Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:17639814-18699833

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91 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Capza2 6 17637098 to 17666534 29436 + protein coding gene capping protein (actin filament) muscle Z-line, alpha 2
Tssr55077 6 17641604 to 17641607 3 + TSS region transcription start site region 55077
Tssr55078 6 17648509 to 17648551 42 + TSS region transcription start site region 55078
Tssr59908 6 17655211 to 17655249 38 - TSS region transcription start site region 59908
Tssr55079 6 17662013 to 17662023 10 + TSS region transcription start site region 55079
Tssr55080 6 17666046 to 17666074 28 + TSS region transcription start site region 55080
Tssr55081 6 17666132 to 17666154 22 + TSS region transcription start site region 55081
Tssr55082 6 17666186 to 17666206 20 + TSS region transcription start site region 55082
Tssr55083 6 17666260 to 17666279 19 + TSS region transcription start site region 55083
Tssr55084 6 17666672 to 17666686 14 + TSS region transcription start site region 55084
St7 6 17692940 to 17943023 250083 + protein coding gene suppression of tumorigenicity 7
Gm27755 6 17693426 to 17693557 131 + unclassified non-coding RNA gene predicted gene, 27755
Tssr55085 6 17693607 to 17693618 11 + TSS region transcription start site region 55085
Cpgi17178 6 17693675 to 17694984 1309 CpG island CpG island 17178
Tssr55086 6 17693905 to 17693937 32 + TSS region transcription start site region 55086
Gm27762 6 17693937 to 17694045 108 + unclassified non-coding RNA gene predicted gene, 27762
Tssr55087 6 17693965 to 17693989 24 + TSS region transcription start site region 55087
Tssr55088 6 17694005 to 17694025 20 + TSS region transcription start site region 55088
Tssr55089 6 17694051 to 17694091 40 + TSS region transcription start site region 55089
Tssr55090 6 17694170 to 17694179 9 + TSS region transcription start site region 55090
Tssr59909 6 17694695 to 17694714 19 - TSS region transcription start site region 59909
Gm27960 6 17694902 to 17695085 183 + unclassified non-coding RNA gene predicted gene, 27960
Gm27365 6 17695354 to 17695530 176 + unclassified non-coding RNA gene predicted gene, 27365
Gm27542 6 17696894 to 17697149 255 + unclassified non-coding RNA gene predicted gene, 27542
Gm28008 6 17703231 to 17703416 185 + unclassified non-coding RNA gene predicted gene, 28008
Gm13898 6 17710598 to 17711207 609 - pseudogene predicted gene 13898
Cpgi17179 6 17710846 to 17711062 216 CpG island CpG island 17179
Gm13899 6 17711687 to 17712724 1037 - pseudogene predicted gene 13899
Gm43533 6 17717578 to 17720513 2935 + unclassified gene predicted gene 43533
Tssr55091 6 17725342 to 17725346 4 + TSS region transcription start site region 55091
Tssr55092 6 17731220 to 17731254 34 + TSS region transcription start site region 55092
Tssr55093 6 17743582 to 17743593 11 + TSS region transcription start site region 55093
Tssr55094 6 17743594 to 17743613 19 + TSS region transcription start site region 55094
Gm42852 6 17747522 to 17748900 1378 - unclassified gene predicted gene 42852
Tssr55095 6 17749003 to 17749022 19 + TSS region transcription start site region 55095
Tssr1786 6 17749088 to 17749103 15 + TSS region transcription start site region 1786
Tssr55096 6 17749140 to 17749151 11 + TSS region transcription start site region 55096
Tssr55097 6 17749172 to 17749265 93 + TSS region transcription start site region 55097
Tssr55098 6 17749568 to 17749572 4 + TSS region transcription start site region 55098
Tssr55099 6 17762881 to 17762885 4 + TSS region transcription start site region 55099
Tssr55100 6 17822963 to 17822988 25 + TSS region transcription start site region 55100
Gm26738 6 17834585 to 17835185 600 - antisense lncRNA gene predicted gene, 26738
Cpgi17180 6 17840402 to 17840995 593 CpG island CpG island 17180
Gm27444 6 17905707 to 17905843 136 + unclassified non-coding RNA gene predicted gene, 27444
Gm27402 6 17907172 to 17907291 119 + unclassified non-coding RNA gene predicted gene, 27402
Gm43844 6 17914996 to 17920600 5604 + unclassified gene predicted gene 43844
D6Rck2 6 17985976 to 17986162 186 DNA segment DNA segment, Chr 6, Rockefeller University 2
Wnt2 6 17988940 to 18030585 41645 - protein coding gene wingless-type MMTV integration site family, member 2
Mdq13 6 18014442 to 18014442 0 QTL mammary ductal QTL 13
Cpgi17181 6 18030112 to 18030816 704 CpG island CpG island 17181
Tssr59910 6 18030344 to 18030389 45 - TSS region transcription start site region 59910
Tssr59911 6 18030393 to 18030403 10 - TSS region transcription start site region 59911
Tssr59912 6 18030435 to 18030460 25 - TSS region transcription start site region 59912
Cpgi17182 6 18031509 to 18032107 598 CpG island CpG island 17182
Asz1 6 18050964 to 18109061 58097 - protein coding gene ankyrin repeat, SAM and basic leucine zipper domain containing 1
Cpgi17183 6 18108833 to 18109264 431 CpG island CpG island 17183
Tssr59913 6 18109038 to 18109062 24 - TSS region transcription start site region 59913
Tssr59914 6 18109063 to 18109084 21 - TSS region transcription start site region 59914
Tssr59915 6 18109113 to 18109118 5 - TSS region transcription start site region 59915
Tssr55101 6 18109159 to 18109179 20 + TSS region transcription start site region 55101
Gm43845 6 18110142 to 18111961 1819 - unclassified gene predicted gene 43845
Gm15593 6 18144734 to 18145741 1007 + pseudogene predicted gene 15593
Gm15596 6 18156340 to 18157120 780 - pseudogene predicted gene 15596
Tssr55102 6 18169791 to 18169812 21 + TSS region transcription start site region 55102
Tssr55103 6 18169814 to 18169833 19 + TSS region transcription start site region 55103
Tssr1787 6 18169838 to 18169844 6 + TSS region transcription start site region 1787
Cpgi17184 6 18170239 to 18170842 603 CpG island CpG island 17184
Tssr55104 6 18170560 to 18170620 60 + TSS region transcription start site region 55104
Cftr 6 18170687 to 18322768 152081 + protein coding gene cystic fibrosis transmembrane conductance regulator
Tssr55105 6 18170742 to 18170756 14 + TSS region transcription start site region 55105
Tssr55106 6 18170758 to 18170780 22 + TSS region transcription start site region 55106
Tssr55107 6 18170782 to 18170798 16 + TSS region transcription start site region 55107
D6Mit236 6 18234148 to 18234291 143 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 236
Dbts1 6 18234148 to 73387692 55153544 QTL diabetes 1
Gm15592 6 18270136 to 18289048 18912 - antisense lncRNA gene predicted gene 15592
Gm15595 6 18294265 to 18295213 948 + pseudogene predicted gene 15595
Tssr55108 6 18335749 to 18335759 10 + TSS region transcription start site region 55108
Cttnbp2 6 18366478 to 18514843 148365 - protein coding gene cortactin binding protein 2
Tssr55109 6 18369270 to 18369271 1 + TSS region transcription start site region 55109
Tssr59916 6 18388054 to 18388077 23 - TSS region transcription start site region 59916
Tssr59917 6 18388160 to 18388164 4 - TSS region transcription start site region 59917
Tssr59918 6 18407877 to 18407881 4 - TSS region transcription start site region 59918
Gm15594 6 18424684 to 18427885 3201 + antisense lncRNA gene predicted gene 15594
Gm43843 6 18429659 to 18431245 1586 - unclassified gene predicted gene 43843
Gm40356 6 18437119 to 18448240 11121 + lncRNA gene predicted gene, 40356
Tssr59919 6 18443853 to 18443856 3 - TSS region transcription start site region 59919
Gm26233 6 18449271 to 18449340 69 - miRNA gene predicted gene, 26233
Cpgi17185 6 18514140 to 18515188 1048 CpG island CpG island 17185
Tssr59920 6 18514741 to 18514770 29 - TSS region transcription start site region 59920
Tssr59921 6 18514778 to 18514789 11 - TSS region transcription start site region 59921
Tssr59922 6 18514802 to 18514860 58 - TSS region transcription start site region 59922