Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:16847098-18456534

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tfec 6 16833373 to 16898441 65068 - protein coding gene transcription factor EC
Tssr59894 6 16852355 to 16852367 12 - TSS region transcription start site region 59894
Tssr59895 6 16855948 to 16856002 54 - TSS region transcription start site region 59895
Tssr59896 6 16884018 to 16884029 11 - TSS region transcription start site region 59896
Tssr59897 6 16898309 to 16898318 9 - TSS region transcription start site region 59897
Tssr59898 6 16898347 to 16898391 44 - TSS region transcription start site region 59898
Tssr59899 6 16898395 to 16898416 21 - TSS region transcription start site region 59899
Tssr59900 6 16898418 to 16898436 18 - TSS region transcription start site region 59900
Tssr59901 6 16898443 to 16898459 16 - TSS region transcription start site region 59901
Tssr59902 6 16898460 to 16898471 11 - TSS region transcription start site region 59902
Gm5721 6 16925231 to 16926919 1688 + pseudogene predicted gene 5721
Gm15473 6 17058806 to 17064996 6190 - lincRNA gene predicted gene 15473
Cpgi17172 6 17064841 to 17065782 941 CpG island CpG island 17172
Tssr55024 6 17065129 to 17065233 104 + TSS region transcription start site region 55024
Tes 6 17065149 to 17105825 40676 + protein coding gene testis derived transcript
Tssr59903 6 17065464 to 17065509 45 - TSS region transcription start site region 59903
Gm4876 6 17086610 to 17094502 7892 - antisense lncRNA gene predicted gene 4876
D6Mit347 6 17095940 to 17096059 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 347
Tssr55025 6 17105329 to 17105377 48 + TSS region transcription start site region 55025
Tssr59904 6 17171567 to 17171578 11 - TSS region transcription start site region 59904
Tssr59905 6 17171579 to 17171621 42 - TSS region transcription start site region 59905
D830026I12Rik 6 17197751 to 17205695 7944 + lincRNA gene RIKEN cDNA D830026I12 gene
Tssr55026 6 17198101 to 17198110 9 + TSS region transcription start site region 55026
Tssr55027 6 17206030 to 17206031 1 + TSS region transcription start site region 55027
Gm15581 6 17206823 to 17385604 178781 - antisense lncRNA gene predicted gene 15581
Cpgi17173 6 17280862 to 17281594 732 CpG island CpG island 17173
Cav2 6 17281185 to 17289115 7930 + protein coding gene caveolin 2
Tssr55028 6 17281191 to 17281204 13 + TSS region transcription start site region 55028
Tssr55029 6 17281216 to 17281227 11 + TSS region transcription start site region 55029
Tssr55030 6 17281277 to 17281286 9 + TSS region transcription start site region 55030
Tssr55031 6 17281304 to 17281364 60 + TSS region transcription start site region 55031
Tssr55032 6 17287034 to 17287047 13 + TSS region transcription start site region 55032
Tssr1784 6 17306140 to 17306188 48 + TSS region transcription start site region 1784
Cpgi17174 6 17306187 to 17306941 754 CpG island CpG island 17174
Cav1 6 17306335 to 17341328 34993 + protein coding gene caveolin 1, caveolae protein
Tssr1785 6 17306374 to 17306379 5 + TSS region transcription start site region 1785
Tssr55033 6 17306380 to 17306407 27 + TSS region transcription start site region 55033
Tssr55034 6 17306415 to 17306430 15 + TSS region transcription start site region 55034
Tssr55035 6 17307040 to 17307085 45 + TSS region transcription start site region 55035
Tssr55036 6 17307254 to 17307270 16 + TSS region transcription start site region 55036
Tssr55037 6 17307272 to 17307287 15 + TSS region transcription start site region 55037
Cpgi17175 6 17307474 to 17308009 535 CpG island CpG island 17175
Tssr55038 6 17307632 to 17307651 19 + TSS region transcription start site region 55038
Tssr55039 6 17307659 to 17307744 85 + TSS region transcription start site region 55039
Tssr55040 6 17307746 to 17307750 4 + TSS region transcription start site region 55040
Tssr55041 6 17307772 to 17307778 6 + TSS region transcription start site region 55041
Tssr55042 6 17307878 to 17307893 15 + TSS region transcription start site region 55042
Tssr55043 6 17307899 to 17307921 22 + TSS region transcription start site region 55043
Tssr55044 6 17307943 to 17307959 16 + TSS region transcription start site region 55044
Tssr55045 6 17335359 to 17335363 4 + TSS region transcription start site region 55045
D6Mit50 6 17337037 to 17337207 170 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 50
Tssr55046 6 17339478 to 17339493 15 + TSS region transcription start site region 55046
Tssr55047 6 17340088 to 17340096 8 + TSS region transcription start site region 55047
Gm29591 6 17347733 to 17348340 607 + lincRNA gene predicted gene 29591
Gm46953 6 17381909 to 17383948 2039 + lncRNA gene predicted gene, 46953
Tssr55048 6 17405900 to 17405903 3 + TSS region transcription start site region 55048
Tssr55049 6 17408333 to 17408351 18 + TSS region transcription start site region 55049
Gm25021 6 17436306 to 17436412 106 + snRNA gene predicted gene, 25021
Tssr59906 6 17459609 to 17459629 20 - TSS region transcription start site region 59906
Cpgi17176 6 17463315 to 17464494 1179 CpG island CpG island 17176
Tssr55050 6 17463432 to 17463442 10 + TSS region transcription start site region 55050
Tssr55051 6 17463555 to 17463581 26 + TSS region transcription start site region 55051
Tssr55052 6 17463749 to 17463809 60 + TSS region transcription start site region 55052
Met 6 17463800 to 17573980 110180 + protein coding gene met proto-oncogene
Tssr55053 6 17463826 to 17463829 3 + TSS region transcription start site region 55053
Tssr55054 6 17463885 to 17463898 13 + TSS region transcription start site region 55054
Tssr55055 6 17463901 to 17463906 5 + TSS region transcription start site region 55055
Tssr55056 6 17463927 to 17464071 144 + TSS region transcription start site region 55056
Tssr55057 6 17464092 to 17464113 21 + TSS region transcription start site region 55057
Tssr55058 6 17464132 to 17464149 17 + TSS region transcription start site region 55058
Tssr55059 6 17464171 to 17464174 3 + TSS region transcription start site region 55059
Tssr55060 6 17491128 to 17491144 16 + TSS region transcription start site region 55060
Tssr55061 6 17491216 to 17491242 26 + TSS region transcription start site region 55061
Tssr55062 6 17491268 to 17491273 5 + TSS region transcription start site region 55062
Tssr55063 6 17492874 to 17492891 17 + TSS region transcription start site region 55063
Tssr55064 6 17516227 to 17516232 5 + TSS region transcription start site region 55064
Tssr55065 6 17519699 to 17519730 31 + TSS region transcription start site region 55065
Tssr55066 6 17519758 to 17519802 44 + TSS region transcription start site region 55066
Tssr55067 6 17552061 to 17552062 1 + TSS region transcription start site region 55067
D6Mit157 6 17552943 to 17553136 193 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 157
D6Nds3 6 17553004 to 17553097 93 DNA segment DNA segment, Chr 6, Nuffield Department of Surgery 3
D730047N16Rik 6 17578066 to 17578828 762 unclassified gene RIKEN cDNA D730047N16 gene
Tssr59907 6 17634969 to 17634973 4 - TSS region transcription start site region 59907
Tssr55068 6 17635738 to 17635791 53 + TSS region transcription start site region 55068
Cpgi17177 6 17636696 to 17637610 914 CpG island CpG island 17177
Tssr55069 6 17637005 to 17637014 9 + TSS region transcription start site region 55069
Tssr55070 6 17637019 to 17637055 36 + TSS region transcription start site region 55070
Tssr55071 6 17637059 to 17637120 61 + TSS region transcription start site region 55071
Capza2 6 17637098 to 17666534 29436 + protein coding gene capping protein (actin filament) muscle Z-line, alpha 2
Tssr55072 6 17637671 to 17637678 7 + TSS region transcription start site region 55072
Tssr55073 6 17637770 to 17637783 13 + TSS region transcription start site region 55073
Tssr55074 6 17637799 to 17637812 13 + TSS region transcription start site region 55074
Tssr55075 6 17637840 to 17637889 49 + TSS region transcription start site region 55075
Tssr55076 6 17637895 to 17637911 16 + TSS region transcription start site region 55076
Tssr55077 6 17641604 to 17641607 3 + TSS region transcription start site region 55077
Tssr55078 6 17648509 to 17648551 42 + TSS region transcription start site region 55078
Tssr59908 6 17655211 to 17655249 38 - TSS region transcription start site region 59908
Tssr55079 6 17662013 to 17662023 10 + TSS region transcription start site region 55079
Tssr55080 6 17666046 to 17666074 28 + TSS region transcription start site region 55080
Tssr55081 6 17666132 to 17666154 22 + TSS region transcription start site region 55081
Tssr55082 6 17666186 to 17666206 20 + TSS region transcription start site region 55082
Tssr55083 6 17666260 to 17666279 19 + TSS region transcription start site region 55083
Tssr55084 6 17666672 to 17666686 14 + TSS region transcription start site region 55084
St7 6 17692940 to 17943023 250083 + protein coding gene suppression of tumorigenicity 7
Gm27755 6 17693426 to 17693557 131 + unclassified non-coding RNA gene predicted gene, 27755
Tssr55085 6 17693607 to 17693618 11 + TSS region transcription start site region 55085
Cpgi17178 6 17693675 to 17694984 1309 CpG island CpG island 17178
Tssr55086 6 17693905 to 17693937 32 + TSS region transcription start site region 55086
Gm27762 6 17693937 to 17694045 108 + unclassified non-coding RNA gene predicted gene, 27762
Tssr55087 6 17693965 to 17693989 24 + TSS region transcription start site region 55087
Tssr55088 6 17694005 to 17694025 20 + TSS region transcription start site region 55088
Tssr55089 6 17694051 to 17694091 40 + TSS region transcription start site region 55089
Tssr55090 6 17694170 to 17694179 9 + TSS region transcription start site region 55090
Tssr59909 6 17694695 to 17694714 19 - TSS region transcription start site region 59909
Gm27960 6 17694902 to 17695085 183 + unclassified non-coding RNA gene predicted gene, 27960
Gm27365 6 17695354 to 17695530 176 + unclassified non-coding RNA gene predicted gene, 27365
Gm27542 6 17696894 to 17697149 255 + unclassified non-coding RNA gene predicted gene, 27542
Gm28008 6 17703231 to 17703416 185 + unclassified non-coding RNA gene predicted gene, 28008
Gm13898 6 17710598 to 17711207 609 - pseudogene predicted gene 13898
Cpgi17179 6 17710846 to 17711062 216 CpG island CpG island 17179
Gm13899 6 17711687 to 17712724 1037 - pseudogene predicted gene 13899
Gm43533 6 17717578 to 17720513 2935 + unclassified gene predicted gene 43533
Tssr55091 6 17725342 to 17725346 4 + TSS region transcription start site region 55091
Tssr55092 6 17731220 to 17731254 34 + TSS region transcription start site region 55092
Tssr55093 6 17743582 to 17743593 11 + TSS region transcription start site region 55093
Tssr55094 6 17743594 to 17743613 19 + TSS region transcription start site region 55094
Gm42852 6 17747522 to 17748900 1378 - unclassified gene predicted gene 42852
Tssr55095 6 17749003 to 17749022 19 + TSS region transcription start site region 55095
Tssr1786 6 17749088 to 17749103 15 + TSS region transcription start site region 1786
Tssr55096 6 17749140 to 17749151 11 + TSS region transcription start site region 55096
Tssr55097 6 17749172 to 17749265 93 + TSS region transcription start site region 55097
Tssr55098 6 17749568 to 17749572 4 + TSS region transcription start site region 55098
Tssr55099 6 17762881 to 17762885 4 + TSS region transcription start site region 55099
Tssr55100 6 17822963 to 17822988 25 + TSS region transcription start site region 55100
Gm26738 6 17834585 to 17835185 600 - antisense lncRNA gene predicted gene, 26738
Cpgi17180 6 17840402 to 17840995 593 CpG island CpG island 17180
Gm27444 6 17905707 to 17905843 136 + unclassified non-coding RNA gene predicted gene, 27444
Gm27402 6 17907172 to 17907291 119 + unclassified non-coding RNA gene predicted gene, 27402
Gm43844 6 17914996 to 17920600 5604 + unclassified gene predicted gene 43844
D6Rck2 6 17985976 to 17986162 186 DNA segment DNA segment, Chr 6, Rockefeller University 2
Wnt2 6 17988940 to 18030585 41645 - protein coding gene wingless-type MMTV integration site family, member 2
Mdq13 6 18014442 to 18014442 0 QTL mammary ductal QTL 13
Cpgi17181 6 18030112 to 18030816 704 CpG island CpG island 17181
Tssr59910 6 18030344 to 18030389 45 - TSS region transcription start site region 59910
Tssr59911 6 18030393 to 18030403 10 - TSS region transcription start site region 59911
Tssr59912 6 18030435 to 18030460 25 - TSS region transcription start site region 59912
Cpgi17182 6 18031509 to 18032107 598 CpG island CpG island 17182
Asz1 6 18050964 to 18109061 58097 - protein coding gene ankyrin repeat, SAM and basic leucine zipper domain containing 1
Cpgi17183 6 18108833 to 18109264 431 CpG island CpG island 17183
Tssr59913 6 18109038 to 18109062 24 - TSS region transcription start site region 59913
Tssr59914 6 18109063 to 18109084 21 - TSS region transcription start site region 59914
Tssr59915 6 18109113 to 18109118 5 - TSS region transcription start site region 59915
Tssr55101 6 18109159 to 18109179 20 + TSS region transcription start site region 55101
Gm43845 6 18110142 to 18111961 1819 - unclassified gene predicted gene 43845
Gm15593 6 18144734 to 18145741 1007 + pseudogene predicted gene 15593
Gm15596 6 18156340 to 18157120 780 - pseudogene predicted gene 15596
Tssr55102 6 18169791 to 18169812 21 + TSS region transcription start site region 55102
Tssr55103 6 18169814 to 18169833 19 + TSS region transcription start site region 55103
Tssr1787 6 18169838 to 18169844 6 + TSS region transcription start site region 1787
Cpgi17184 6 18170239 to 18170842 603 CpG island CpG island 17184
Tssr55104 6 18170560 to 18170620 60 + TSS region transcription start site region 55104
Cftr 6 18170687 to 18322768 152081 + protein coding gene cystic fibrosis transmembrane conductance regulator
Tssr55105 6 18170742 to 18170756 14 + TSS region transcription start site region 55105
Tssr55106 6 18170758 to 18170780 22 + TSS region transcription start site region 55106
Tssr55107 6 18170782 to 18170798 16 + TSS region transcription start site region 55107
Dbts1 6 18234148 to 73387692 55153544 QTL diabetes 1
D6Mit236 6 18234148 to 18234291 143 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 236
Gm15592 6 18270136 to 18289048 18912 - antisense lncRNA gene predicted gene 15592
Gm15595 6 18294265 to 18295213 948 + pseudogene predicted gene 15595
Tssr55108 6 18335749 to 18335759 10 + TSS region transcription start site region 55108
Cttnbp2 6 18366478 to 18514843 148365 - protein coding gene cortactin binding protein 2
Tssr55109 6 18369270 to 18369271 1 + TSS region transcription start site region 55109
Tssr59916 6 18388054 to 18388077 23 - TSS region transcription start site region 59916
Tssr59917 6 18388160 to 18388164 4 - TSS region transcription start site region 59917
Tssr59918 6 18407877 to 18407881 4 - TSS region transcription start site region 59918
Gm15594 6 18424684 to 18427885 3201 + antisense lncRNA gene predicted gene 15594
Gm43843 6 18429659 to 18431245 1586 - unclassified gene predicted gene 43843
Gm40356 6 18437119 to 18448240 11121 + lncRNA gene predicted gene, 40356
Tssr59919 6 18443853 to 18443856 3 - TSS region transcription start site region 59919
Gm26233 6 18449271 to 18449340 69 - miRNA gene predicted gene, 26233