Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:147533915-150474326

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccdc91 6 147475871 to 147632613 156742 + protein coding gene coiled-coil domain containing 91
Tssr64148 6 147675705 to 147675710 5 - TSS region transcription start site region 64148
Tssr64149 6 147675736 to 147675763 27 - TSS region transcription start site region 64149
1700049E15Rik 6 147690241 to 147702374 12133 + lincRNA gene RIKEN cDNA 1700049E15 gene
Gm15762 6 147709982 to 147719451 9469 - lincRNA gene predicted gene 15762
Far2os2 6 148006580 to 148047339 40759 - antisense lncRNA gene fatty acyl CoA reductase 2, opposite strand 2
Cpgi18181 6 148047071 to 148047629 558 CpG island CpG island 18181
Far2 6 148047259 to 148182758 135499 + protein coding gene fatty acyl CoA reductase 2
Tssr59623 6 148047362 to 148047378 16 + TSS region transcription start site region 59623
Tssr59624 6 148047380 to 148047407 27 + TSS region transcription start site region 59624
Tssr59625 6 148047409 to 148047424 15 + TSS region transcription start site region 59625
Tssr64150 6 148048103 to 148048116 13 - TSS region transcription start site region 64150
Far2os1 6 148060855 to 148067873 7018 - antisense lncRNA gene fatty acyl CoA reductase 2, opposite strand 1
Tssr59626 6 148109425 to 148109433 8 + TSS region transcription start site region 59626
Tssr59627 6 148109484 to 148109496 12 + TSS region transcription start site region 59627
Tssr59628 6 148109503 to 148109518 15 + TSS region transcription start site region 59628
Ergic2 6 148179318 to 148212374 33056 - protein coding gene ERGIC and golgi 2
Cpgi18182 6 148211408 to 148212579 1171 CpG island CpG island 18182
Tssr64151 6 148211996 to 148212059 63 - TSS region transcription start site region 64151
Tssr59629 6 148212215 to 148212237 22 + TSS region transcription start site region 59629
4732416N19Rik 6 148212253 to 148215731 3478 + lncRNA gene RIKEN cDNA 4732416N19 gene
Tssr59630 6 148212272 to 148212315 43 + TSS region transcription start site region 59630
Tssr64152 6 148212337 to 148212343 6 - TSS region transcription start site region 64152
Tssr64153 6 148212359 to 148212367 8 - TSS region transcription start site region 64153
Tssr64154 6 148212378 to 148212391 13 - TSS region transcription start site region 64154
Gm17216 6 148213367 to 148214573 1206 - lincRNA gene predicted gene 17216
Tmtc1 6 148232430 to 148444389 211959 - protein coding gene transmembrane and tetratricopeptide repeat containing 1
Gm15763 6 148261150 to 148261552 402 + pseudogene predicted gene 15763
Cpgi18183 6 148354185 to 148355594 1409 CpG island CpG island 18183
Tssr64155 6 148354588 to 148354601 13 - TSS region transcription start site region 64155
Tssr59631 6 148354648 to 148354662 14 + TSS region transcription start site region 59631
Rps4l 6 148354656 to 148355596 940 + pseudogene ribosomal protein S4-like
Tssr59632 6 148354683 to 148354694 11 + TSS region transcription start site region 59632
Tssr59633 6 148354777 to 148354802 25 + TSS region transcription start site region 59633
Tssr59634 6 148354857 to 148354867 10 + TSS region transcription start site region 59634
Tssr59635 6 148355107 to 148355128 21 + TSS region transcription start site region 59635
Gm44020 6 148358795 to 148362113 3318 + antisense lncRNA gene predicted gene, 44020
Gm44021 6 148361141 to 148364656 3515 - unclassified gene predicted gene, 44021
Gm44022 6 148385901 to 148391329 5428 - unclassified gene predicted gene, 44022
D6Mit340 6 148428364 to 148428468 104 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 340
Cpgi18184 6 148443061 to 148444878 1817 CpG island CpG island 18184
Tssr64156 6 148444291 to 148444303 12 - TSS region transcription start site region 64156
Tssr64157 6 148444316 to 148444329 13 - TSS region transcription start site region 64157
Tssr64158 6 148444336 to 148444358 22 - TSS region transcription start site region 64158
D6Mit372 6 148450482 to 148450593 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 372
D6Mit390 6 148457950 to 148458057 107 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 390
Gm36613 6 148601278 to 148604346 3068 - lncRNA gene predicted gene, 36613
Gm6313 6 148606786 to 148614309 7523 - lincRNA gene predicted gene 6313
Gm23456 6 148642524 to 148642660 136 - snoRNA gene predicted gene, 23456
4930528G23Rik 6 148659978 to 148678000 18022 - lincRNA gene RIKEN cDNA 4930528G23 gene
Gm15778 6 148699029 to 148699636 607 - pseudogene predicted gene 15778
Gm44115 6 148701998 to 148712269 10271 + lincRNA gene predicted gene, 44115
Cpgi18185 6 148734117 to 148734308 191 CpG island CpG island 18185
Ipo8 6 148770683 to 148831467 60784 - protein coding gene importin 8
Tssr64159 6 148814926 to 148814931 5 - TSS region transcription start site region 64159
Cpgi18186 6 148830847 to 148831740 893 CpG island CpG island 18186
Tssr64160 6 148831395 to 148831407 12 - TSS region transcription start site region 64160
Tssr64161 6 148831448 to 148831494 46 - TSS region transcription start site region 64161
Tssr59636 6 148831526 to 148831537 11 + TSS region transcription start site region 59636
Tssr59637 6 148831544 to 148831558 14 + TSS region transcription start site region 59637
2610017A05Rik 6 148831620 to 148833114 1494 + lncRNA gene RIKEN cDNA 2610017A05 gene
Caprin2 6 148842492 to 148896237 53745 - protein coding gene caprin family member 2
Cpgi18187 6 148895656 to 148896584 928 CpG island CpG island 18187
Tssr64162 6 148896174 to 148896188 14 - TSS region transcription start site region 64162
Gm43908 6 148899167 to 148900638 1471 - unclassified gene predicted gene, 43908
Gm7618 6 148900968 to 148901138 170 - pseudogene predicted pseudogene 7618
Tssr64163 6 148901169 to 148901170 1 - TSS region transcription start site region 64163
Gm43913 6 148915215 to 148920535 5320 - lincRNA gene predicted gene, 43913
Sinhcaf 6 148921057 to 148946432 25375 - protein coding gene SIN3-HDAC complex associated factor
D6Ertd87e 6 148935354 to 148935591 237 DNA segment DNA segment, Chr 6, ERATO Doi 87, expressed
Cpgi18188 6 148944468 to 148946943 2475 CpG island CpG island 18188
Tssr64164 6 148944750 to 148944778 28 - TSS region transcription start site region 64164
3010003L21Rik 6 148945214 to 148947129 1915 + antisense lncRNA gene RIKEN cDNA 3010003L21 gene
Tssr64165 6 148945426 to 148945445 19 - TSS region transcription start site region 64165
Tssr64166 6 148946146 to 148946182 36 - TSS region transcription start site region 64166
Tssr64167 6 148946460 to 148946498 38 - TSS region transcription start site region 64167
Gm25539 6 148967316 to 148967437 121 + snoRNA gene predicted gene, 25539
Tssr59638 6 148983850 to 148983859 9 + TSS region transcription start site region 59638
Dennd5b 6 148988071 to 149101680 113609 - protein coding gene DENN/MADD domain containing 5B
Gm26540 6 148988729 to 148991431 2702 + lincRNA gene predicted gene, 26540
Tssr64168 6 148989333 to 148989338 5 - TSS region transcription start site region 64168
Tssr64169 6 148992415 to 148992427 12 - TSS region transcription start site region 64169
Tssr59639 6 148992681 to 148992692 11 + TSS region transcription start site region 59639
Tssr59640 6 148992715 to 148992721 6 + TSS region transcription start site region 59640
Gm15779 6 149003915 to 149004326 411 + pseudogene predicted gene 15779
6330582A15Rik 6 149014315 to 149015766 1451 unclassified gene RIKEN cDNA 6330582A15 gene
Gm15781 6 149040980 to 149041302 322 + pseudogene predicted gene 15781
Gm49058 6 149051125 to 149053848 2723 - unclassified gene predicted gene, 49058
Gm22578 6 149052517 to 149052623 106 - snRNA gene predicted gene, 22578
Gm15780 6 149072704 to 149073638 934 + pseudogene predicted gene 15780
Gm23462 6 149074003 to 149074106 103 - snRNA gene predicted gene, 23462
Tssr64170 6 149100375 to 149100379 4 - TSS region transcription start site region 64170
Cpgi18189 6 149100423 to 149102096 1673 CpG island CpG island 18189
Tssr64171 6 149101506 to 149101589 83 - TSS region transcription start site region 64171
Tssr64172 6 149101674 to 149101686 12 - TSS region transcription start site region 64172
Tssr59641 6 149129644 to 149129659 15 + TSS region transcription start site region 59641
Tssr59642 6 149129951 to 149129955 4 + TSS region transcription start site region 59642
Gm10203 6 149130170 to 149130710 540 + protein coding gene predicted gene 10203
Tssr64173 6 149130928 to 149130971 43 - TSS region transcription start site region 64173
Tssr59643 6 149139791 to 149139807 16 + TSS region transcription start site region 59643
Cpgi18190 6 149141334 to 149141711 377 CpG island CpG island 18190
Etfbkmt 6 149141478 to 149151171 9693 + protein coding gene electron transfer flavoprotein beta subunit lysine methyltransferase
Tssr59644 6 149141535 to 149141619 84 + TSS region transcription start site region 59644
Tssr59645 6 149141654 to 149141663 9 + TSS region transcription start site region 59645
Tssr59646 6 149146108 to 149146114 6 + TSS region transcription start site region 59646
Amn1 6 149157261 to 149188771 31510 - protein coding gene antagonist of mitotic exit network 1
Tssr59647 6 149167898 to 149167921 23 + TSS region transcription start site region 59647
Cpgi18191 6 149188287 to 149188959 672 CpG island CpG island 18191
Tssr2062 6 149188354 to 149188368 14 + TSS region transcription start site region 2062
Tssr64174 6 149188622 to 149188636 14 - TSS region transcription start site region 64174
Tssr64175 6 149188648 to 149188725 77 - TSS region transcription start site region 64175
Tssr59648 6 149189695 to 149189699 4 + TSS region transcription start site region 59648
Tssr59649 6 149193901 to 149193905 4 + TSS region transcription start site region 59649
1700003I16Rik 6 149199095 to 149215185 16090 - lincRNA gene RIKEN cDNA 1700003I16 gene
Tssr64176 6 149260914 to 149260919 5 - TSS region transcription start site region 64176
Gm10388 6 149283838 to 149286773 2935 - unclassified gene predicted gene 10388
Tssr64177 6 149305465 to 149305473 8 - TSS region transcription start site region 64177
Tssr64178 6 149307782 to 149307797 15 - TSS region transcription start site region 64178
Cpgi18192 6 149309301 to 149309873 572 CpG island CpG island 18192
Tssr59650 6 149309313 to 149309318 5 + TSS region transcription start site region 59650
Tssr59651 6 149309391 to 149309438 47 + TSS region transcription start site region 59651
Resf1 6 149309414 to 149335663 26249 + protein coding gene retroelement silencing factor 1
Tssr59652 6 149309444 to 149309482 38 + TSS region transcription start site region 59652
Tssr59653 6 149309545 to 149309558 13 + TSS region transcription start site region 59653
Tssr64179 6 149309633 to 149309650 17 - TSS region transcription start site region 64179
Tssr64180 6 149309656 to 149309685 29 - TSS region transcription start site region 64180
Tssr59654 6 149309733 to 149309755 22 + TSS region transcription start site region 59654
Tssr59655 6 149309782 to 149309824 42 + TSS region transcription start site region 59655
Tssr59656 6 149310328 to 149310335 7 + TSS region transcription start site region 59656
Tssr59657 6 149325392 to 149325446 54 + TSS region transcription start site region 59657
Tssr59658 6 149325473 to 149325502 29 + TSS region transcription start site region 59658
Tssr59659 6 149326034 to 149326040 6 + TSS region transcription start site region 59659
Tssr59660 6 149328529 to 149328563 34 + TSS region transcription start site region 59660
Tssr59661 6 149328846 to 149328860 14 + TSS region transcription start site region 59661
Tssr59662 6 149329389 to 149329405 16 + TSS region transcription start site region 59662
Tssr64181 6 149332237 to 149332238 1 - TSS region transcription start site region 64181
Tssr59663 6 149334226 to 149334228 2 + TSS region transcription start site region 59663
Gm38930 6 149349255 to 149352735 3480 - lncRNA gene predicted gene, 38930
Gm15782 6 149353382 to 149353826 444 - pseudogene predicted gene 15782
Cpgi18193 6 149353630 to 149353852 222 CpG island CpG island 18193
Tssr59664 6 149361495 to 149361515 20 + TSS region transcription start site region 59664
Cpgi18194 6 149361647 to 149361845 198 CpG island CpG island 18194
Gm15784 6 149361686 to 149363147 1461 + pseudogene predicted gene 15784
Cpgi18195 6 149362663 to 149362887 224 CpG island CpG island 18195
Tssr59665 6 149362755 to 149362780 25 + TSS region transcription start site region 59665
Tssr2063 6 149401667 to 149401685 18 + TSS region transcription start site region 2063
Gm15786 6 149401793 to 149402242 449 + pseudogene predicted gene 15786
Gm15783 6 149406159 to 149406679 520 + pseudogene predicted gene 15783
Cpgi18196 6 149408763 to 149409471 708 CpG island CpG island 18196
Tssr59666 6 149408879 to 149408890 11 + TSS region transcription start site region 59666
Bicd1 6 149408886 to 149563329 154443 + protein coding gene BICD cargo adaptor 1
Tssr59667 6 149408973 to 149409038 65 + TSS region transcription start site region 59667
Tssr59668 6 149409039 to 149409094 55 + TSS region transcription start site region 59668
Gm15785 6 149433780 to 149434473 693 - pseudogene predicted gene 15785
Gm2458 6 149520419 to 149566961 46542 protein coding gene predicted gene 2458
Tssr59669 6 149531926 to 149531930 4 + TSS region transcription start site region 59669
Gm38931 6 149539853 to 149551207 11354 - lncRNA gene predicted gene, 38931
Tssr59670 6 149566067 to 149566116 49 + TSS region transcription start site region 59670
Gm21814 6 149566090 to 149583656 17566 + lincRNA gene predicted gene, 21814
Tssr59671 6 149566133 to 149566150 17 + TSS region transcription start site region 59671
Gm44043 6 149570409 to 149573661 3252 + unclassified gene predicted gene, 44043
Gm24307 6 149576461 to 149576561 100 + miRNA gene predicted gene, 24307