Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:18358697-19338709

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39 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cttnbp2 6 18366478 to 18514843 148365 - protein coding gene cortactin binding protein 2
Tssr55109 6 18369270 to 18369271 1 + TSS region transcription start site region 55109
Tssr59916 6 18388054 to 18388077 23 - TSS region transcription start site region 59916
Tssr59917 6 18388160 to 18388164 4 - TSS region transcription start site region 59917
Tssr59918 6 18407877 to 18407881 4 - TSS region transcription start site region 59918
Gm15594 6 18424684 to 18427885 3201 + antisense lncRNA gene predicted gene 15594
Gm43843 6 18429659 to 18431245 1586 - unclassified gene predicted gene 43843
Gm40356 6 18437119 to 18448240 11121 + lncRNA gene predicted gene, 40356
Tssr59919 6 18443853 to 18443856 3 - TSS region transcription start site region 59919
Gm26233 6 18449271 to 18449340 69 - miRNA gene predicted gene, 26233
Cpgi17185 6 18514140 to 18515188 1048 CpG island CpG island 17185
Tssr59920 6 18514741 to 18514770 29 - TSS region transcription start site region 59920
Tssr59921 6 18514778 to 18514789 11 - TSS region transcription start site region 59921
Tssr59922 6 18514802 to 18514860 58 - TSS region transcription start site region 59922
Gm23648 6 18727292 to 18727398 106 + snRNA gene predicted gene, 23648
D6Mit232 6 18778957 to 18779181 224 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 232
Gm43228 6 18792851 to 18793114 263 + pseudogene predicted gene 43228
Tssr59923 6 18813883 to 18813912 29 - TSS region transcription start site region 59923
Gm5874 6 18824552 to 18825059 507 + pseudogene predicted gene 5874
Gm26809 6 18844220 to 18847360 3140 + lincRNA gene predicted gene, 26809
Gm20186 6 18845910 to 18848207 2297 - lincRNA gene predicted gene, 20186
Cpgi17186 6 18848268 to 18849042 774 CpG island CpG island 17186
Tssr59924 6 18848452 to 18848538 86 - TSS region transcription start site region 59924
Tssr55110 6 18848571 to 18848582 11 + TSS region transcription start site region 55110
Tssr55111 6 18848584 to 18848600 16 + TSS region transcription start site region 55111
Tssr55112 6 18848604 to 18848693 89 + TSS region transcription start site region 55112
Lsm8 6 18848635 to 18854052 5417 + protein coding gene LSM8 homolog, U6 small nuclear RNA associated
Tssr55113 6 18848697 to 18848709 12 + TSS region transcription start site region 55113
Tssr55114 6 18853646 to 18853668 22 + TSS region transcription start site region 55114
Tssr55115 6 18866309 to 18866333 24 + TSS region transcription start site region 55115
Ankrd7 6 18866318 to 18879586 13268 + protein coding gene ankyrin repeat domain 7
Tssr55116 6 18866342 to 18866355 13 + TSS region transcription start site region 55116
Tssr55117 6 18866367 to 18866371 4 + TSS region transcription start site region 55117
Tssr55118 6 18866387 to 18866391 4 + TSS region transcription start site region 55118
Gm43498 6 18882711 to 18884196 1485 + pseudogene predicted gene 43498
Gm22718 6 19046837 to 19047151 314 + unclassified non-coding RNA gene predicted gene, 22718
Gm6655 6 19119469 to 19120777 1308 + pseudogene predicted gene 6655
4930524B17Rik 6 19247899 to 19278843 30944 - lincRNA gene RIKEN cDNA 4930524B17 gene
Eif3s6-ps4 6 19318021 to 19319400 1379 - pseudogene eukaryotic translation initiation factor 3, subunit 6, pseudogene 4