Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:147277337-149147343

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116 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr64145 6 147389786 to 147389817 31 - TSS region transcription start site region 64145
Gm6288 6 147438169 to 147475791 37622 - antisense lncRNA gene predicted gene 6288
D6Mit304 6 147439405 to 147439523 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 304
Cpgi18180 6 147475746 to 147476808 1062 CpG island CpG island 18180
Tssr59619 6 147475865 to 147475922 57 + TSS region transcription start site region 59619
Ccdc91 6 147475871 to 147632613 156742 + protein coding gene coiled-coil domain containing 91
4933406L23Rik 6 147529801 to 147531309 1508 - unclassified gene RIKEN cDNA 4933406L23 gene
Tssr64146 6 147531275 to 147531285 10 - TSS region transcription start site region 64146
Tssr64147 6 147531290 to 147531299 9 - TSS region transcription start site region 64147
Tssr59620 6 147531367 to 147531383 16 + TSS region transcription start site region 59620
Tssr59621 6 147531392 to 147531438 46 + TSS region transcription start site region 59621
Tssr59622 6 147531440 to 147531450 10 + TSS region transcription start site region 59622
Tssr64148 6 147675705 to 147675710 5 - TSS region transcription start site region 64148
Tssr64149 6 147675736 to 147675763 27 - TSS region transcription start site region 64149
1700049E15Rik 6 147690241 to 147702374 12133 + lincRNA gene RIKEN cDNA 1700049E15 gene
Gm15762 6 147709982 to 147719451 9469 - lincRNA gene predicted gene 15762
Far2os2 6 148006580 to 148047339 40759 - antisense lncRNA gene fatty acyl CoA reductase 2, opposite strand 2
Cpgi18181 6 148047071 to 148047629 558 CpG island CpG island 18181
Far2 6 148047259 to 148182758 135499 + protein coding gene fatty acyl CoA reductase 2
Tssr59623 6 148047362 to 148047378 16 + TSS region transcription start site region 59623
Tssr59624 6 148047380 to 148047407 27 + TSS region transcription start site region 59624
Tssr59625 6 148047409 to 148047424 15 + TSS region transcription start site region 59625
Tssr64150 6 148048103 to 148048116 13 - TSS region transcription start site region 64150
Far2os1 6 148060855 to 148067873 7018 - antisense lncRNA gene fatty acyl CoA reductase 2, opposite strand 1
Tssr59626 6 148109425 to 148109433 8 + TSS region transcription start site region 59626
Tssr59627 6 148109484 to 148109496 12 + TSS region transcription start site region 59627
Tssr59628 6 148109503 to 148109518 15 + TSS region transcription start site region 59628
Ergic2 6 148179318 to 148212374 33056 - protein coding gene ERGIC and golgi 2
Cpgi18182 6 148211408 to 148212579 1171 CpG island CpG island 18182
Tssr64151 6 148211996 to 148212059 63 - TSS region transcription start site region 64151
Tssr59629 6 148212215 to 148212237 22 + TSS region transcription start site region 59629
4732416N19Rik 6 148212253 to 148215731 3478 + lncRNA gene RIKEN cDNA 4732416N19 gene
Tssr59630 6 148212272 to 148212315 43 + TSS region transcription start site region 59630
Tssr64152 6 148212337 to 148212343 6 - TSS region transcription start site region 64152
Tssr64153 6 148212359 to 148212367 8 - TSS region transcription start site region 64153
Tssr64154 6 148212378 to 148212391 13 - TSS region transcription start site region 64154
Gm17216 6 148213367 to 148214573 1206 - lincRNA gene predicted gene 17216
Tmtc1 6 148232430 to 148444389 211959 - protein coding gene transmembrane and tetratricopeptide repeat containing 1
Gm15763 6 148261150 to 148261552 402 + pseudogene predicted gene 15763
Cpgi18183 6 148354185 to 148355594 1409 CpG island CpG island 18183
Tssr64155 6 148354588 to 148354601 13 - TSS region transcription start site region 64155
Tssr59631 6 148354648 to 148354662 14 + TSS region transcription start site region 59631
Rps4l 6 148354656 to 148355596 940 + pseudogene ribosomal protein S4-like
Tssr59632 6 148354683 to 148354694 11 + TSS region transcription start site region 59632
Tssr59633 6 148354777 to 148354802 25 + TSS region transcription start site region 59633
Tssr59634 6 148354857 to 148354867 10 + TSS region transcription start site region 59634
Tssr59635 6 148355107 to 148355128 21 + TSS region transcription start site region 59635
Gm44020 6 148358795 to 148362113 3318 + antisense lncRNA gene predicted gene, 44020
Gm44021 6 148361141 to 148364656 3515 - unclassified gene predicted gene, 44021
Gm44022 6 148385901 to 148391329 5428 - unclassified gene predicted gene, 44022
D6Mit340 6 148428364 to 148428468 104 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 340
Cpgi18184 6 148443061 to 148444878 1817 CpG island CpG island 18184
Tssr64156 6 148444291 to 148444303 12 - TSS region transcription start site region 64156
Tssr64157 6 148444316 to 148444329 13 - TSS region transcription start site region 64157
Tssr64158 6 148444336 to 148444358 22 - TSS region transcription start site region 64158
D6Mit372 6 148450482 to 148450593 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 372
D6Mit390 6 148457950 to 148458057 107 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 390
Gm36613 6 148601278 to 148604346 3068 - lncRNA gene predicted gene, 36613
Gm6313 6 148606786 to 148614309 7523 - lincRNA gene predicted gene 6313
Gm23456 6 148642524 to 148642660 136 - snoRNA gene predicted gene, 23456
4930528G23Rik 6 148659978 to 148678000 18022 - lincRNA gene RIKEN cDNA 4930528G23 gene
Gm15778 6 148699029 to 148699636 607 - pseudogene predicted gene 15778
Gm44115 6 148701998 to 148712269 10271 + lincRNA gene predicted gene, 44115
Cpgi18185 6 148734117 to 148734308 191 CpG island CpG island 18185
Ipo8 6 148770683 to 148831467 60784 - protein coding gene importin 8
Tssr64159 6 148814926 to 148814931 5 - TSS region transcription start site region 64159
Cpgi18186 6 148830847 to 148831740 893 CpG island CpG island 18186
Tssr64160 6 148831395 to 148831407 12 - TSS region transcription start site region 64160
Tssr64161 6 148831448 to 148831494 46 - TSS region transcription start site region 64161
Tssr59636 6 148831526 to 148831537 11 + TSS region transcription start site region 59636
Tssr59637 6 148831544 to 148831558 14 + TSS region transcription start site region 59637
2610017A05Rik 6 148831620 to 148833114 1494 + lncRNA gene RIKEN cDNA 2610017A05 gene
Caprin2 6 148842492 to 148896237 53745 - protein coding gene caprin family member 2
Cpgi18187 6 148895656 to 148896584 928 CpG island CpG island 18187
Tssr64162 6 148896174 to 148896188 14 - TSS region transcription start site region 64162
Gm43908 6 148899167 to 148900638 1471 - unclassified gene predicted gene, 43908
Gm7618 6 148900968 to 148901138 170 - pseudogene predicted pseudogene 7618
Tssr64163 6 148901169 to 148901170 1 - TSS region transcription start site region 64163
Gm43913 6 148915215 to 148920535 5320 - lincRNA gene predicted gene, 43913
Sinhcaf 6 148921057 to 148946432 25375 - protein coding gene SIN3-HDAC complex associated factor
D6Ertd87e 6 148935354 to 148935591 237 DNA segment DNA segment, Chr 6, ERATO Doi 87, expressed
Cpgi18188 6 148944468 to 148946943 2475 CpG island CpG island 18188
Tssr64164 6 148944750 to 148944778 28 - TSS region transcription start site region 64164
3010003L21Rik 6 148945214 to 148947129 1915 + antisense lncRNA gene RIKEN cDNA 3010003L21 gene
Tssr64165 6 148945426 to 148945445 19 - TSS region transcription start site region 64165
Tssr64166 6 148946146 to 148946182 36 - TSS region transcription start site region 64166
Tssr64167 6 148946460 to 148946498 38 - TSS region transcription start site region 64167
Gm25539 6 148967316 to 148967437 121 + snoRNA gene predicted gene, 25539
Tssr59638 6 148983850 to 148983859 9 + TSS region transcription start site region 59638
Dennd5b 6 148988071 to 149101680 113609 - protein coding gene DENN/MADD domain containing 5B
Gm26540 6 148988729 to 148991431 2702 + lincRNA gene predicted gene, 26540
Tssr64168 6 148989333 to 148989338 5 - TSS region transcription start site region 64168
Tssr64169 6 148992415 to 148992427 12 - TSS region transcription start site region 64169
Tssr59639 6 148992681 to 148992692 11 + TSS region transcription start site region 59639
Tssr59640 6 148992715 to 148992721 6 + TSS region transcription start site region 59640
Gm15779 6 149003915 to 149004326 411 + pseudogene predicted gene 15779
6330582A15Rik 6 149014315 to 149015766 1451 unclassified gene RIKEN cDNA 6330582A15 gene
Gm15781 6 149040980 to 149041302 322 + pseudogene predicted gene 15781
Gm49058 6 149051125 to 149053848 2723 - unclassified gene predicted gene, 49058
Gm22578 6 149052517 to 149052623 106 - snRNA gene predicted gene, 22578
Gm15780 6 149072704 to 149073638 934 + pseudogene predicted gene 15780
Gm23462 6 149074003 to 149074106 103 - snRNA gene predicted gene, 23462
Tssr64170 6 149100375 to 149100379 4 - TSS region transcription start site region 64170
Cpgi18189 6 149100423 to 149102096 1673 CpG island CpG island 18189
Tssr64171 6 149101506 to 149101589 83 - TSS region transcription start site region 64171
Tssr64172 6 149101674 to 149101686 12 - TSS region transcription start site region 64172
Tssr59641 6 149129644 to 149129659 15 + TSS region transcription start site region 59641
Tssr59642 6 149129951 to 149129955 4 + TSS region transcription start site region 59642
Gm10203 6 149130170 to 149130710 540 + protein coding gene predicted gene 10203
Tssr64173 6 149130928 to 149130971 43 - TSS region transcription start site region 64173
Tssr59643 6 149139791 to 149139807 16 + TSS region transcription start site region 59643
Cpgi18190 6 149141334 to 149141711 377 CpG island CpG island 18190
Etfbkmt 6 149141478 to 149151171 9693 + protein coding gene electron transfer flavoprotein beta subunit lysine methyltransferase
Tssr59644 6 149141535 to 149141619 84 + TSS region transcription start site region 59644
Tssr59645 6 149141654 to 149141663 9 + TSS region transcription start site region 59645
Tssr59646 6 149146108 to 149146114 6 + TSS region transcription start site region 59646