59956 6 23098089 to 23098097 8 - TSS region transcription start site region 59956
Tssr59957 6 23098103 to 23098116 13 - TSS region transcription start site region 59957
Tssr59958 6 23122400 to 23122408 8 - TSS region transcription start site region 59958
D6Mit204 6 23131816 to 23131963 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 204
Cpgi17194 6 23132641 to 23132877 236 CpG island CpG island 17194
Tssr59959 6 23132906 to 23132913 7 - TSS region transcription start site region 59959
Tssr59960 6 23132920 to 23132956 36 - TSS region transcription start site region 59960
Tssr59961 6 23132981 to 23132992 11 - TSS region transcription start site region 59961
Gm8945 6 23155936 to 23156620 684 - pseudogene predicted gene 8945
Gm5989 6 23157989 to 23160061 2072 - pseudogene predicted pseudogene 5989
Gm8950 6 23163376 to 23164090 714 - pseudogene predicted gene 8950
Gm5301 6 23165341 to 23167413 2072 - pseudogene predicted pseudogene 5301
4930554P06Rik 6 23180481 to 23181527 1046 - lncRNA gene RIKEN cDNA 4930554P06 gene
Cpgi17195 6 23202869 to 23203029 160 CpG island CpG island 17195
Gm17933 6 23234833 to 23236479 1646 + pseudogene predicted gene, 17933
Fezf1 6 23245044 to 23248362 3318 - protein coding gene Fez family zinc finger 1
Cpgi17196 6 23245656 to 23245968 312 CpG island CpG island 17196
Cpgi17197 6 23247306 to 23250172 2866 CpG island CpG island 17197
Tssr59962 6 23248371 to 23248390 19 - TSS region transcription start site region 59962
Tssr55159 6 23248538 to 23248548 10 + TSS region transcription start site region 55159
Tssr55160 6 23248619 to 23248628 9 + TSS region transcription start site region 55160
Tssr55161 6 23248766 to 23248778 12 + TSS region transcription start site region 55161
Tssr55162 6 23248828 to 23248837 9 + TSS region transcription start site region 55162
C130093G08Rik 6 23251133 to 23253358 2225 + lncRNA gene RIKEN cDNA C130093G08 gene
Tssr55163 6 23251158 to 23251162 4 + TSS region transcription start site region 55163
Cpgi17198 6 23253626 to 23254397 771 CpG island CpG island 17198
Tssr59963 6 23254077 to 23254120 43 - TSS region transcription start site region 59963
Cpgi17199 6 23260066 to 23260548 482 CpG island CpG island 17199
Cadps2 6 23262773 to 23839421 576648 - protein coding gene Ca2+-dependent activator protein for secretion 2
Tssr59964 6 23272524 to 23272530 6 - TSS region transcription start site region 59964
Gm27959 6 23519746 to 23519856 110 + rRNA gene predicted gene, 27959
Gm38775 6 23573427 to 23583348 9921 + lncRNA gene predicted gene, 38775
Gm24217 6 23639824 to 23639956 132 - rRNA gene predicted gene, 24217
Rnf133 6 23648869 to 23650305 1436 - protein coding gene ring finger protein 133
Tssr59965 6 23650255 to 23650271 16 - TSS region transcription start site region 59965
Tssr59966 6 23650274 to 23650288 14 - TSS region transcription start site region 59966
Tssr59967 6 23650298 to 23650309 11 - TSS region transcription start site region 59967
Rnf148 6 23653898 to 23655136 1238 - protein coding gene ring finger protein 148
Tssr59968 6 23655129 to 23655140 11 - TSS region transcription start site region 59968
Tssr59969 6 23655142 to 23655168 26 - TSS region transcription start site region 59969
Tssr59970 6 23655180 to 23655190 10 - TSS region transcription start site region 59970
Gm18966 6 23736495 to 23738126 1631 + pseudogene predicted gene, 18966
Tssr59971 6 23804603 to 23804609 6 - TSS region transcription start site region 59971
Tssr59972 6 23824796 to 23824798 2 - TSS region transcription start site region 59972
Cpgi17200 6 23838491 to 23840076 1585 CpG island CpG island 17200
Tssr59973 6 23839243 to 23839267 24 - TSS region transcription start site region 59973
Tssr59974 6 23839286 to 23839315 29 - TSS region transcription start site region 59974
Tssr59975 6 23839322 to 23839333 11 - TSS region transcription start site region 59975
Tssr59976 6 23839471 to 23839487 16 - TSS region transcription start site region 59976
Tssr59977 6 23839491 to 23839514 23 - TSS region transcription start site region 59977
Tssr59978 6 23839525 to 23839547 22 - TSS region transcription start site region 59978
Tssr55164 6 23947773 to 23947774 1 + TSS region transcription start site region 55164
Tas2r118 6 23969161 to 23970060 899 - protein coding gene taste receptor, type 2, member 118
Slc13a1 6 24088283 to 24168092 79809 - protein coding gene solute carrier family 13 (sodium/sulfate symporters), member 1
Tssr59979 6 24092359 to 24092361 2 - TSS region transcription start site region 59979
Tssr59980 6 24103984 to 24104021 37 - TSS region transcription start site region 59980
Tssr59981 6 24104140 to 24104156 16 - TSS region transcription start site region 59981
Tssr55165 6 24125667 to 24125669 2 + TSS region transcription start site region 55165
Gm20706 6 24138341 to 24140363 2022 - pseudogene predicted gene 20706
Gm26386 6 24143368 to 24143468 100 + miRNA gene predicted gene, 26386
Tssr59982 6 24168083 to 24168097 14 - TSS region transcription start site region 59982
Tssr59983 6 24212312 to 24212345 33 - TSS region transcription start site region 59983
Tssr59984 6 24275418 to 24275421 3 - TSS region transcription start site region 59984
Gm3136 6 24343252 to 24344590 1338 + pseudogene predicted gene 3136
Tssr59985 6 24373269 to 24373278 9 - TSS region transcription start site region 59985
D6Mit170 6 24381333 to 24381528 195 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 170
Cpgi17201 6 24383842 to 24384105 263 CpG island CpG island 17201
Iqub 6 24444865 to 24515067 70202 - protein coding gene IQ motif and ubiquitin domain containing
Tssr59986 6 24515036 to 24515083 47 - TSS region transcription start site region 59986
Ndufa5 6 24518662 to 24527687 9025 - protein coding gene NADH:ubiquinone oxidoreductase subunit A5
Cpgi17202 6 24526914 to 24527915 1001 CpG island CpG island 17202
Tssr59987 6 24527546 to 24527585 39 - TSS region transcription start site region 59987
Tssr59988 6 24528025 to 24528034 9 - TSS region transcription start site region 59988
Asb15 6 24528144 to 24573164 45020 + protein coding gene ankyrin repeat and SOCS box-containing 15
Tssr55166 6 24528186 to 24528200 14 + TSS region transcription start site region 55166
Tssr55167 6 24528211 to 24528218 7 + TSS region transcription start site region 55167
Tssr55168 6 24543316 to 24543325 9 + TSS region transcription start site region 55168
Tssr55169 6 24543351 to 24543366 15 + TSS region transcription start site region 55169
Tssr55170 6 24543367 to 24543409 42 + TSS region transcription start site region 55170
Tssr55171 6 24552856 to 24552859 3 + TSS region transcription start site region 55171
Gm42689 6 24594530 to 24595238 708 + pseudogene predicted gene 42689
Tssr1789 6 24597685 to 24597694 9 + TSS region transcription start site region 1789
Tssr1790 6 24597713 to 24597722 9 + TSS region transcription start site region 1790
Tssr55172 6 24597754 to 24597778 24 + TSS region transcription start site region 55172
Lmod2 6 24597771 to 24605414 7643 + protein coding gene leiomodin 2 (cardiac)
Tssr55173 6 24597810 to 24597821 11 + TSS region transcription start site region 55173
Tssr1791 6 24597904 to 24597915 11 + TSS region transcription start site region 1791
Tssr1792 6 24598022 to 24598036 14 + TSS region transcription start site region 1792
Tssr1793 6 24598084 to 24598091 7 + TSS region transcription start site region 1793
Tssr1794 6 24598101 to 24598105 4 + TSS region transcription start site region 1794
Tssr55174 6 24603323 to 24603341 18 + TSS region transcription start site region 55174
Tssr55175 6 24603369 to 24603381 12 + TSS region transcription start site region 55175
Tssr59989 6 24603404 to 24603469 65 - TSS region transcription start site region 59989
Cpgi17203 6 24603645 to 24604013 368 CpG island CpG island 17203
Wasl 6 24613810 to 24664995 51185 - protein coding gene Wiskott-Aldrich syndrome-like (human)
Tssr59990 6 24619594 to 24619609 15 - TSS region transcription start site region 59990
Tssr59991 6 24653670 to 24653674 4 - TSS region transcription start site region 59991
Gm42856 6 24657518 to 24660369 2851 - unclassified gene predicted gene 42856
Cpgi17204 6 24664214 to 24665532 1318 CpG island CpG island 17204
Tssr59992 6 24664872 to 24664896 24 - TSS region transcription start site region 59992
Tssr59993 6 24664897 to 24664917 20 - TSS region transcription start site region 59993
Tssr59994 6 24664921 to 24664957 36 - TSS region transcription start site region 59994
Tssr59995 6 24664960 to 24665038 78 - TSS region transcription start site region 59995
Tssr55176 6 24733241 to 24733248 7 + TSS region transcription start site region 55176
Hyal6 6 24733245 to 24745452 12207 + protein coding gene hyaluronoglucosaminidase 6
Tssr55177 6 24733251 to 24733295 44 + TSS region transcription start site region 55177
Tssr55178 6 24748325 to 24748356 31 + TSS region transcription start site region 55178
Hyal4 6 24748367 to 24766519 18152 + protein coding gene hyaluronoglucosaminidase 4
Gm38776 6 24766278 to 24775246 8968 - lncRNA gene predicted gene, 38776
Tssr55179 6 24791175 to 24791206 31 + TSS region transcription start site region 55179
Spam1 6 24791188 to 24801048 9860 + protein coding gene sperm adhesion molecule 1