Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:145210987-146020994

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130 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mvwf2 6 114368732 to 145656013 31287281 QTL modifier of von Willebrand factor 2
Pas17 6 124357314 to 145656013 21298699 QTL pulmonary adenoma susceptibility 17
Shm5 6 132289569 to 145656013 13366444 QTL sperm head morphology 5
Casc1 6 145174872 to 145211017 36145 - protein coding gene cancer susceptibility candidate 1
Cpgi18155 6 145210679 to 145211549 870 CpG island CpG island 18155
Etfrf1 6 145211134 to 145216542 5408 + protein coding gene electron transfer flavoprotein regulatory factor 1
Tssr59540 6 145211141 to 145211222 81 + TSS region transcription start site region 59540
Tssr59541 6 145211229 to 145211240 11 + TSS region transcription start site region 59541
Tssr59542 6 145212525 to 145212529 4 + TSS region transcription start site region 59542
Kras 6 145216699 to 145250239 33540 - protein coding gene Kirsten rat sarcoma viral oncogene homolog
Pas18 6 145216699 to 145250239 33540 QTL pulmonary adenoma susceptibility 18
Ncilt 6 145216699 to 145250239 33540 QTL nuclear cytoplasmic invaginations in lung tumors
Tssr2056 6 145229435 to 145229442 7 - TSS region transcription start site region 2056
Pas15 6 145235142 to 145235338 196 QTL pulmonary adenoma susceptibility 15
D6Mit57 6 145235142 to 145235338 196 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 57
Gm44164 6 145238667 to 145241227 2560 - unclassified gene predicted gene, 44164
Tssr59543 6 145240465 to 145240471 6 + TSS region transcription start site region 59543
Cpgi18156 6 145249239 to 145251126 1887 CpG island CpG island 18156
Tssr64054 6 145250177 to 145250259 82 - TSS region transcription start site region 64054
Tssr64055 6 145250386 to 145250397 11 - TSS region transcription start site region 64055
Gm15706 6 145250552 to 145251856 1304 + lincRNA gene predicted gene 15706
Rps25-ps1 6 145266400 to 145266777 377 + pseudogene ribosomal protein S25, pseudogene 1
Tssr64056 6 145267860 to 145267864 4 - TSS region transcription start site region 64056
Cpgi18157 6 145276237 to 145276561 324 CpG island CpG island 18157
Tssr2057 6 145276305 to 145276320 15 - TSS region transcription start site region 2057
Gm22793 6 145287928 to 145288257 329 - unclassified non-coding RNA gene predicted gene, 22793
Tssr64057 6 145288243 to 145288260 17 - TSS region transcription start site region 64057
2010013B24Rik 6 145303152 to 145308951 5799 + lincRNA gene RIKEN cDNA 2010013B24 gene
Cpgi18158 6 145303667 to 145303941 274 CpG island CpG island 18158
Gm44428 6 145304310 to 145305183 873 + unclassified gene predicted gene, 44428
Tssr64058 6 145306651 to 145306653 2 - TSS region transcription start site region 64058
Tssr59544 6 145307049 to 145307050 1 + TSS region transcription start site region 59544
Tssr2058 6 145307330 to 145307334 4 - TSS region transcription start site region 2058
Gm15707 6 145315613 to 145316608 995 - pseudogene predicted gene 15707
Cpgi18159 6 145340082 to 145341621 1539 CpG island CpG island 18159
Tssr64059 6 145340091 to 145340108 17 - TSS region transcription start site region 64059
Tssr59545 6 145340282 to 145340296 14 + TSS region transcription start site region 59545
Tssr64060 6 145340673 to 145340687 14 - TSS region transcription start site region 64060
Tssr64061 6 145340700 to 145340719 19 - TSS region transcription start site region 64061
Tssr64062 6 145340778 to 145340799 21 - TSS region transcription start site region 64062
Tssr59546 6 145341014 to 145341035 21 + TSS region transcription start site region 59546
Tssr2059 6 145341464 to 145341470 6 + TSS region transcription start site region 2059
Tssr59547 6 145341481 to 145341494 13 + TSS region transcription start site region 59547
Tssr64063 6 145341754 to 145341779 25 - TSS region transcription start site region 64063
Tssr64064 6 145341874 to 145341909 35 - TSS region transcription start site region 64064
Gm38926 6 145347865 to 145348405 540 - lncRNA gene predicted gene, 38926
Gm23498 6 145366858 to 145366944 86 + snoRNA gene predicted gene, 23498
Tssr59548 6 145387593 to 145387601 8 + TSS region transcription start site region 59548
Tssr59549 6 145387603 to 145387621 18 + TSS region transcription start site region 59549
1700073E17Rik 6 145387625 to 145392224 4599 + pseudogene RIKEN cDNA 1700073E17 gene
Lmntd1 6 145387885 to 145450773 62888 - protein coding gene lamin tail domain containing 1
Tssr64065 6 145433993 to 145434013 20 - TSS region transcription start site region 64065
Tssr64066 6 145434046 to 145434054 8 - TSS region transcription start site region 64066
Tssr64067 6 145434059 to 145434071 12 - TSS region transcription start site region 64067
Tssr64068 6 145434079 to 145434090 11 - TSS region transcription start site region 64068
Tssr64069 6 145434932 to 145434953 21 - TSS region transcription start site region 64069
Gm15499 6 145441756 to 145444028 2272 + antisense lncRNA gene predicted gene 15499
Tssr64070 6 145450753 to 145450767 14 - TSS region transcription start site region 64070
Gm38475 6 145453345 to 145614319 160974 - lncRNA gene predicted gene, 38475
Gm25373 6 145464189 to 145464303 114 + snoRNA gene predicted gene, 25373
D6Ertd469e 6 145540410 to 145540609 199 DNA segment DNA segment, Chr 6, ERATO Doi 469, expressed
Tssr64071 6 145614277 to 145614291 14 - TSS region transcription start site region 64071
Cpgi18160 6 145615724 to 145616196 472 CpG island CpG island 18160
Tssr59550 6 145615757 to 145615772 15 + TSS region transcription start site region 59550
Tuba3b 6 145615963 to 145621477 5514 + protein coding gene tubulin, alpha 3B
Tssr2060 6 145615987 to 145615994 7 + TSS region transcription start site region 2060
Tssr59551 6 145616009 to 145616026 17 + TSS region transcription start site region 59551
Tssr59552 6 145616036 to 145616041 5 + TSS region transcription start site region 59552
Hdlq12 6 145655856 to 145656013 157 QTL HDL QTL 12
Lith25 6 145655856 to 145656013 157 QTL lithogenic gene 25
Sle23 6 145655856 to 145656013 157 QTL systematic lupus erythematosus susceptibility 23
D6Mit14 6 145655856 to 145656013 157 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 14
Sndy1 6 145656013 to 50864934 -94791079 heritable phenotypic marker syndactyly 1
D6Mit14.1 6 145656046 to 145656206 160 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 14.1
D6Mit303 6 145682808 to 145682949 141 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 303
Gm15704 6 145738693 to 145746273 7580 - lincRNA gene predicted gene 15704
Cpgi18161 6 145746101 to 145747529 1428 CpG island CpG island 18161
Tssr64072 6 145746270 to 145746274 4 - TSS region transcription start site region 64072
Tssr59553 6 145746585 to 145746606 21 + TSS region transcription start site region 59553
Tssr59554 6 145746739 to 145746767 28 + TSS region transcription start site region 59554
Rassf8 6 145746748 to 145821079 74331 + protein coding gene Ras association (RalGDS/AF-6) domain family (N-terminal) member 8
Tssr59555 6 145746779 to 145746808 29 + TSS region transcription start site region 59555
Tssr59556 6 145746839 to 145746869 30 + TSS region transcription start site region 59556
Tssr59557 6 145807196 to 145807232 36 + TSS region transcription start site region 59557
Tssr59558 6 145808189 to 145808224 35 + TSS region transcription start site region 59558
Tssr59559 6 145815390 to 145815423 33 + TSS region transcription start site region 59559
Tssr59560 6 145816501 to 145816521 20 + TSS region transcription start site region 59560
Gm38927 6 145837844 to 145842396 4552 - lncRNA gene predicted gene, 38927
Bhlhe41 6 145858243 to 145865420 7177 - protein coding gene basic helix-loop-helix family, member e41
Tssr64073 6 145862015 to 145862019 4 - TSS region transcription start site region 64073
Tssr64074 6 145862196 to 145862224 28 - TSS region transcription start site region 64074
Tssr64075 6 145862419 to 145862434 15 - TSS region transcription start site region 64075
Cpgi18162 6 145862491 to 145864182 1691 CpG island CpG island 18162
Tssr64076 6 145862634 to 145862680 46 - TSS region transcription start site region 64076
Tssr59561 6 145862750 to 145862764 14 + TSS region transcription start site region 59561
Tssr64077 6 145862785 to 145862827 42 - TSS region transcription start site region 64077
Tssr64078 6 145863138 to 145863184 46 - TSS region transcription start site region 64078
Tssr64079 6 145863193 to 145863251 58 - TSS region transcription start site region 64079
Gm43909 6 145863297 to 145865172 1875 + unclassified gene predicted gene, 43909
Tssr64080 6 145863599 to 145863611 12 - TSS region transcription start site region 64080
Tssr64081 6 145863620 to 145863642 22 - TSS region transcription start site region 64081
Tssr64082 6 145863644 to 145863665 21 - TSS region transcription start site region 64082
Tssr64083 6 145863671 to 145863782 111 - TSS region transcription start site region 64083
Tssr64084 6 145863817 to 145863835 18 - TSS region transcription start site region 64084
Tssr59562 6 145863844 to 145863886 42 + TSS region transcription start site region 59562
Tssr64085 6 145864688 to 145864722 34 - TSS region transcription start site region 64085
Tssr64086 6 145864887 to 145864891 4 - TSS region transcription start site region 64086
Cpgi18163 6 145865136 to 145866894 1758 CpG island CpG island 18163
Tssr64087 6 145865335 to 145865359 24 - TSS region transcription start site region 64087
Tssr64088 6 145865371 to 145865383 12 - TSS region transcription start site region 64088
Tssr64089 6 145865385 to 145865412 27 - TSS region transcription start site region 64089
Tssr64090 6 145865432 to 145865435 3 - TSS region transcription start site region 64090
Tssr64091 6 145865444 to 145865474 30 - TSS region transcription start site region 64091
Tssr64092 6 145865483 to 145865536 53 - TSS region transcription start site region 64092
Tssr64093 6 145865548 to 145865557 9 - TSS region transcription start site region 64093
Tssr64094 6 145865564 to 145865572 8 - TSS region transcription start site region 64094
Tssr59563 6 145865675 to 145865693 18 + TSS region transcription start site region 59563
Gm32675 6 145903331 to 145927024 23693 + lncRNA gene predicted gene, 32675
Sspn 6 145931873 to 145965225 33352 + protein coding gene sarcospan
Cpgi18164 6 145934032 to 145934441 409 CpG island CpG island 18164
Tssr59564 6 145934113 to 145934136 23 + TSS region transcription start site region 59564
Tssr59565 6 145934137 to 145934161 24 + TSS region transcription start site region 59565
D6Mit200 6 145935340 to 145935444 104 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 200
Bbaa5 6 145935444 to 98506837 -47428607 QTL B.burgdorferi-associated arthritis 5
Gm43931 6 145947076 to 145949945 2869 + unclassified gene predicted gene, 43931
Sspnos 6 145951656 to 145957534 5878 - antisense lncRNA gene sarcospan, opposite strand
Tssr59566 6 145953577 to 145953584 7 + TSS region transcription start site region 59566
Gm32838 6 145968897 to 146080267 111370 + lncRNA gene predicted gene, 32838
Gm38928 6 145973931 to 145976700 2769 - lncRNA gene predicted gene, 38928
Gm32914 6 145999536 to 146001763 2227 - lincRNA gene predicted gene, 32914