Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:148291998-149122269

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmtc1 6 148232430 to 148444389 211959 - protein coding gene transmembrane and tetratricopeptide repeat containing 1
Cpgi18183 6 148354185 to 148355594 1409 CpG island CpG island 18183
Tssr64155 6 148354588 to 148354601 13 - TSS region transcription start site region 64155
Tssr59631 6 148354648 to 148354662 14 + TSS region transcription start site region 59631
Rps4l 6 148354656 to 148355596 940 + pseudogene ribosomal protein S4-like
Tssr59632 6 148354683 to 148354694 11 + TSS region transcription start site region 59632
Tssr59633 6 148354777 to 148354802 25 + TSS region transcription start site region 59633
Tssr59634 6 148354857 to 148354867 10 + TSS region transcription start site region 59634
Tssr59635 6 148355107 to 148355128 21 + TSS region transcription start site region 59635
Gm44020 6 148358795 to 148362113 3318 + antisense lncRNA gene predicted gene, 44020
Gm44021 6 148361141 to 148364656 3515 - unclassified gene predicted gene, 44021
Gm44022 6 148385901 to 148391329 5428 - unclassified gene predicted gene, 44022
D6Mit340 6 148428364 to 148428468 104 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 340
Cpgi18184 6 148443061 to 148444878 1817 CpG island CpG island 18184
Tssr64156 6 148444291 to 148444303 12 - TSS region transcription start site region 64156
Tssr64157 6 148444316 to 148444329 13 - TSS region transcription start site region 64157
Tssr64158 6 148444336 to 148444358 22 - TSS region transcription start site region 64158
D6Mit372 6 148450482 to 148450593 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 372
D6Mit390 6 148457950 to 148458057 107 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 390
Gm36613 6 148601278 to 148604346 3068 - lncRNA gene predicted gene, 36613
Gm6313 6 148606786 to 148614309 7523 - lincRNA gene predicted gene 6313
Gm23456 6 148642524 to 148642660 136 - snoRNA gene predicted gene, 23456
4930528G23Rik 6 148659978 to 148678000 18022 - lincRNA gene RIKEN cDNA 4930528G23 gene
Gm15778 6 148699029 to 148699636 607 - pseudogene predicted gene 15778
Gm44115 6 148701998 to 148712269 10271 + lincRNA gene predicted gene, 44115
Cpgi18185 6 148734117 to 148734308 191 CpG island CpG island 18185
Ipo8 6 148770683 to 148831467 60784 - protein coding gene importin 8
Tssr64159 6 148814926 to 148814931 5 - TSS region transcription start site region 64159
Cpgi18186 6 148830847 to 148831740 893 CpG island CpG island 18186
Tssr64160 6 148831395 to 148831407 12 - TSS region transcription start site region 64160
Tssr64161 6 148831448 to 148831494 46 - TSS region transcription start site region 64161
Tssr59636 6 148831526 to 148831537 11 + TSS region transcription start site region 59636
Tssr59637 6 148831544 to 148831558 14 + TSS region transcription start site region 59637
2610017A05Rik 6 148831620 to 148833114 1494 + lncRNA gene RIKEN cDNA 2610017A05 gene
Caprin2 6 148842492 to 148896237 53745 - protein coding gene caprin family member 2
Cpgi18187 6 148895656 to 148896584 928 CpG island CpG island 18187
Tssr64162 6 148896174 to 148896188 14 - TSS region transcription start site region 64162
Gm43908 6 148899167 to 148900638 1471 - unclassified gene predicted gene, 43908
Gm7618 6 148900968 to 148901138 170 - pseudogene predicted pseudogene 7618
Tssr64163 6 148901169 to 148901170 1 - TSS region transcription start site region 64163
Gm43913 6 148915215 to 148920535 5320 - lincRNA gene predicted gene, 43913
Sinhcaf 6 148921057 to 148946432 25375 - protein coding gene SIN3-HDAC complex associated factor
D6Ertd87e 6 148935354 to 148935591 237 DNA segment DNA segment, Chr 6, ERATO Doi 87, expressed
Cpgi18188 6 148944468 to 148946943 2475 CpG island CpG island 18188
Tssr64164 6 148944750 to 148944778 28 - TSS region transcription start site region 64164
3010003L21Rik 6 148945214 to 148947129 1915 + antisense lncRNA gene RIKEN cDNA 3010003L21 gene
Tssr64165 6 148945426 to 148945445 19 - TSS region transcription start site region 64165
Tssr64166 6 148946146 to 148946182 36 - TSS region transcription start site region 64166
Tssr64167 6 148946460 to 148946498 38 - TSS region transcription start site region 64167
Gm25539 6 148967316 to 148967437 121 + snoRNA gene predicted gene, 25539
Tssr59638 6 148983850 to 148983859 9 + TSS region transcription start site region 59638
Dennd5b 6 148988071 to 149101680 113609 - protein coding gene DENN/MADD domain containing 5B
Gm26540 6 148988729 to 148991431 2702 + lincRNA gene predicted gene, 26540
Tssr64168 6 148989333 to 148989338 5 - TSS region transcription start site region 64168
Tssr64169 6 148992415 to 148992427 12 - TSS region transcription start site region 64169
Tssr59639 6 148992681 to 148992692 11 + TSS region transcription start site region 59639
Tssr59640 6 148992715 to 148992721 6 + TSS region transcription start site region 59640
Gm15779 6 149003915 to 149004326 411 + pseudogene predicted gene 15779
6330582A15Rik 6 149014315 to 149015766 1451 unclassified gene RIKEN cDNA 6330582A15 gene
Gm15781 6 149040980 to 149041302 322 + pseudogene predicted gene 15781
Gm49058 6 149051125 to 149053848 2723 - unclassified gene predicted gene, 49058
Gm22578 6 149052517 to 149052623 106 - snRNA gene predicted gene, 22578
Gm15780 6 149072704 to 149073638 934 + pseudogene predicted gene 15780
Gm23462 6 149074003 to 149074106 103 - snRNA gene predicted gene, 23462
Tssr64170 6 149100375 to 149100379 4 - TSS region transcription start site region 64170
Cpgi18189 6 149100423 to 149102096 1673 CpG island CpG island 18189
Tssr64171 6 149101506 to 149101589 83 - TSS region transcription start site region 64171
Tssr64172 6 149101674 to 149101686 12 - TSS region transcription start site region 64172