Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:17381520-27281081

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459 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm15581 6 17206823 to 17385604 178781 - antisense lncRNA gene predicted gene 15581
Gm46953 6 17381909 to 17383948 2039 + lncRNA gene predicted gene, 46953
Tssr55048 6 17405900 to 17405903 3 + TSS region transcription start site region 55048
Tssr55049 6 17408333 to 17408351 18 + TSS region transcription start site region 55049
Gm25021 6 17436306 to 17436412 106 + snRNA gene predicted gene, 25021
Tssr59906 6 17459609 to 17459629 20 - TSS region transcription start site region 59906
Cpgi17176 6 17463315 to 17464494 1179 CpG island CpG island 17176
Tssr55050 6 17463432 to 17463442 10 + TSS region transcription start site region 55050
Tssr55051 6 17463555 to 17463581 26 + TSS region transcription start site region 55051
Tssr55052 6 17463749 to 17463809 60 + TSS region transcription start site region 55052
Met 6 17463800 to 17573980 110180 + protein coding gene met proto-oncogene
Tssr55053 6 17463826 to 17463829 3 + TSS region transcription start site region 55053
Tssr55054 6 17463885 to 17463898 13 + TSS region transcription start site region 55054
Tssr55055 6 17463901 to 17463906 5 + TSS region transcription start site region 55055
Tssr55056 6 17463927 to 17464071 144 + TSS region transcription start site region 55056
Tssr55057 6 17464092 to 17464113 21 + TSS region transcription start site region 55057
Tssr55058 6 17464132 to 17464149 17 + TSS region transcription start site region 55058
Tssr55059 6 17464171 to 17464174 3 + TSS region transcription start site region 55059
Tssr55060 6 17491128 to 17491144 16 + TSS region transcription start site region 55060
Tssr55061 6 17491216 to 17491242 26 + TSS region transcription start site region 55061
Tssr55062 6 17491268 to 17491273 5 + TSS region transcription start site region 55062
Tssr55063 6 17492874 to 17492891 17 + TSS region transcription start site region 55063
Tssr55064 6 17516227 to 17516232 5 + TSS region transcription start site region 55064
Tssr55065 6 17519699 to 17519730 31 + TSS region transcription start site region 55065
Tssr55066 6 17519758 to 17519802 44 + TSS region transcription start site region 55066
Tssr55067 6 17552061 to 17552062 1 + TSS region transcription start site region 55067
D6Mit157 6 17552943 to 17553136 193 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 157
D6Nds3 6 17553004 to 17553097 93 DNA segment DNA segment, Chr 6, Nuffield Department of Surgery 3
D730047N16Rik 6 17578066 to 17578828 762 unclassified gene RIKEN cDNA D730047N16 gene
Tssr59907 6 17634969 to 17634973 4 - TSS region transcription start site region 59907
Tssr55068 6 17635738 to 17635791 53 + TSS region transcription start site region 55068
Cpgi17177 6 17636696 to 17637610 914 CpG island CpG island 17177
Tssr55069 6 17637005 to 17637014 9 + TSS region transcription start site region 55069
Tssr55070 6 17637019 to 17637055 36 + TSS region transcription start site region 55070
Tssr55071 6 17637059 to 17637120 61 + TSS region transcription start site region 55071
Capza2 6 17637098 to 17666534 29436 + protein coding gene capping protein (actin filament) muscle Z-line, alpha 2
Tssr55072 6 17637671 to 17637678 7 + TSS region transcription start site region 55072
Tssr55073 6 17637770 to 17637783 13 + TSS region transcription start site region 55073
Tssr55074 6 17637799 to 17637812 13 + TSS region transcription start site region 55074
Tssr55075 6 17637840 to 17637889 49 + TSS region transcription start site region 55075
Tssr55076 6 17637895 to 17637911 16 + TSS region transcription start site region 55076
Tssr55077 6 17641604 to 17641607 3 + TSS region transcription start site region 55077
Tssr55078 6 17648509 to 17648551 42 + TSS region transcription start site region 55078
Tssr59908 6 17655211 to 17655249 38 - TSS region transcription start site region 59908
Tssr55079 6 17662013 to 17662023 10 + TSS region transcription start site region 55079
Tssr55080 6 17666046 to 17666074 28 + TSS region transcription start site region 55080
Tssr55081 6 17666132 to 17666154 22 + TSS region transcription start site region 55081
Tssr55082 6 17666186 to 17666206 20 + TSS region transcription start site region 55082
Tssr55083 6 17666260 to 17666279 19 + TSS region transcription start site region 55083
Tssr55084 6 17666672 to 17666686 14 + TSS region transcription start site region 55084
St7 6 17692940 to 17943023 250083 + protein coding gene suppression of tumorigenicity 7
Gm27755 6 17693426 to 17693557 131 + unclassified non-coding RNA gene predicted gene, 27755
Tssr55085 6 17693607 to 17693618 11 + TSS region transcription start site region 55085
Cpgi17178 6 17693675 to 17694984 1309 CpG island CpG island 17178
Tssr55086 6 17693905 to 17693937 32 + TSS region transcription start site region 55086
Gm27762 6 17693937 to 17694045 108 + unclassified non-coding RNA gene predicted gene, 27762
Tssr55087 6 17693965 to 17693989 24 + TSS region transcription start site region 55087
Tssr55088 6 17694005 to 17694025 20 + TSS region transcription start site region 55088
Tssr55089 6 17694051 to 17694091 40 + TSS region transcription start site region 55089
Tssr55090 6 17694170 to 17694179 9 + TSS region transcription start site region 55090
Tssr59909 6 17694695 to 17694714 19 - TSS region transcription start site region 59909
Gm27960 6 17694902 to 17695085 183 + unclassified non-coding RNA gene predicted gene, 27960
Gm27365 6 17695354 to 17695530 176 + unclassified non-coding RNA gene predicted gene, 27365
Gm27542 6 17696894 to 17697149 255 + unclassified non-coding RNA gene predicted gene, 27542
Gm28008 6 17703231 to 17703416 185 + unclassified non-coding RNA gene predicted gene, 28008
Gm13898 6 17710598 to 17711207 609 - pseudogene predicted gene 13898
Cpgi17179 6 17710846 to 17711062 216 CpG island CpG island 17179
Gm13899 6 17711687 to 17712724 1037 - pseudogene predicted gene 13899
Gm43533 6 17717578 to 17720513 2935 + unclassified gene predicted gene 43533
Tssr55091 6 17725342 to 17725346 4 + TSS region transcription start site region 55091
Tssr55092 6 17731220 to 17731254 34 + TSS region transcription start site region 55092
Tssr55093 6 17743582 to 17743593 11 + TSS region transcription start site region 55093
Tssr55094 6 17743594 to 17743613 19 + TSS region transcription start site region 55094
Gm42852 6 17747522 to 17748900 1378 - unclassified gene predicted gene 42852
Tssr55095 6 17749003 to 17749022 19 + TSS region transcription start site region 55095
Tssr1786 6 17749088 to 17749103 15 + TSS region transcription start site region 1786
Tssr55096 6 17749140 to 17749151 11 + TSS region transcription start site region 55096
Tssr55097 6 17749172 to 17749265 93 + TSS region transcription start site region 55097
Tssr55098 6 17749568 to 17749572 4 + TSS region transcription start site region 55098
Tssr55099 6 17762881 to 17762885 4 + TSS region transcription start site region 55099
Tssr55100 6 17822963 to 17822988 25 + TSS region transcription start site region 55100
Gm26738 6 17834585 to 17835185 600 - antisense lncRNA gene predicted gene, 26738
Cpgi17180 6 17840402 to 17840995 593 CpG island CpG island 17180
Gm27444 6 17905707 to 17905843 136 + unclassified non-coding RNA gene predicted gene, 27444
Gm27402 6 17907172 to 17907291 119 + unclassified non-coding RNA gene predicted gene, 27402
Gm43844 6 17914996 to 17920600 5604 + unclassified gene predicted gene 43844
D6Rck2 6 17985976 to 17986162 186 DNA segment DNA segment, Chr 6, Rockefeller University 2
Wnt2 6 17988940 to 18030585 41645 - protein coding gene wingless-type MMTV integration site family, member 2
Mdq13 6 18014442 to 18014442 0 QTL mammary ductal QTL 13
Cpgi17181 6 18030112 to 18030816 704 CpG island CpG island 17181
Tssr59910 6 18030344 to 18030389 45 - TSS region transcription start site region 59910
Tssr59911 6 18030393 to 18030403 10 - TSS region transcription start site region 59911
Tssr59912 6 18030435 to 18030460 25 - TSS region transcription start site region 59912
Cpgi17182 6 18031509 to 18032107 598 CpG island CpG island 17182
Asz1 6 18050964 to 18109061 58097 - protein coding gene ankyrin repeat, SAM and basic leucine zipper domain containing 1
Cpgi17183 6 18108833 to 18109264 431 CpG island CpG island 17183
Tssr59913 6 18109038 to 18109062 24 - TSS region transcription start site region 59913
Tssr59914 6 18109063 to 18109084 21 - TSS region transcription start site region 59914
Tssr59915 6 18109113 to 18109118 5 - TSS region transcription start site region 59915
Tssr55101 6 18109159 to 18109179 20 + TSS region transcription start site region 55101
Gm43845 6 18110142 to 18111961 1819 - unclassified gene predicted gene 43845
Gm15593 6 18144734 to 18145741 1007 + pseudogene predicted gene 15593
Gm15596 6 18156340 to 18157120 780 - pseudogene predicted gene 15596
Tssr55102 6 18169791 to 18169812 21 + TSS region transcription start site region 55102
Tssr55103 6 18169814 to 18169833 19 + TSS region transcription start site region 55103
Tssr1787 6 18169838 to 18169844 6 + TSS region transcription start site region 1787
Cpgi17184 6 18170239 to 18170842 603 CpG island CpG island 17184
Tssr55104 6 18170560 to 18170620 60 + TSS region transcription start site region 55104
Cftr 6 18170687 to 18322768 152081 + protein coding gene cystic fibrosis transmembrane conductance regulator
Tssr55105 6 18170742 to 18170756 14 + TSS region transcription start site region 55105
Tssr55106 6 18170758 to 18170780 22 + TSS region transcription start site region 55106
Tssr55107 6 18170782 to 18170798 16 + TSS region transcription start site region 55107
Dbts1 6 18234148 to 73387692 55153544 QTL diabetes 1
D6Mit236 6 18234148 to 18234291 143 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 236
Gm15592 6 18270136 to 18289048 18912 - antisense lncRNA gene predicted gene 15592
Gm15595 6 18294265 to 18295213 948 + pseudogene predicted gene 15595
Tssr55108 6 18335749 to 18335759 10 + TSS region transcription start site region 55108
Cttnbp2 6 18366478 to 18514843 148365 - protein coding gene cortactin binding protein 2
Tssr55109 6 18369270 to 18369271 1 + TSS region transcription start site region 55109
Tssr59916 6 18388054 to 18388077 23 - TSS region transcription start site region 59916
Tssr59917 6 18388160 to 18388164 4 - TSS region transcription start site region 59917
Tssr59918 6 18407877 to 18407881 4 - TSS region transcription start site region 59918
Gm15594 6 18424684 to 18427885 3201 + antisense lncRNA gene predicted gene 15594
Gm43843 6 18429659 to 18431245 1586 - unclassified gene predicted gene 43843
Gm40356 6 18437119 to 18448240 11121 + lncRNA gene predicted gene, 40356
Tssr59919 6 18443853 to 18443856 3 - TSS region transcription start site region 59919
Gm26233 6 18449271 to 18449340 69 - miRNA gene predicted gene, 26233
Cpgi17185 6 18514140 to 18515188 1048 CpG island CpG island 17185
Tssr59920 6 18514741 to 18514770 29 - TSS region transcription start site region 59920
Tssr59921 6 18514778 to 18514789 11 - TSS region transcription start site region 59921
Tssr59922 6 18514802 to 18514860 58 - TSS region transcription start site region 59922
Gm23648 6 18727292 to 18727398 106 + snRNA gene predicted gene, 23648
D6Mit232 6 18778957 to 18779181 224 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 232
Gm43228 6 18792851 to 18793114 263 + pseudogene predicted gene 43228
Tssr59923 6 18813883 to 18813912 29 - TSS region transcription start site region 59923
Gm5874 6 18824552 to 18825059 507 + pseudogene predicted gene 5874
Gm26809 6 18844220 to 18847360 3140 + lincRNA gene predicted gene, 26809
Gm20186 6 18845910 to 18848207 2297 - lincRNA gene predicted gene, 20186
Cpgi17186 6 18848268 to 18849042 774 CpG island CpG island 17186
Tssr59924 6 18848452 to 18848538 86 - TSS region transcription start site region 59924
Tssr55110 6 18848571 to 18848582 11 + TSS region transcription start site region 55110
Tssr55111 6 18848584 to 18848600 16 + TSS region transcription start site region 55111
Tssr55112 6 18848604 to 18848693 89 + TSS region transcription start site region 55112
Lsm8 6 18848635 to 18854052 5417 + protein coding gene LSM8 homolog, U6 small nuclear RNA associated
Tssr55113 6 18848697 to 18848709 12 + TSS region transcription start site region 55113
Tssr55114 6 18853646 to 18853668 22 + TSS region transcription start site region 55114
Tssr55115 6 18866309 to 18866333 24 + TSS region transcription start site region 55115
Ankrd7 6 18866318 to 18879586 13268 + protein coding gene ankyrin repeat domain 7
Tssr55116 6 18866342 to 18866355 13 + TSS region transcription start site region 55116
Tssr55117 6 18866367 to 18866371 4 + TSS region transcription start site region 55117
Tssr55118 6 18866387 to 18866391 4 + TSS region transcription start site region 55118
Gm43498 6 18882711 to 18884196 1485 + pseudogene predicted gene 43498
Gm22718 6 19046837 to 19047151 314 + unclassified non-coding RNA gene predicted gene, 22718
Gm6655 6 19119469 to 19120777 1308 + pseudogene predicted gene 6655
4930524B17Rik 6 19247899 to 19278843 30944 - lincRNA gene RIKEN cDNA 4930524B17 gene
Eif3s6-ps4 6 19318021 to 19319400 1379 - pseudogene eukaryotic translation initiation factor 3, subunit 6, pseudogene 4
Gm24213 6 19341329 to 19341586 257 - unclassified non-coding RNA gene predicted gene, 24213
Mir6370 6 19555342 to 19555461 119 + miRNA gene microRNA 6370
Gm22828 6 19624609 to 19624715 106 + snRNA gene predicted gene, 22828
D6Mit346 6 19691866 to 19691982 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 346
Gm18482 6 19773975 to 19777551 3576 - pseudogene predicted gene, 18482
Gm43501 6 19784686 to 19784792 106 + pseudogene predicted gene 43501
Gm42581 6 19788053 to 19789018 965 + pseudogene predicted gene 42581
D6Mit167 6 19814700 to 19814829 129 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 167
D6Mit88 6 19912686 to 19912833 147 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 88
Sxbq2 6 19912686 to 71322775 51410089 QTL SGC/Knj cross B6 QTL 2
Gm29798 6 20490539 to 20495809 5270 + pseudogene predicted gene, 29798
Gm38772 6 20950147 to 20970378 20231 - lncRNA gene predicted gene, 38772
Tssr59925 6 20970335 to 20970352 17 - TSS region transcription start site region 59925
Gm19102 6 20970438 to 20970990 552 - pseudogene predicted gene, 19102
Gm23960 6 21013112 to 21013242 130 - snoRNA gene predicted gene, 23960
Tssr59926 6 21013159 to 21013195 36 - TSS region transcription start site region 59926
Gm26373 6 21128156 to 21128258 102 + snRNA gene predicted gene, 26373
Cpgi17187 6 21214470 to 21215893 1423 CpG island CpG island 17187
Tssr55119 6 21214573 to 21214600 27 + TSS region transcription start site region 55119
Tssr55120 6 21214821 to 21214859 38 + TSS region transcription start site region 55120
Tssr55121 6 21214866 to 21214907 41 + TSS region transcription start site region 55121
Tssr55122 6 21215331 to 21215353 22 + TSS region transcription start site region 55122
Tssr55123 6 21215358 to 21215387 29 + TSS region transcription start site region 55123
Tssr55124 6 21215414 to 21215435 21 + TSS region transcription start site region 55124
Tssr55125 6 21215472 to 21215484 12 + TSS region transcription start site region 55125
Tssr55126 6 21215552 to 21215563 11 + TSS region transcription start site region 55126
Kcnd2 6 21216109 to 21729805 513696 + protein coding gene potassium voltage-gated channel, Shal-related family, member 2
Tssr55127 6 21233444 to 21233447 3 + TSS region transcription start site region 55127
6430519N07Rik 6 21233597 to 21236172 2575 unclassified non-coding RNA gene RIKEN cDNA 6430519N07 gene
D6Mit266 6 21249207 to 21249326 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 266
Smdq3 6 21249207 to 21249326 119 QTL segregation of mitochondrial DNA QTL 3
Gm42583 6 21258921 to 21265620 6699 + unclassified gene predicted gene 42583
6330436F06Rik 6 21274964 to 21276564 1600 unclassified non-coding RNA gene RIKEN cDNA 6330436F06 gene
6330510M09Rik 6 21282099 to 21283561 1462 unclassified gene RIKEN cDNA 6330510M09 gene
Tssr55128 6 21283421 to 21283425 4 + TSS region transcription start site region 55128
Tssr55129 6 21307870 to 21307877 7 + TSS region transcription start site region 55129
Tssr55130 6 21312145 to 21312165 20 + TSS region transcription start site region 55130
Tssr55131 6 21312206 to 21312219 13 + TSS region transcription start site region 55131
Tssr55132 6 21344535 to 21344539 4 + TSS region transcription start site region 55132
6720467L15Rik 6 21352116 to 21354596 2480 unclassified non-coding RNA gene RIKEN cDNA 6720467L15 gene
Tssr55133 6 21384655 to 21384660 5 + TSS region transcription start site region 55133
Tssr55134 6 21468593 to 21468604 11 + TSS region transcription start site region 55134
D6Mit306 6 21480933 to 21481056 123 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 306
tint 6 21480933 to 30647293 9166360 heritable phenotypic marker tail interaction with T complex