Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:146488001-147568459

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143 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clas1 6 112269957 to 147052561 34782604 QTL carcinogen-induced lung adenoma susceptibility 1
Itpr2 6 146108299 to 146502223 393924 - protein coding gene inositol 1,4,5-triphosphate receptor 2
Idd6.3 6 146428986 to 147052561 623575 QTL insulin dependent diabetes susceptibility 6.3
Cpgi18166 6 146501417 to 146502747 1330 CpG island CpG island 18166
Tssr59572 6 146501644 to 146501656 12 + TSS region transcription start site region 59572
Tssr59573 6 146501705 to 146501723 18 + TSS region transcription start site region 59573
Tssr64116 6 146501994 to 146502033 39 - TSS region transcription start site region 64116
Tssr64117 6 146502039 to 146502060 21 - TSS region transcription start site region 64117
Tssr64118 6 146502111 to 146502133 22 - TSS region transcription start site region 64118
Tssr64119 6 146502141 to 146502230 89 - TSS region transcription start site region 64119
Tssr59574 6 146502310 to 146502332 22 + TSS region transcription start site region 59574
Tssr64120 6 146515904 to 146515911 7 - TSS region transcription start site region 64120
Ints13 6 146549632 to 146577835 28203 - protein coding gene integrator complex subunit 13
Cpgi18167 6 146577106 to 146578434 1328 CpG island CpG island 18167
Tssr64121 6 146577399 to 146577427 28 - TSS region transcription start site region 64121
Tssr64122 6 146577430 to 146577472 42 - TSS region transcription start site region 64122
Tssr59575 6 146577512 to 146577531 19 + TSS region transcription start site region 59575
Tssr59576 6 146577534 to 146577550 16 + TSS region transcription start site region 59576
Tssr64123 6 146577588 to 146577592 4 - TSS region transcription start site region 64123
Tssr59577 6 146577606 to 146577623 17 + TSS region transcription start site region 59577
Fgfr1op2 6 146577635 to 146599198 21563 + protein coding gene FGFR1 oncogene partner 2
Tssr64124 6 146577756 to 146577799 43 - TSS region transcription start site region 64124
Tssr64125 6 146577808 to 146577824 16 - TSS region transcription start site region 64125
Tssr64126 6 146577825 to 146577839 14 - TSS region transcription start site region 64126
Tssr59578 6 146577897 to 146577948 51 + TSS region transcription start site region 59578
Tssr59579 6 146577952 to 146577970 18 + TSS region transcription start site region 59579
Tssr59580 6 146585681 to 146585720 39 + TSS region transcription start site region 59580
Tssr59581 6 146589133 to 146589146 13 + TSS region transcription start site region 59581
Tm7sf3 6 146602276 to 146634592 32316 - protein coding gene transmembrane 7 superfamily member 3
Insq8 6 146633481 to 146633626 145 QTL insulin QTL 8
D6Mit201 6 146633481 to 146633626 145 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 201
D6Mit201.2 6 146633605 to 146633715 110 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 201.2
Egq11 6 146633626 to 96655951 -49977675 QTL early growth QTL 11
W6q5 6 146633626 to 96655951 -49977675 QTL weight 6 weeks QTL 5
Tesq2 6 146633626 to 96655951 -49977675 QTL testis weight QTL 2
Cpgi18168 6 146633774 to 146634729 955 CpG island CpG island 18168
Tssr59582 6 146633834 to 146633878 44 + TSS region transcription start site region 59582
Tssr64127 6 146634453 to 146634493 40 - TSS region transcription start site region 64127
Tssr64128 6 146634507 to 146634518 11 - TSS region transcription start site region 64128
Tssr64129 6 146634527 to 146634580 53 - TSS region transcription start site region 64129
Tssr64130 6 146634588 to 146634611 23 - TSS region transcription start site region 64130
Tssr59583 6 146640290 to 146640293 3 + TSS region transcription start site region 59583
Cpgi18169 6 146642247 to 146643205 958 CpG island CpG island 18169
Tssr59584 6 146642572 to 146642596 24 + TSS region transcription start site region 59584
Med21 6 146642579 to 146650600 8021 + protein coding gene mediator complex subunit 21
Tssr59585 6 146642605 to 146642616 11 + TSS region transcription start site region 59585
Gm6654 6 146647241 to 146647588 347 - pseudogene predicted pseudogene 6654
Tssr64131 6 146647611 to 146647613 2 - TSS region transcription start site region 64131
Tssr59586 6 146657210 to 146657218 8 + TSS region transcription start site region 59586
4930479D17Rik 6 146657218 to 146665403 8185 + lincRNA gene RIKEN cDNA 4930479D17 gene
Tssr59587 6 146657222 to 146657230 8 + TSS region transcription start site region 59587
Cpgi18170 6 146724614 to 146725760 1146 CpG island CpG island 18170
Tssr59588 6 146724957 to 146724998 41 + TSS region transcription start site region 59588
Stk38l 6 146724995 to 146778812 53817 + protein coding gene serine/threonine kinase 38 like
Tssr59589 6 146725005 to 146725027 22 + TSS region transcription start site region 59589
Tssr59590 6 146752340 to 146752359 19 + TSS region transcription start site region 59590
Tssr59591 6 146757031 to 146757046 15 + TSS region transcription start site region 59591
Gm44270 6 146762581 to 146763814 1233 + unclassified gene predicted gene, 44270
Tssr59592 6 146782445 to 146782446 1 + TSS region transcription start site region 59592
Gm6266 6 146782469 to 146783274 805 + pseudogene predicted gene 6266
Cpgi18171 6 146795766 to 146796411 645 CpG island CpG island 18171
Tssr59593 6 146796041 to 146796072 31 + TSS region transcription start site region 59593
Arntl2 6 146796055 to 146833529 37474 + protein coding gene aryl hydrocarbon receptor nuclear translocator-like 2
Tssr59594 6 146796073 to 146796091 18 + TSS region transcription start site region 59594
4930447C11Rik 6 146846276 to 146847203 927 - unclassified gene RIKEN cDNA 4930447C11 gene
Tssr59595 6 146850100 to 146850109 9 + TSS region transcription start site region 59595
Smco2 6 146850104 to 146871406 21302 + protein coding gene single-pass membrane protein with coiled-coil domains 2
Tssr59596 6 146850120 to 146850159 39 + TSS region transcription start site region 59596
Tssr2061 6 146850169 to 146850175 6 + TSS region transcription start site region 2061
Tssr59597 6 146861798 to 146861805 7 + TSS region transcription start site region 59597
Tssr59598 6 146861956 to 146861963 7 + TSS region transcription start site region 59598
Tssr59599 6 146861992 to 146861999 7 + TSS region transcription start site region 59599
Cpgi18172 6 146870986 to 146871255 269 CpG island CpG island 18172
Cpgi18173 6 146888026 to 146889148 1122 CpG island CpG island 18173
Tssr59600 6 146888481 to 146888588 107 + TSS region transcription start site region 59600
Ppfibp1 6 146888487 to 147032025 143538 + protein coding gene PTPRF interacting protein, binding protein 1 (liprin beta 1)
Tssr59601 6 146888593 to 146888605 12 + TSS region transcription start site region 59601
Tssr59602 6 146888632 to 146888654 22 + TSS region transcription start site region 59602
Tssr59603 6 146932899 to 146932909 10 + TSS region transcription start site region 59603
Tssr59604 6 146933387 to 146933419 32 + TSS region transcription start site region 59604
Tssr59605 6 146933448 to 146933454 6 + TSS region transcription start site region 59605
1700034J05Rik 6 146950329 to 146954422 4093 - protein coding gene RIKEN cDNA 1700034J05 gene
Tssr64132 6 146954383 to 146954396 13 - TSS region transcription start site region 64132
Tssr64133 6 146954399 to 146954431 32 - TSS region transcription start site region 64133
Tssr64134 6 146954435 to 146954440 5 - TSS region transcription start site region 64134
Gm44085 6 146992367 to 146994024 1657 - antisense lncRNA gene predicted gene, 44085
Gm35876 6 147028001 to 147028459 458 + pseudogene predicted gene, 35876
Tssr59606 6 147032528 to 147032547 19 + TSS region transcription start site region 59606
Rep15 6 147032537 to 147033518 981 + protein coding gene RAB15 effector protein
Tssr59607 6 147032586 to 147032597 11 + TSS region transcription start site region 59607
Tssr59608 6 147032609 to 147032625 16 + TSS region transcription start site region 59608
Cpgi18174 6 147042614 to 147043286 672 CpG island CpG island 18174
Tssr64135 6 147042683 to 147042720 37 - TSS region transcription start site region 64135
Mrps35 6 147042740 to 147070906 28166 + protein coding gene mitochondrial ribosomal protein S35
Tssr59609 6 147042745 to 147042750 5 + TSS region transcription start site region 59609
Tssr59610 6 147042755 to 147042797 42 + TSS region transcription start site region 59610
D6Mit373 6 147052456 to 147052561 105 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 373
Eamcd2 6 147052456 to 147052561 105 QTL experimental autoimmune myocarditis 2
T2dm4sa 6 147052561 to 83713869 -63338692 QTL type 2 diabetes mellitus 4 in SMXA RI mice
Tssr59611 6 147073498 to 147073525 27 + TSS region transcription start site region 59611
Mansc4 6 147075062 to 147087032 11970 - protein coding gene MANSC domain containing 4
Cpgi18175 6 147086783 to 147086972 189 CpG island CpG island 18175
Tssr64136 6 147087023 to 147087037 14 - TSS region transcription start site region 64136
A330079N23Rik 6 147089309 to 147091849 2540 unclassified gene RIKEN cDNA A330079N23 gene
Cpgi18176 6 147090821 to 147092493 1672 CpG island CpG island 18176
Klhl42 6 147091379 to 147112778 21399 + protein coding gene kelch-like 42
Tssr59612 6 147091483 to 147091528 45 + TSS region transcription start site region 59612
Tssr59613 6 147096550 to 147096555 5 + TSS region transcription start site region 59613
Tssr59614 6 147099552 to 147099578 26 + TSS region transcription start site region 59614
Tssr59615 6 147111951 to 147111959 8 + TSS region transcription start site region 59615
Gm7571 6 147173481 to 147175116 1635 + pseudogene predicted gene 7571
E330012B07Rik 6 147180244 to 147208285 28041 + lincRNA gene RIKEN cDNA E330012B07 gene
Cpgi18177 6 147232821 to 147232982 161 CpG island CpG island 18177
Gm15767 6 147242527 to 147243801 1274 - lincRNA gene predicted gene 15767
Tssr64137 6 147243784 to 147243793 9 - TSS region transcription start site region 64137
Tssr64138 6 147243794 to 147243806 12 - TSS region transcription start site region 64138
Tssr64139 6 147243814 to 147243836 22 - TSS region transcription start site region 64139
Pthlh 6 147252109 to 147264013 11904 - protein coding gene parathyroid hormone-like peptide
Tssr59616 6 147257081 to 147257088 7 + TSS region transcription start site region 59616
Tssr59617 6 147257155 to 147257161 6 + TSS region transcription start site region 59617
Cpgi18178 6 147263177 to 147264552 1375 CpG island CpG island 18178
Tssr64140 6 147263858 to 147263874 16 - TSS region transcription start site region 64140
Tssr64141 6 147263933 to 147263940 7 - TSS region transcription start site region 64141
Tssr64142 6 147263963 to 147263977 14 - TSS region transcription start site region 64142
Tssr64143 6 147263982 to 147264028 46 - TSS region transcription start site region 64143
Tssr59618 6 147264098 to 147264103 5 + TSS region transcription start site region 59618
Tssr64144 6 147264124 to 147264152 28 - TSS region transcription start site region 64144
Ltq3 6 147264666 to 147264871 205 QTL lung tumor QTL 3
D6Mit26 6 147264666 to 147264871 205 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 26
Cpgi18179 6 147268499 to 147268706 207 CpG island CpG island 18179
Gm15766 6 147271837 to 147272649 812 + pseudogene predicted gene 15766
Tssr64145 6 147389786 to 147389817 31 - TSS region transcription start site region 64145
Gm6288 6 147438169 to 147475791 37622 - antisense lncRNA gene predicted gene 6288
D6Mit304 6 147439405 to 147439523 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 304
Cpgi18180 6 147475746 to 147476808 1062 CpG island CpG island 18180
Tssr59619 6 147475865 to 147475922 57 + TSS region transcription start site region 59619
Ccdc91 6 147475871 to 147632613 156742 + protein coding gene coiled-coil domain containing 91
4933406L23Rik 6 147529801 to 147531309 1508 - unclassified gene RIKEN cDNA 4933406L23 gene
Tssr64146 6 147531275 to 147531285 10 - TSS region transcription start site region 64146
Tssr64147 6 147531290 to 147531299 9 - TSS region transcription start site region 64147
Tssr59620 6 147531367 to 147531383 16 + TSS region transcription start site region 59620
Tssr59621 6 147531392 to 147531438 46 + TSS region transcription start site region 59621
Tssr59622 6 147531440 to 147531450 10 + TSS region transcription start site region 59622