Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:16976415-17636430

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm15473 6 17058806 to 17064996 6190 - lincRNA gene predicted gene 15473
Cpgi17172 6 17064841 to 17065782 941 CpG island CpG island 17172
Tssr55024 6 17065129 to 17065233 104 + TSS region transcription start site region 55024
Tes 6 17065149 to 17105825 40676 + protein coding gene testis derived transcript
Tssr59903 6 17065464 to 17065509 45 - TSS region transcription start site region 59903
Gm4876 6 17086610 to 17094502 7892 - antisense lncRNA gene predicted gene 4876
D6Mit347 6 17095940 to 17096059 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 347
Tssr55025 6 17105329 to 17105377 48 + TSS region transcription start site region 55025
Tssr59904 6 17171567 to 17171578 11 - TSS region transcription start site region 59904
Tssr59905 6 17171579 to 17171621 42 - TSS region transcription start site region 59905
D830026I12Rik 6 17197751 to 17205695 7944 + lincRNA gene RIKEN cDNA D830026I12 gene
Tssr55026 6 17198101 to 17198110 9 + TSS region transcription start site region 55026
Tssr55027 6 17206030 to 17206031 1 + TSS region transcription start site region 55027
Gm15581 6 17206823 to 17385604 178781 - antisense lncRNA gene predicted gene 15581
Cpgi17173 6 17280862 to 17281594 732 CpG island CpG island 17173
Cav2 6 17281185 to 17289115 7930 + protein coding gene caveolin 2
Tssr55028 6 17281191 to 17281204 13 + TSS region transcription start site region 55028
Tssr55029 6 17281216 to 17281227 11 + TSS region transcription start site region 55029
Tssr55030 6 17281277 to 17281286 9 + TSS region transcription start site region 55030
Tssr55031 6 17281304 to 17281364 60 + TSS region transcription start site region 55031
Tssr55032 6 17287034 to 17287047 13 + TSS region transcription start site region 55032
Tssr1784 6 17306140 to 17306188 48 + TSS region transcription start site region 1784
Cpgi17174 6 17306187 to 17306941 754 CpG island CpG island 17174
Cav1 6 17306335 to 17341328 34993 + protein coding gene caveolin 1, caveolae protein
Tssr1785 6 17306374 to 17306379 5 + TSS region transcription start site region 1785
Tssr55033 6 17306380 to 17306407 27 + TSS region transcription start site region 55033
Tssr55034 6 17306415 to 17306430 15 + TSS region transcription start site region 55034
Tssr55035 6 17307040 to 17307085 45 + TSS region transcription start site region 55035
Tssr55036 6 17307254 to 17307270 16 + TSS region transcription start site region 55036
Tssr55037 6 17307272 to 17307287 15 + TSS region transcription start site region 55037
Cpgi17175 6 17307474 to 17308009 535 CpG island CpG island 17175
Tssr55038 6 17307632 to 17307651 19 + TSS region transcription start site region 55038
Tssr55039 6 17307659 to 17307744 85 + TSS region transcription start site region 55039
Tssr55040 6 17307746 to 17307750 4 + TSS region transcription start site region 55040
Tssr55041 6 17307772 to 17307778 6 + TSS region transcription start site region 55041
Tssr55042 6 17307878 to 17307893 15 + TSS region transcription start site region 55042
Tssr55043 6 17307899 to 17307921 22 + TSS region transcription start site region 55043
Tssr55044 6 17307943 to 17307959 16 + TSS region transcription start site region 55044
Tssr55045 6 17335359 to 17335363 4 + TSS region transcription start site region 55045
D6Mit50 6 17337037 to 17337207 170 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 50
Tssr55046 6 17339478 to 17339493 15 + TSS region transcription start site region 55046
Tssr55047 6 17340088 to 17340096 8 + TSS region transcription start site region 55047
Gm29591 6 17347733 to 17348340 607 + lincRNA gene predicted gene 29591
Gm46953 6 17381909 to 17383948 2039 + lncRNA gene predicted gene, 46953
Tssr55048 6 17405900 to 17405903 3 + TSS region transcription start site region 55048
Tssr55049 6 17408333 to 17408351 18 + TSS region transcription start site region 55049
Gm25021 6 17436306 to 17436412 106 + snRNA gene predicted gene, 25021
Tssr59906 6 17459609 to 17459629 20 - TSS region transcription start site region 59906
Cpgi17176 6 17463315 to 17464494 1179 CpG island CpG island 17176
Tssr55050 6 17463432 to 17463442 10 + TSS region transcription start site region 55050
Tssr55051 6 17463555 to 17463581 26 + TSS region transcription start site region 55051
Tssr55052 6 17463749 to 17463809 60 + TSS region transcription start site region 55052
Met 6 17463800 to 17573980 110180 + protein coding gene met proto-oncogene
Tssr55053 6 17463826 to 17463829 3 + TSS region transcription start site region 55053
Tssr55054 6 17463885 to 17463898 13 + TSS region transcription start site region 55054
Tssr55055 6 17463901 to 17463906 5 + TSS region transcription start site region 55055
Tssr55056 6 17463927 to 17464071 144 + TSS region transcription start site region 55056
Tssr55057 6 17464092 to 17464113 21 + TSS region transcription start site region 55057
Tssr55058 6 17464132 to 17464149 17 + TSS region transcription start site region 55058
Tssr55059 6 17464171 to 17464174 3 + TSS region transcription start site region 55059
Tssr55060 6 17491128 to 17491144 16 + TSS region transcription start site region 55060
Tssr55061 6 17491216 to 17491242 26 + TSS region transcription start site region 55061
Tssr55062 6 17491268 to 17491273 5 + TSS region transcription start site region 55062
Tssr55063 6 17492874 to 17492891 17 + TSS region transcription start site region 55063
Tssr55064 6 17516227 to 17516232 5 + TSS region transcription start site region 55064
Tssr55065 6 17519699 to 17519730 31 + TSS region transcription start site region 55065
Tssr55066 6 17519758 to 17519802 44 + TSS region transcription start site region 55066
Tssr55067 6 17552061 to 17552062 1 + TSS region transcription start site region 55067
D6Mit157 6 17552943 to 17553136 193 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 157
D6Nds3 6 17553004 to 17553097 93 DNA segment DNA segment, Chr 6, Nuffield Department of Surgery 3
D730047N16Rik 6 17578066 to 17578828 762 unclassified gene RIKEN cDNA D730047N16 gene
Tssr59907 6 17634969 to 17634973 4 - TSS region transcription start site region 59907
Tssr55068 6 17635738 to 17635791 53 + TSS region transcription start site region 55068