Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:17972119-18913240

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D6Rck2 6 17985976 to 17986162 186 DNA segment DNA segment, Chr 6, Rockefeller University 2
Wnt2 6 17988940 to 18030585 41645 - protein coding gene wingless-type MMTV integration site family, member 2
Mdq13 6 18014442 to 18014442 0 QTL mammary ductal QTL 13
Cpgi17181 6 18030112 to 18030816 704 CpG island CpG island 17181
Tssr59910 6 18030344 to 18030389 45 - TSS region transcription start site region 59910
Tssr59911 6 18030393 to 18030403 10 - TSS region transcription start site region 59911
Tssr59912 6 18030435 to 18030460 25 - TSS region transcription start site region 59912
Cpgi17182 6 18031509 to 18032107 598 CpG island CpG island 17182
Asz1 6 18050964 to 18109061 58097 - protein coding gene ankyrin repeat, SAM and basic leucine zipper domain containing 1
Cpgi17183 6 18108833 to 18109264 431 CpG island CpG island 17183
Tssr59913 6 18109038 to 18109062 24 - TSS region transcription start site region 59913
Tssr59914 6 18109063 to 18109084 21 - TSS region transcription start site region 59914
Tssr59915 6 18109113 to 18109118 5 - TSS region transcription start site region 59915
Tssr55101 6 18109159 to 18109179 20 + TSS region transcription start site region 55101
Gm43845 6 18110142 to 18111961 1819 - unclassified gene predicted gene 43845
Gm15593 6 18144734 to 18145741 1007 + pseudogene predicted gene 15593
Gm15596 6 18156340 to 18157120 780 - pseudogene predicted gene 15596
Tssr55102 6 18169791 to 18169812 21 + TSS region transcription start site region 55102
Tssr55103 6 18169814 to 18169833 19 + TSS region transcription start site region 55103
Tssr1787 6 18169838 to 18169844 6 + TSS region transcription start site region 1787
Cpgi17184 6 18170239 to 18170842 603 CpG island CpG island 17184
Tssr55104 6 18170560 to 18170620 60 + TSS region transcription start site region 55104
Cftr 6 18170687 to 18322768 152081 + protein coding gene cystic fibrosis transmembrane conductance regulator
Tssr55105 6 18170742 to 18170756 14 + TSS region transcription start site region 55105
Tssr55106 6 18170758 to 18170780 22 + TSS region transcription start site region 55106
Tssr55107 6 18170782 to 18170798 16 + TSS region transcription start site region 55107
Dbts1 6 18234148 to 73387692 55153544 QTL diabetes 1
D6Mit236 6 18234148 to 18234291 143 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 236
Gm15592 6 18270136 to 18289048 18912 - antisense lncRNA gene predicted gene 15592
Gm15595 6 18294265 to 18295213 948 + pseudogene predicted gene 15595
Tssr55108 6 18335749 to 18335759 10 + TSS region transcription start site region 55108
Cttnbp2 6 18366478 to 18514843 148365 - protein coding gene cortactin binding protein 2
Tssr55109 6 18369270 to 18369271 1 + TSS region transcription start site region 55109
Tssr59916 6 18388054 to 18388077 23 - TSS region transcription start site region 59916
Tssr59917 6 18388160 to 18388164 4 - TSS region transcription start site region 59917
Tssr59918 6 18407877 to 18407881 4 - TSS region transcription start site region 59918
Gm15594 6 18424684 to 18427885 3201 + antisense lncRNA gene predicted gene 15594
Gm43843 6 18429659 to 18431245 1586 - unclassified gene predicted gene 43843
Gm40356 6 18437119 to 18448240 11121 + lncRNA gene predicted gene, 40356
Tssr59919 6 18443853 to 18443856 3 - TSS region transcription start site region 59919
Gm26233 6 18449271 to 18449340 69 - miRNA gene predicted gene, 26233
Cpgi17185 6 18514140 to 18515188 1048 CpG island CpG island 17185
Tssr59920 6 18514741 to 18514770 29 - TSS region transcription start site region 59920
Tssr59921 6 18514778 to 18514789 11 - TSS region transcription start site region 59921
Tssr59922 6 18514802 to 18514860 58 - TSS region transcription start site region 59922
Gm23648 6 18727292 to 18727398 106 + snRNA gene predicted gene, 23648
D6Mit232 6 18778957 to 18779181 224 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 232
Gm43228 6 18792851 to 18793114 263 + pseudogene predicted gene 43228
Tssr59923 6 18813883 to 18813912 29 - TSS region transcription start site region 59923
Gm5874 6 18824552 to 18825059 507 + pseudogene predicted gene 5874
Gm26809 6 18844220 to 18847360 3140 + lincRNA gene predicted gene, 26809
Gm20186 6 18845910 to 18848207 2297 - lincRNA gene predicted gene, 20186
Cpgi17186 6 18848268 to 18849042 774 CpG island CpG island 17186
Tssr59924 6 18848452 to 18848538 86 - TSS region transcription start site region 59924
Tssr55110 6 18848571 to 18848582 11 + TSS region transcription start site region 55110
Tssr55111 6 18848584 to 18848600 16 + TSS region transcription start site region 55111
Tssr55112 6 18848604 to 18848693 89 + TSS region transcription start site region 55112
Lsm8 6 18848635 to 18854052 5417 + protein coding gene LSM8 homolog, U6 small nuclear RNA associated
Tssr55113 6 18848697 to 18848709 12 + TSS region transcription start site region 55113
Tssr55114 6 18853646 to 18853668 22 + TSS region transcription start site region 55114
Tssr55115 6 18866309 to 18866333 24 + TSS region transcription start site region 55115
Ankrd7 6 18866318 to 18879586 13268 + protein coding gene ankyrin repeat domain 7
Tssr55116 6 18866342 to 18866355 13 + TSS region transcription start site region 55116
Tssr55117 6 18866367 to 18866371 4 + TSS region transcription start site region 55117
Tssr55118 6 18866387 to 18866391 4 + TSS region transcription start site region 55118
Gm43498 6 18882711 to 18884196 1485 + pseudogene predicted gene 43498