Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:145727534-147427550

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231 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clas1 6 112269957 to 147052561 34782604 QTL carcinogen-induced lung adenoma susceptibility 1
Radpf3 6 115242853 to 146429238 31186385 QTL radiation pulmonary fibrosis 3
Mop1 6 132601042 to 146429238 13828196 QTL morphine preference 1
Idd6.2 6 143610925 to 146313558 2702633 QTL insulin dependent diabetes susceptibility 6.2
Gm15704 6 145738693 to 145746273 7580 - lincRNA gene predicted gene 15704
Cpgi18161 6 145746101 to 145747529 1428 CpG island CpG island 18161
Tssr64072 6 145746270 to 145746274 4 - TSS region transcription start site region 64072
Tssr59553 6 145746585 to 145746606 21 + TSS region transcription start site region 59553
Tssr59554 6 145746739 to 145746767 28 + TSS region transcription start site region 59554
Rassf8 6 145746748 to 145821079 74331 + protein coding gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 8
Tssr59555 6 145746779 to 145746808 29 + TSS region transcription start site region 59555
Tssr59556 6 145746839 to 145746869 30 + TSS region transcription start site region 59556
Tssr59557 6 145807196 to 145807232 36 + TSS region transcription start site region 59557
Tssr59558 6 145808189 to 145808224 35 + TSS region transcription start site region 59558
Tssr59559 6 145815390 to 145815423 33 + TSS region transcription start site region 59559
Tssr59560 6 145816501 to 145816521 20 + TSS region transcription start site region 59560
Gm38927 6 145837844 to 145842396 4552 - lncRNA gene predicted gene, 38927
Bhlhe41 6 145858243 to 145865420 7177 - protein coding gene basic helix-loop-helix family, member e41
Tssr64073 6 145862015 to 145862019 4 - TSS region transcription start site region 64073
Tssr64074 6 145862196 to 145862224 28 - TSS region transcription start site region 64074
Tssr64075 6 145862419 to 145862434 15 - TSS region transcription start site region 64075
Cpgi18162 6 145862491 to 145864182 1691 CpG island CpG island 18162
Tssr64076 6 145862634 to 145862680 46 - TSS region transcription start site region 64076
Tssr59561 6 145862750 to 145862764 14 + TSS region transcription start site region 59561
Tssr64077 6 145862785 to 145862827 42 - TSS region transcription start site region 64077
Tssr64078 6 145863138 to 145863184 46 - TSS region transcription start site region 64078
Tssr64079 6 145863193 to 145863251 58 - TSS region transcription start site region 64079
Gm43909 6 145863297 to 145865172 1875 + unclassified gene predicted gene, 43909
Tssr64080 6 145863599 to 145863611 12 - TSS region transcription start site region 64080
Tssr64081 6 145863620 to 145863642 22 - TSS region transcription start site region 64081
Tssr64082 6 145863644 to 145863665 21 - TSS region transcription start site region 64082
Tssr64083 6 145863671 to 145863782 111 - TSS region transcription start site region 64083
Tssr64084 6 145863817 to 145863835 18 - TSS region transcription start site region 64084
Tssr59562 6 145863844 to 145863886 42 + TSS region transcription start site region 59562
Tssr64085 6 145864688 to 145864722 34 - TSS region transcription start site region 64085
Tssr64086 6 145864887 to 145864891 4 - TSS region transcription start site region 64086
Cpgi18163 6 145865136 to 145866894 1758 CpG island CpG island 18163
Tssr64087 6 145865335 to 145865359 24 - TSS region transcription start site region 64087
Tssr64088 6 145865371 to 145865383 12 - TSS region transcription start site region 64088
Tssr64089 6 145865385 to 145865412 27 - TSS region transcription start site region 64089
Tssr64090 6 145865432 to 145865435 3 - TSS region transcription start site region 64090
Tssr64091 6 145865444 to 145865474 30 - TSS region transcription start site region 64091
Tssr64092 6 145865483 to 145865536 53 - TSS region transcription start site region 64092
Tssr64093 6 145865548 to 145865557 9 - TSS region transcription start site region 64093
Tssr64094 6 145865564 to 145865572 8 - TSS region transcription start site region 64094
Tssr59563 6 145865675 to 145865693 18 + TSS region transcription start site region 59563
Gm32675 6 145903331 to 145927024 23693 + lncRNA gene predicted gene, 32675
Sspn 6 145931873 to 145965225 33352 + protein coding gene sarcospan
Cpgi18164 6 145934032 to 145934441 409 CpG island CpG island 18164
Tssr59564 6 145934113 to 145934136 23 + TSS region transcription start site region 59564
Tssr59565 6 145934137 to 145934161 24 + TSS region transcription start site region 59565
D6Mit200 6 145935340 to 145935444 104 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 200
Bbaa5 6 145935444 to 98506837 -47428607 QTL B.burgdorferi-associated arthritis 5
Gm43931 6 145947076 to 145949945 2869 + unclassified gene predicted gene, 43931
Sspnos 6 145951656 to 145957534 5878 - antisense lncRNA gene sarcospan, opposite strand
Tssr59566 6 145953577 to 145953584 7 + TSS region transcription start site region 59566
Gm32838 6 145968897 to 146080267 111370 + lncRNA gene predicted gene, 32838
Gm38928 6 145973931 to 145976700 2769 - lncRNA gene predicted gene, 38928
Gm32914 6 145999536 to 146001763 2227 - lincRNA gene predicted gene, 32914
Gm35544 6 146071762 to 146073564 1802 - lncRNA gene predicted gene, 35544
Tssr64095 6 146081035 to 146081051 16 - TSS region transcription start site region 64095
Itpr2 6 146108299 to 146502223 393924 - protein coding gene inositol 1,4,5-triphosphate receptor 2
Tssr64096 6 146113162 to 146113209 47 - TSS region transcription start site region 64096
Tssr64097 6 146113221 to 146113241 20 - TSS region transcription start site region 64097
Tssr59567 6 146113333 to 146113380 47 + TSS region transcription start site region 59567
Tssr59568 6 146115791 to 146115802 11 + TSS region transcription start site region 59568
Tssr64098 6 146116089 to 146116092 3 - TSS region transcription start site region 64098
Gm35768 6 146144102 to 146187477 43375 + lncRNA gene predicted gene, 35768
Tssr59569 6 146170999 to 146171039 40 + TSS region transcription start site region 59569
Gm35707 6 146197403 to 146205763 8360 + lncRNA gene predicted gene, 35707
Tssr64099 6 146212793 to 146212817 24 - TSS region transcription start site region 64099
Tssr64100 6 146212831 to 146212842 11 - TSS region transcription start site region 64100
Tssr64101 6 146212913 to 146212922 9 - TSS region transcription start site region 64101
Tssr64102 6 146212942 to 146212969 27 - TSS region transcription start site region 64102
Tssr64103 6 146213212 to 146213218 6 - TSS region transcription start site region 64103
Gm35596 6 146218896 to 146243458 24562 + lncRNA gene predicted gene, 35596
Tssr59570 6 146219806 to 146219818 12 + TSS region transcription start site region 59570
Tssr59571 6 146219840 to 146219851 11 + TSS region transcription start site region 59571
Tssr64104 6 146254547 to 146254552 5 - TSS region transcription start site region 64104
Tssr64105 6 146257642 to 146257647 5 - TSS region transcription start site region 64105
Gm44086 6 146268632 to 146270980 2348 - unclassified gene predicted gene, 44086
Tssr64106 6 146289411 to 146289424 13 - TSS region transcription start site region 64106
Tssr64107 6 146290062 to 146290065 3 - TSS region transcription start site region 64107
D6Mit295 6 146313436 to 146313544 108 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 295
D6Mit294 6 146313436 to 146313558 122 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 294
Gm44087 6 146376417 to 146378186 1769 + unclassified gene predicted gene, 44087
Tssr64108 6 146401338 to 146401360 22 - TSS region transcription start site region 64108
Tssr64109 6 146401391 to 146401422 31 - TSS region transcription start site region 64109
Tssr64110 6 146425016 to 146425024 8 - TSS region transcription start site region 64110
Bpq5 6 146428986 to 146429238 252 QTL blood pressure QTL 5
D6Mit15 6 146428986 to 146429238 252 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 15
Trmq1 6 146428986 to 146429238 252 QTL T cell ratio modifier QTL 1
Skmw14 6 146428986 to 146429238 252 QTL skeletal muscle weight 14
Idd6.3 6 146428986 to 147052561 623575 QTL insulin dependent diabetes susceptibility 6.3
Bmiq4 6 146429238 to 92607306 -53821932 QTL body mass index QTL 4
Tssr64111 6 146443027 to 146443031 4 - TSS region transcription start site region 64111
Tssr64112 6 146445601 to 146445614 13 - TSS region transcription start site region 64112
Cpgi18165 6 146452514 to 146452789 275 CpG island CpG island 18165
Tssr64113 6 146460140 to 146460144 4 - TSS region transcription start site region 64113
Gm15720 6 146463326 to 146463607 281 - pseudogene predicted gene 15720
Tssr64114 6 146470717 to 146470721 4 - TSS region transcription start site region 64114
Tssr64115 6 146476001 to 146476044 43 - TSS region transcription start site region 64115
Cpgi18166 6 146501417 to 146502747 1330 CpG island CpG island 18166
Tssr59572 6 146501644 to 146501656 12 + TSS region transcription start site region 59572
Tssr59573 6 146501705 to 146501723 18 + TSS region transcription start site region 59573
Tssr64116 6 146501994 to 146502033 39 - TSS region transcription start site region 64116
Tssr64117 6 146502039 to 146502060 21 - TSS region transcription start site region 64117
Tssr64118 6 146502111 to 146502133 22 - TSS region transcription start site region 64118
Tssr64119 6 146502141 to 146502230 89 - TSS region transcription start site region 64119
Tssr59574 6 146502310 to 146502332 22 + TSS region transcription start site region 59574
Tssr64120 6 146515904 to 146515911 7 - TSS region transcription start site region 64120
Ints13 6 146549632 to 146577835 28203 - protein coding gene integrator complex subunit 13
Cpgi18167 6 146577106 to 146578434 1328 CpG island CpG island 18167
Tssr64121 6 146577399 to 146577427 28 - TSS region transcription start site region 64121
Tssr64122 6 146577430 to 146577472 42 - TSS region transcription start site region 64122
Tssr59575 6 146577512 to 146577531 19 + TSS region transcription start site region 59575
Tssr59576 6 146577534 to 146577550 16 + TSS region transcription start site region 59576
Tssr64123 6 146577588 to 146577592 4 - TSS region transcription start site region 64123
Tssr59577 6 146577606 to 146577623 17 + TSS region transcription start site region 59577
Fgfr1op2 6 146577635 to 146599198 21563 + protein coding gene FGFR1 oncogene partner 2
Tssr64124 6 146577756 to 146577799 43 - TSS region transcription start site region 64124
Tssr64125 6 146577808 to 146577824 16 - TSS region transcription start site region 64125
Tssr64126 6 146577825 to 146577839 14 - TSS region transcription start site region 64126
Tssr59578 6 146577897 to 146577948 51 + TSS region transcription start site region 59578
Tssr59579 6 146577952 to 146577970 18 + TSS region transcription start site region 59579
Tssr59580 6 146585681 to 146585720 39 + TSS region transcription start site region 59580
Tssr59581 6 146589133 to 146589146 13 + TSS region transcription start site region 59581
Tm7sf3 6 146602276 to 146634592 32316 - protein coding gene transmembrane 7 superfamily member 3
D6Mit201 6 146633481 to 146633626 145 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 201
Insq8 6 146633481 to 146633626 145 QTL insulin QTL 8
D6Mit201.2 6 146633605 to 146633715 110 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 201.2
Egq11 6 146633626 to 96655951 -49977675 QTL early growth QTL 11
Tesq2 6 146633626 to 96655951 -49977675 QTL testis weight QTL 2
W6q5 6 146633626 to 96655951 -49977675 QTL weight 6 weeks QTL 5
Cpgi18168 6 146633774 to 146634729 955 CpG island CpG island 18168
Tssr59582 6 146633834 to 146633878 44 + TSS region transcription start site region 59582
Tssr64127 6 146634453 to 146634493 40 - TSS region transcription start site region 64127
Tssr64128 6 146634507 to 146634518 11 - TSS region transcription start site region 64128
Tssr64129 6 146634527 to 146634580 53 - TSS region transcription start site region 64129
Tssr64130 6 146634588 to 146634611 23 - TSS region transcription start site region 64130
Tssr59583 6 146640290 to 146640293 3 + TSS region transcription start site region 59583
Cpgi18169 6 146642247 to 146643205 958 CpG island CpG island 18169
Tssr59584 6 146642572 to 146642596 24 + TSS region transcription start site region 59584
Med21 6 146642579 to 146650600 8021 + protein coding gene mediator complex subunit 21
Tssr59585 6 146642605 to 146642616 11 + TSS region transcription start site region 59585
Gm6654 6 146647241 to 146647588 347 - pseudogene predicted pseudogene 6654
Tssr64131 6 146647611 to 146647613 2 - TSS region transcription start site region 64131
Tssr59586 6 146657210 to 146657218 8 + TSS region transcription start site region 59586
4930479D17Rik 6 146657218 to 146665403 8185 + lincRNA gene RIKEN cDNA 4930479D17 gene
Tssr59587 6 146657222 to 146657230 8 + TSS region transcription start site region 59587
Cpgi18170 6 146724614 to 146725760 1146 CpG island CpG island 18170
Tssr59588 6 146724957 to 146724998 41 + TSS region transcription start site region 59588
Stk38l 6 146724995 to 146778812 53817 + protein coding gene serine/threonine kinase 38 like
Tssr59589 6 146725005 to 146725027 22 + TSS region transcription start site region 59589
Tssr59590 6 146752340 to 146752359 19 + TSS region transcription start site region 59590
Tssr59591 6 146757031 to 146757046 15 + TSS region transcription start site region 59591
Gm44270 6 146762581 to 146763814 1233 + unclassified gene predicted gene, 44270
Tssr59592 6 146782445 to 146782446 1 + TSS region transcription start site region 59592
Gm6266 6 146782469 to 146783274 805 + pseudogene predicted gene 6266
Cpgi18171 6 146795766 to 146796411 645 CpG island CpG island 18171
Tssr59593 6 146796041 to 146796072 31 + TSS region transcription start site region 59593
Arntl2 6 146796055 to 146833529 37474 + protein coding gene aryl hydrocarbon receptor nuclear translocator-like 2
Tssr59594 6 146796073 to 146796091 18 + TSS region transcription start site region 59594
4930447C11Rik 6 146846276 to 146847203 927 - unclassified gene RIKEN cDNA 4930447C11 gene
Tssr59595 6 146850100 to 146850109 9 + TSS region transcription start site region 59595
Smco2 6 146850104 to 146871406 21302 + protein coding gene single-pass membrane protein with coiled-coil domains 2
Tssr59596 6 146850120 to 146850159 39 + TSS region transcription start site region 59596
Tssr2061 6 146850169 to 146850175 6 + TSS region transcription start site region 2061
Tssr59597 6 146861798 to 146861805 7 + TSS region transcription start site region 59597
Tssr59598 6 146861956 to 146861963 7 + TSS region transcription start site region 59598
Tssr59599 6 146861992 to 146861999 7 + TSS region transcription start site region 59599
Cpgi18172 6 146870986 to 146871255 269 CpG island CpG island 18172
Cpgi18173 6 146888026 to 146889148 1122 CpG island CpG island 18173
Tssr59600 6 146888481 to 146888588 107 + TSS region transcription start site region 59600
Ppfibp1 6 146888487 to 147032025 143538 + protein coding gene PTPRF interacting protein, binding protein 1 (liprin beta 1)
Tssr59601 6 146888593 to 146888605 12 + TSS region transcription start site region 59601
Tssr59602 6 146888632 to 146888654 22 + TSS region transcription start site region 59602
Tssr59603 6 146932899 to 146932909 10 + TSS region transcription start site region 59603
Tssr59604 6 146933387 to 146933419 32 + TSS region transcription start site region 59604
Tssr59605 6 146933448 to 146933454 6 + TSS region transcription start site region 59605
1700034J05Rik 6 146950329 to 146954422 4093 - protein coding gene RIKEN cDNA 1700034J05 gene
Tssr64132 6 146954383 to 146954396 13 - TSS region transcription start site region 64132
Tssr64133 6 146954399 to 146954431 32 - TSS region transcription start site region 64133
Tssr64134 6 146954435 to 146954440 5 - TSS region transcription start site region 64134
Gm44085 6 146992367 to 146994024 1657 - antisense lncRNA gene predicted gene, 44085
Gm35876 6 147028001 to 147028459 458 + pseudogene predicted gene, 35876
Tssr59606 6 147032528 to 147032547 19 + TSS region transcription start site region 59606
Rep15 6 147032537 to 147033518 981 + protein coding gene RAB15 effector protein
Tssr59607 6 147032586 to 147032597 11 + TSS region transcription start site region 59607
Tssr59608 6 147032609 to 147032625 16 + TSS region transcription start site region 59608
Cpgi18174 6 147042614 to 147043286 672 CpG island CpG island 18174
Tssr64135 6 147042683 to 147042720 37 - TSS region transcription start site region 64135
Mrps35 6 147042740 to 147070906 28166 + protein coding gene mitochondrial ribosomal protein S35
Tssr59609 6 147042745 to 147042750 5 + TSS region transcription start site region 59609
Tssr59610 6 147042755 to 147042797 42 + TSS region transcription start site region 59610
Eamcd2 6 147052456 to 147052561 105 QTL experimental autoimmune myocarditis 2
D6Mit373 6 147052456 to 147052561 105 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 373
T2dm4sa 6 147052561 to 83713869 -63338692 QTL type 2 diabetes mellitus 4 in SMXA RI mice
Tssr59611 6 147073498 to 147073525 27 + TSS region transcription start site region 59611
Mansc4 6 147075062 to 147087032 11970 - protein coding gene MANSC domain containing 4