Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:148728915-149279326

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi18185 6 148734117 to 148734308 191 CpG island CpG island 18185
Ipo8 6 148770683 to 148831467 60784 - protein coding gene importin 8
Tssr64159 6 148814926 to 148814931 5 - TSS region transcription start site region 64159
Cpgi18186 6 148830847 to 148831740 893 CpG island CpG island 18186
Tssr64160 6 148831395 to 148831407 12 - TSS region transcription start site region 64160
Tssr64161 6 148831448 to 148831494 46 - TSS region transcription start site region 64161
Tssr59636 6 148831526 to 148831537 11 + TSS region transcription start site region 59636
Tssr59637 6 148831544 to 148831558 14 + TSS region transcription start site region 59637
2610017A05Rik 6 148831620 to 148833114 1494 + lncRNA gene RIKEN cDNA 2610017A05 gene
Caprin2 6 148842492 to 148896237 53745 - protein coding gene caprin family member 2
Cpgi18187 6 148895656 to 148896584 928 CpG island CpG island 18187
Tssr64162 6 148896174 to 148896188 14 - TSS region transcription start site region 64162
Gm43908 6 148899167 to 148900638 1471 - unclassified gene predicted gene, 43908
Gm7618 6 148900968 to 148901138 170 - pseudogene predicted pseudogene 7618
Tssr64163 6 148901169 to 148901170 1 - TSS region transcription start site region 64163
Gm43913 6 148915215 to 148920535 5320 - lincRNA gene predicted gene, 43913
Sinhcaf 6 148921057 to 148946432 25375 - protein coding gene SIN3-HDAC complex associated factor
D6Ertd87e 6 148935354 to 148935591 237 DNA segment DNA segment, Chr 6, ERATO Doi 87, expressed
Cpgi18188 6 148944468 to 148946943 2475 CpG island CpG island 18188
Tssr64164 6 148944750 to 148944778 28 - TSS region transcription start site region 64164
3010003L21Rik 6 148945214 to 148947129 1915 + antisense lncRNA gene RIKEN cDNA 3010003L21 gene
Tssr64165 6 148945426 to 148945445 19 - TSS region transcription start site region 64165
Tssr64166 6 148946146 to 148946182 36 - TSS region transcription start site region 64166
Tssr64167 6 148946460 to 148946498 38 - TSS region transcription start site region 64167
Gm25539 6 148967316 to 148967437 121 + snoRNA gene predicted gene, 25539
Tssr59638 6 148983850 to 148983859 9 + TSS region transcription start site region 59638
Dennd5b 6 148988071 to 149101680 113609 - protein coding gene DENN/MADD domain containing 5B
Gm26540 6 148988729 to 148991431 2702 + lincRNA gene predicted gene, 26540
Tssr64168 6 148989333 to 148989338 5 - TSS region transcription start site region 64168
Tssr64169 6 148992415 to 148992427 12 - TSS region transcription start site region 64169
Tssr59639 6 148992681 to 148992692 11 + TSS region transcription start site region 59639
Tssr59640 6 148992715 to 148992721 6 + TSS region transcription start site region 59640
Gm15779 6 149003915 to 149004326 411 + pseudogene predicted gene 15779
6330582A15Rik 6 149014315 to 149015766 1451 unclassified gene RIKEN cDNA 6330582A15 gene
Gm15781 6 149040980 to 149041302 322 + pseudogene predicted gene 15781
Gm49058 6 149051125 to 149053848 2723 - unclassified gene predicted gene, 49058
Gm22578 6 149052517 to 149052623 106 - snRNA gene predicted gene, 22578
Gm15780 6 149072704 to 149073638 934 + pseudogene predicted gene 15780
Gm23462 6 149074003 to 149074106 103 - snRNA gene predicted gene, 23462
Tssr64170 6 149100375 to 149100379 4 - TSS region transcription start site region 64170
Cpgi18189 6 149100423 to 149102096 1673 CpG island CpG island 18189
Tssr64171 6 149101506 to 149101589 83 - TSS region transcription start site region 64171
Tssr64172 6 149101674 to 149101686 12 - TSS region transcription start site region 64172
Tssr59641 6 149129644 to 149129659 15 + TSS region transcription start site region 59641
Tssr59642 6 149129951 to 149129955 4 + TSS region transcription start site region 59642
Gm10203 6 149130170 to 149130710 540 + protein coding gene predicted gene 10203
Tssr64173 6 149130928 to 149130971 43 - TSS region transcription start site region 64173
Tssr59643 6 149139791 to 149139807 16 + TSS region transcription start site region 59643
Cpgi18190 6 149141334 to 149141711 377 CpG island CpG island 18190
Etfbkmt 6 149141478 to 149151171 9693 + protein coding gene electron transfer flavoprotein beta subunit lysine methyltransferase
Tssr59644 6 149141535 to 149141619 84 + TSS region transcription start site region 59644
Tssr59645 6 149141654 to 149141663 9 + TSS region transcription start site region 59645
Tssr59646 6 149146108 to 149146114 6 + TSS region transcription start site region 59646
Amn1 6 149157261 to 149188771 31510 - protein coding gene antagonist of mitotic exit network 1
Tssr59647 6 149167898 to 149167921 23 + TSS region transcription start site region 59647
Cpgi18191 6 149188287 to 149188959 672 CpG island CpG island 18191
Tssr2062 6 149188354 to 149188368 14 + TSS region transcription start site region 2062
Tssr64174 6 149188622 to 149188636 14 - TSS region transcription start site region 64174
Tssr64175 6 149188648 to 149188725 77 - TSS region transcription start site region 64175
Tssr59648 6 149189695 to 149189699 4 + TSS region transcription start site region 59648
Tssr59649 6 149193901 to 149193905 4 + TSS region transcription start site region 59649
1700003I16Rik 6 149199095 to 149215185 16090 - lincRNA gene RIKEN cDNA 1700003I16 gene
Tssr64176 6 149260914 to 149260919 5 - TSS region transcription start site region 64176