Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:20394470-22035893

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71 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm29798 6 20490539 to 20495809 5270 + pseudogene predicted gene, 29798
Gm38772 6 20950147 to 20970378 20231 - lncRNA gene predicted gene, 38772
Tssr59925 6 20970335 to 20970352 17 - TSS region transcription start site region 59925
Gm19102 6 20970438 to 20970990 552 - pseudogene predicted gene, 19102
Gm23960 6 21013112 to 21013242 130 - snoRNA gene predicted gene, 23960
Tssr59926 6 21013159 to 21013195 36 - TSS region transcription start site region 59926
Gm26373 6 21128156 to 21128258 102 + snRNA gene predicted gene, 26373
Cpgi17187 6 21214470 to 21215893 1423 CpG island CpG island 17187
Tssr55119 6 21214573 to 21214600 27 + TSS region transcription start site region 55119
Tssr55120 6 21214821 to 21214859 38 + TSS region transcription start site region 55120
Tssr55121 6 21214866 to 21214907 41 + TSS region transcription start site region 55121
Tssr55122 6 21215331 to 21215353 22 + TSS region transcription start site region 55122
Tssr55123 6 21215358 to 21215387 29 + TSS region transcription start site region 55123
Tssr55124 6 21215414 to 21215435 21 + TSS region transcription start site region 55124
Tssr55125 6 21215472 to 21215484 12 + TSS region transcription start site region 55125
Tssr55126 6 21215552 to 21215563 11 + TSS region transcription start site region 55126
Kcnd2 6 21216109 to 21729805 513696 + protein coding gene potassium voltage-gated channel, Shal-related family, member 2
Tssr55127 6 21233444 to 21233447 3 + TSS region transcription start site region 55127
6430519N07Rik 6 21233597 to 21236172 2575 unclassified non-coding RNA gene RIKEN cDNA 6430519N07 gene
D6Mit266 6 21249207 to 21249326 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 266
Smdq3 6 21249207 to 21249326 119 QTL segregation of mitochondrial DNA QTL 3
Gm42583 6 21258921 to 21265620 6699 + unclassified gene predicted gene 42583
6330436F06Rik 6 21274964 to 21276564 1600 unclassified non-coding RNA gene RIKEN cDNA 6330436F06 gene
6330510M09Rik 6 21282099 to 21283561 1462 unclassified gene RIKEN cDNA 6330510M09 gene
Tssr55128 6 21283421 to 21283425 4 + TSS region transcription start site region 55128
Tssr55129 6 21307870 to 21307877 7 + TSS region transcription start site region 55129
Tssr55130 6 21312145 to 21312165 20 + TSS region transcription start site region 55130
Tssr55131 6 21312206 to 21312219 13 + TSS region transcription start site region 55131
Tssr55132 6 21344535 to 21344539 4 + TSS region transcription start site region 55132
6720467L15Rik 6 21352116 to 21354596 2480 unclassified non-coding RNA gene RIKEN cDNA 6720467L15 gene
Tssr55133 6 21384655 to 21384660 5 + TSS region transcription start site region 55133
Tssr55134 6 21468593 to 21468604 11 + TSS region transcription start site region 55134
tint 6 21480933 to 30647293 9166360 heritable phenotypic marker tail interaction with T complex
D6Mit306 6 21480933 to 21481056 123 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 306
Gm42584 6 21491661 to 21491880 219 + pseudogene predicted gene 42584
Tssr55135 6 21516570 to 21516573 3 + TSS region transcription start site region 55135
5330437M03Rik 6 21681301 to 21685383 4082 + unclassified gene RIKEN cDNA 5330437M03 gene
Tspan12 6 21771395 to 21852515 81120 - protein coding gene tetraspanin 12
Tssr59927 6 21784047 to 21784051 4 - TSS region transcription start site region 59927
Cpgi17188 6 21851485 to 21852397 912 CpG island CpG island 17188
Tssr59928 6 21852126 to 21852183 57 - TSS region transcription start site region 59928
Gm30270 6 21852418 to 21853483 1065 + antisense lncRNA gene predicted gene, 30270
Tssr59929 6 21852434 to 21852443 9 - TSS region transcription start site region 59929
Tssr59930 6 21852509 to 21852520 11 - TSS region transcription start site region 59930
Tssr59931 6 21852523 to 21852540 17 - TSS region transcription start site region 59931
Gm3289 6 21852981 to 21858178 5197 - lincRNA gene predicted gene 3289
Tssr59932 6 21856338 to 21856339 1 - TSS region transcription start site region 59932
Tssr59933 6 21858134 to 21858139 5 - TSS region transcription start site region 59933
Tssr59934 6 21858164 to 21858183 19 - TSS region transcription start site region 59934
Tssr59935 6 21858712 to 21858729 17 - TSS region transcription start site region 59935
Tssr59936 6 21924900 to 21924943 43 - TSS region transcription start site region 59936
Cpgi17189 6 21949201 to 21950428 1227 CpG island CpG island 17189
Ing3 6 21949571 to 21976038 26467 + protein coding gene inhibitor of growth family, member 3
Tssr55136 6 21949634 to 21949683 49 + TSS region transcription start site region 55136
Tssr55137 6 21949988 to 21950062 74 + TSS region transcription start site region 55137
Tssr55138 6 21950378 to 21950401 23 + TSS region transcription start site region 55138
Cpgi17190 6 21985767 to 21986069 302 CpG island CpG island 17190
Tssr55139 6 21985903 to 21985972 69 + TSS region transcription start site region 55139
Gm26719 6 21985908 to 22067687 81779 - lincRNA gene predicted gene, 26719
Cped1 6 21985916 to 22256404 270488 + protein coding gene cadherin-like and PC-esterase domain containing 1
Tssr55140 6 21985978 to 21985992 14 + TSS region transcription start site region 55140
Tssr55141 6 21986131 to 21986150 19 + TSS region transcription start site region 55141
Tssr55142 6 21986155 to 21986175 20 + TSS region transcription start site region 55142
Tssr55143 6 21986181 to 21986210 29 + TSS region transcription start site region 55143
Tssr1788 6 21986253 to 21986264 11 + TSS region transcription start site region 1788
Tssr55144 6 21986351 to 21986362 11 + TSS region transcription start site region 55144
Tssr55145 6 21986378 to 21986435 57 + TSS region transcription start site region 55145
Tssr55146 6 21986438 to 21986457 19 + TSS region transcription start site region 55146
Tssr55147 6 21986887 to 21986917 30 + TSS region transcription start site region 55147
Tssr55148 6 21986970 to 21986996 26 + TSS region transcription start site region 55148
Tssr55149 6 22006421 to 22006422 1 + TSS region transcription start site region 55149