Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:19304470-23125893

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134 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Eif3s6-ps4 6 19318021 to 19319400 1379 - pseudogene eukaryotic translation initiation factor 3, subunit 6, pseudogene 4
Gm24213 6 19341329 to 19341586 257 - unclassified non-coding RNA gene predicted gene, 24213
Mir6370 6 19555342 to 19555461 119 + miRNA gene microRNA 6370
Gm22828 6 19624609 to 19624715 106 + snRNA gene predicted gene, 22828
D6Mit346 6 19691866 to 19691982 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 346
Gm18482 6 19773975 to 19777551 3576 - pseudogene predicted gene, 18482
Gm43501 6 19784686 to 19784792 106 + pseudogene predicted gene 43501
Gm42581 6 19788053 to 19789018 965 + pseudogene predicted gene 42581
D6Mit167 6 19814700 to 19814829 129 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 167
Sxbq2 6 19912686 to 71322775 51410089 QTL SGC/Knj cross B6 QTL 2
D6Mit88 6 19912686 to 19912833 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 88
Gm29798 6 20490539 to 20495809 5270 + pseudogene predicted gene, 29798
Gm38772 6 20950147 to 20970378 20231 - lncRNA gene predicted gene, 38772
Tssr59925 6 20970335 to 20970352 17 - TSS region transcription start site region 59925
Gm19102 6 20970438 to 20970990 552 - pseudogene predicted gene, 19102
Gm23960 6 21013112 to 21013242 130 - snoRNA gene predicted gene, 23960
Tssr59926 6 21013159 to 21013195 36 - TSS region transcription start site region 59926
Gm26373 6 21128156 to 21128258 102 + snRNA gene predicted gene, 26373
Cpgi17187 6 21214470 to 21215893 1423 CpG island CpG island 17187
Tssr55119 6 21214573 to 21214600 27 + TSS region transcription start site region 55119
Tssr55120 6 21214821 to 21214859 38 + TSS region transcription start site region 55120
Tssr55121 6 21214866 to 21214907 41 + TSS region transcription start site region 55121
Tssr55122 6 21215331 to 21215353 22 + TSS region transcription start site region 55122
Tssr55123 6 21215358 to 21215387 29 + TSS region transcription start site region 55123
Tssr55124 6 21215414 to 21215435 21 + TSS region transcription start site region 55124
Tssr55125 6 21215472 to 21215484 12 + TSS region transcription start site region 55125
Tssr55126 6 21215552 to 21215563 11 + TSS region transcription start site region 55126
Kcnd2 6 21216109 to 21729805 513696 + protein coding gene potassium voltage-gated channel, Shal-related family, member 2
Tssr55127 6 21233444 to 21233447 3 + TSS region transcription start site region 55127
6430519N07Rik 6 21233597 to 21236172 2575 unclassified non-coding RNA gene RIKEN cDNA 6430519N07 gene
D6Mit266 6 21249207 to 21249326 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 266
Smdq3 6 21249207 to 21249326 119 QTL segregation of mitochondrial DNA QTL 3
Gm42583 6 21258921 to 21265620 6699 + unclassified gene predicted gene 42583
6330436F06Rik 6 21274964 to 21276564 1600 unclassified non-coding RNA gene RIKEN cDNA 6330436F06 gene
6330510M09Rik 6 21282099 to 21283561 1462 unclassified gene RIKEN cDNA 6330510M09 gene
Tssr55128 6 21283421 to 21283425 4 + TSS region transcription start site region 55128
Tssr55129 6 21307870 to 21307877 7 + TSS region transcription start site region 55129
Tssr55130 6 21312145 to 21312165 20 + TSS region transcription start site region 55130
Tssr55131 6 21312206 to 21312219 13 + TSS region transcription start site region 55131
Tssr55132 6 21344535 to 21344539 4 + TSS region transcription start site region 55132
6720467L15Rik 6 21352116 to 21354596 2480 unclassified non-coding RNA gene RIKEN cDNA 6720467L15 gene
Tssr55133 6 21384655 to 21384660 5 + TSS region transcription start site region 55133
Tssr55134 6 21468593 to 21468604 11 + TSS region transcription start site region 55134
D6Mit306 6 21480933 to 21481056 123 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 306
tint 6 21480933 to 30647293 9166360 heritable phenotypic marker tail interaction with T complex
Gm42584 6 21491661 to 21491880 219 + pseudogene predicted gene 42584
Tssr55135 6 21516570 to 21516573 3 + TSS region transcription start site region 55135
5330437M03Rik 6 21681301 to 21685383 4082 + unclassified gene RIKEN cDNA 5330437M03 gene
Tspan12 6 21771395 to 21852515 81120 - protein coding gene tetraspanin 12
Tssr59927 6 21784047 to 21784051 4 - TSS region transcription start site region 59927
Cpgi17188 6 21851485 to 21852397 912 CpG island CpG island 17188
Tssr59928 6 21852126 to 21852183 57 - TSS region transcription start site region 59928
Gm30270 6 21852418 to 21853483 1065 + antisense lncRNA gene predicted gene, 30270
Tssr59929 6 21852434 to 21852443 9 - TSS region transcription start site region 59929
Tssr59930 6 21852509 to 21852520 11 - TSS region transcription start site region 59930
Tssr59931 6 21852523 to 21852540 17 - TSS region transcription start site region 59931
Gm3289 6 21852981 to 21858178 5197 - lincRNA gene predicted gene 3289
Tssr59932 6 21856338 to 21856339 1 - TSS region transcription start site region 59932
Tssr59933 6 21858134 to 21858139 5 - TSS region transcription start site region 59933
Tssr59934 6 21858164 to 21858183 19 - TSS region transcription start site region 59934
Tssr59935 6 21858712 to 21858729 17 - TSS region transcription start site region 59935
Tssr59936 6 21924900 to 21924943 43 - TSS region transcription start site region 59936
Cpgi17189 6 21949201 to 21950428 1227 CpG island CpG island 17189
Ing3 6 21949571 to 21976038 26467 + protein coding gene inhibitor of growth family, member 3
Tssr55136 6 21949634 to 21949683 49 + TSS region transcription start site region 55136
Tssr55137 6 21949988 to 21950062 74 + TSS region transcription start site region 55137
Tssr55138 6 21950378 to 21950401 23 + TSS region transcription start site region 55138
Cpgi17190 6 21985767 to 21986069 302 CpG island CpG island 17190
Tssr55139 6 21985903 to 21985972 69 + TSS region transcription start site region 55139
Gm26719 6 21985908 to 22067687 81779 - lincRNA gene predicted gene, 26719
Cped1 6 21985916 to 22256404 270488 + protein coding gene cadherin-like and PC-esterase domain containing 1
Tssr55140 6 21985978 to 21985992 14 + TSS region transcription start site region 55140
Tssr55141 6 21986131 to 21986150 19 + TSS region transcription start site region 55141
Tssr55142 6 21986155 to 21986175 20 + TSS region transcription start site region 55142
Tssr55143 6 21986181 to 21986210 29 + TSS region transcription start site region 55143
Tssr1788 6 21986253 to 21986264 11 + TSS region transcription start site region 1788
Tssr55144 6 21986351 to 21986362 11 + TSS region transcription start site region 55144
Tssr55145 6 21986378 to 21986435 57 + TSS region transcription start site region 55145
Tssr55146 6 21986438 to 21986457 19 + TSS region transcription start site region 55146
Tssr55147 6 21986887 to 21986917 30 + TSS region transcription start site region 55147
Tssr55148 6 21986970 to 21986996 26 + TSS region transcription start site region 55148
Tssr55149 6 22006421 to 22006422 1 + TSS region transcription start site region 55149
Tssr55150 6 22075893 to 22075896 3 + TSS region transcription start site region 55150
Gm8564 6 22182529 to 22185170 2641 + pseudogene predicted gene 8564
Gm42573 6 22245457 to 22245934 477 - pseudogene predicted gene 42573
Tssr55151 6 22288221 to 22288238 17 + TSS region transcription start site region 55151
Wnt16 6 22288227 to 22298522 10295 + protein coding gene wingless-type MMTV integration site family, member 16
Cpgi17191 6 22288508 to 22289572 1064 CpG island CpG island 17191
Fam3c 6 22306520 to 22356081 49561 - protein coding gene family with sequence similarity 3, member C
Tssr59937 6 22306868 to 22306872 4 - TSS region transcription start site region 59937
Tssr59938 6 22307041 to 22307052 11 - TSS region transcription start site region 59938
Tssr59939 6 22326462 to 22326465 3 - TSS region transcription start site region 59939
Tssr59940 6 22329607 to 22329625 18 - TSS region transcription start site region 59940
Tssr55152 6 22330831 to 22330835 4 + TSS region transcription start site region 55152
Tssr59941 6 22343455 to 22343461 6 - TSS region transcription start site region 59941
Tssr59942 6 22343710 to 22343720 10 - TSS region transcription start site region 59942
Cpgi17192 6 22355578 to 22356502 924 CpG island CpG island 17192
Tssr59943 6 22355990 to 22356007 17 - TSS region transcription start site region 59943
Tssr59944 6 22356012 to 22356053 41 - TSS region transcription start site region 59944
Tssr59945 6 22356068 to 22356175 107 - TSS region transcription start site region 59945
Tssr59946 6 22356176 to 22356190 14 - TSS region transcription start site region 59946
Gm38773 6 22389609 to 22392083 2474 - lncRNA gene predicted gene, 38773
Tssr59947 6 22391754 to 22391767 13 - TSS region transcription start site region 59947
Tssr59948 6 22392065 to 22392073 8 - TSS region transcription start site region 59948
Tssr55153 6 22440128 to 22440142 14 + TSS region transcription start site region 55153
Tssr59949 6 22444429 to 22444437 8 - TSS region transcription start site region 59949
Gm38774 6 22543154 to 22634138 90984 - lncRNA gene predicted gene, 38774
Gm43630 6 22622918 to 22623693 775 + pseudogene predicted gene 43630
Gm8927 6 22703436 to 22704416 980 + pseudogene predicted gene 8927
D6Mit85 6 22718766 to 22718877 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 85
Gm8930 6 22733733 to 22734500 767 + pseudogene predicted gene 8930
Gm18861 6 22759399 to 22760584 1185 + pseudogene predicted gene, 18861
Gm23961 6 22768106 to 22768202 96 - miRNA gene predicted gene, 23961
Gm25942 6 22789818 to 22789927 109 + miRNA gene predicted gene, 25942
Gm43629 6 22804626 to 22805329 703 - pseudogene predicted gene 43629
Cpgi17193 6 22875234 to 22876343 1109 CpG island CpG island 17193
Tssr55154 6 22875496 to 22875512 16 + TSS region transcription start site region 55154
Ptprz1 6 22875502 to 23052916 177414 + protein coding gene protein tyrosine phosphatase, receptor type Z, polypeptide 1
Tssr55155 6 22875522 to 22875537 15 + TSS region transcription start site region 55155
Tssr55156 6 22926417 to 22926420 3 + TSS region transcription start site region 55156
Tssr55157 6 22936477 to 22936479 2 + TSS region transcription start site region 55157
Gm30493 6 22979089 to 22986099 7010 - lncRNA gene predicted gene, 30493
Gm46954 6 22988197 to 22991626 3429 + lncRNA gene predicted gene, 46954
Tssr55158 6 22999681 to 22999690 9 + TSS region transcription start site region 55158
Aass 6 23072173 to 23132986 60813 - protein coding gene aminoadipate-semialdehyde synthase
Tssr59950 6 23079564 to 23079607 43 - TSS region transcription start site region 59950
Tssr59951 6 23085139 to 23085148 9 - TSS region transcription start site region 59951
Tssr59952 6 23085160 to 23085175 15 - TSS region transcription start site region 59952
Tssr59953 6 23085179 to 23085187 8 - TSS region transcription start site region 59953
Tssr59954 6 23096108 to 23096112 4 - TSS region transcription start site region 59954
Tssr59955 6 23098067 to 23098077 10 - TSS region transcription start site region 59955
Tssr59956 6 23098089 to 23098097 8 - TSS region transcription start site region 59956
Tssr59957 6 23098103 to 23098116 13 - TSS region transcription start site region 59957
Tssr59958 6 23122400 to 23122408 8 - TSS region transcription start site region 59958