Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:144603074-145473188

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139 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sox5 6 143828425 to 144781977 953552 - protein coding gene SRY (sex determining region Y)-box 5
Tssr64021 6 144630524 to 144630536 12 - TSS region transcription start site region 64021
D6Mit114 6 144639629 to 144639726 97 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 114
Sox5it 6 144670427 to 144672720 2293 - sense intronic lncRNA gene SRY (sex determining region Y)-box 5, intronic transcript
Tssr59516 6 144672843 to 144672851 8 + TSS region transcription start site region 59516
Sox5os3 6 144672868 to 144693832 20964 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 3
Tssr59517 6 144672876 to 144672889 13 + TSS region transcription start site region 59517
Tssr59518 6 144672890 to 144672900 10 + TSS region transcription start site region 59518
Tssr64022 6 144685806 to 144685810 4 - TSS region transcription start site region 64022
Sox5os5 6 144723565 to 144724907 1342 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 5
Sox5os4 6 144758805 to 144760071 1266 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 4
Tssr64023 6 144779353 to 144779374 21 - TSS region transcription start site region 64023
Cpgi18151 6 144781437 to 144782841 1404 CpG island CpG island 18151
Tssr64024 6 144781907 to 144781988 81 - TSS region transcription start site region 64024
Gm32069 6 144788449 to 144807187 18738 - lncRNA gene predicted gene, 32069
Gm22792 6 144803500 to 144803632 132 - snoRNA gene predicted gene, 22792
Gm20124 6 144822909 to 144876984 54075 - pseudogene predicted gene, 20124
Gm32124 6 144877167 to 144897121 19954 - lncRNA gene predicted gene, 32124
Tssr2054 6 144902098 to 144902106 8 + TSS region transcription start site region 2054
Gm46721 6 144940587 to 144945029 4442 - lncRNA gene predicted gene, 46721
Tssr64025 6 144984358 to 144984373 15 - TSS region transcription start site region 64025
Bcat1 6 144993835 to 145076157 82322 - protein coding gene branched chain aminotransferase 1, cytosolic
Tssr64026 6 145028618 to 145028645 27 - TSS region transcription start site region 64026
Tssr64027 6 145030393 to 145030398 5 - TSS region transcription start site region 64027
Tssr64028 6 145032808 to 145032847 39 - TSS region transcription start site region 64028
Tssr64029 6 145034601 to 145034628 27 - TSS region transcription start site region 64029
Gm23071 6 145038074 to 145038188 114 - rRNA gene predicted gene, 23071
Tssr64030 6 145047505 to 145047523 18 - TSS region transcription start site region 64030
Tssr64031 6 145047530 to 145047554 24 - TSS region transcription start site region 64031
Gm26666 6 145047559 to 145050430 2871 + antisense lncRNA gene predicted gene, 26666
Tssr64032 6 145047605 to 145047614 9 - TSS region transcription start site region 64032
Tssr64033 6 145047636 to 145047660 24 - TSS region transcription start site region 64033
Tssr64034 6 145047664 to 145047697 33 - TSS region transcription start site region 64034
Tssr64035 6 145047725 to 145047757 32 - TSS region transcription start site region 64035
Cpgi18152 6 145048113 to 145049213 1100 CpG island CpG island 18152
Tssr59519 6 145048538 to 145048548 10 + TSS region transcription start site region 59519
Tssr64036 6 145048585 to 145048592 7 - TSS region transcription start site region 64036
Tssr64037 6 145048601 to 145048642 41 - TSS region transcription start site region 64037
Tssr64038 6 145048656 to 145048670 14 - TSS region transcription start site region 64038
Tssr64039 6 145048676 to 145048687 11 - TSS region transcription start site region 64039
Tssr64040 6 145048695 to 145048706 11 - TSS region transcription start site region 64040
Tssr64041 6 145048710 to 145048729 19 - TSS region transcription start site region 64041
Tssr64042 6 145048730 to 145048747 17 - TSS region transcription start site region 64042
Tssr64043 6 145048749 to 145048805 56 - TSS region transcription start site region 64043
Tssr64044 6 145048809 to 145048821 12 - TSS region transcription start site region 64044
Tssr64045 6 145048839 to 145048853 14 - TSS region transcription start site region 64045
Tssr2055 6 145049047 to 145049079 32 - TSS region transcription start site region 2055
Gm15687 6 145056389 to 145059892 3503 + antisense lncRNA gene predicted gene 15687
Gm38925 6 145064105 to 145069105 5000 + lncRNA gene predicted gene, 38925
Cpgi18153 6 145075097 to 145076166 1069 CpG island CpG island 18153
Tssr59520 6 145075339 to 145075342 3 + TSS region transcription start site region 59520
Tssr59521 6 145075398 to 145075416 18 + TSS region transcription start site region 59521
Tssr64046 6 145075938 to 145075954 16 - TSS region transcription start site region 64046
Tssr64047 6 145075960 to 145076018 58 - TSS region transcription start site region 64047
Tssr64048 6 145076032 to 145076061 29 - TSS region transcription start site region 64048
Tssr64049 6 145076066 to 145076088 22 - TSS region transcription start site region 64049
Tssr64050 6 145076090 to 145076103 13 - TSS region transcription start site region 64050
Tssr64051 6 145076106 to 145076107 1 - TSS region transcription start site region 64051
Tssr59522 6 145115616 to 145115658 42 + TSS region transcription start site region 59522
Lrmp 6 145115653 to 145174934 59281 + protein coding gene lymphoid-restricted membrane protein
Tssr59523 6 145121134 to 145121146 12 + TSS region transcription start site region 59523
Tssr59524 6 145121157 to 145121168 11 + TSS region transcription start site region 59524
Tssr59525 6 145121711 to 145121722 11 + TSS region transcription start site region 59525
Tssr59526 6 145121727 to 145121748 21 + TSS region transcription start site region 59526
Tssr59527 6 145121762 to 145121795 33 + TSS region transcription start site region 59527
Tssr59528 6 145121838 to 145121846 8 + TSS region transcription start site region 59528
Tssr59529 6 145121855 to 145121861 6 + TSS region transcription start site region 59529
Tssr59530 6 145121867 to 145121878 11 + TSS region transcription start site region 59530
Tssr59531 6 145121887 to 145121906 19 + TSS region transcription start site region 59531
Tssr59532 6 145121941 to 145121953 12 + TSS region transcription start site region 59532
Tssr64052 6 145122714 to 145122741 27 - TSS region transcription start site region 64052
Tssr59533 6 145123483 to 145123485 2 + TSS region transcription start site region 59533
Tssr59534 6 145126631 to 145126643 12 + TSS region transcription start site region 59534
Gm43910 6 145142157 to 145145397 3240 - unclassified gene predicted gene, 43910
Tssr59535 6 145145473 to 145145483 10 + TSS region transcription start site region 59535
Tssr59536 6 145160897 to 145160909 12 + TSS region transcription start site region 59536
Tssr59537 6 145163126 to 145163130 4 + TSS region transcription start site region 59537
Casc1 6 145174872 to 145211017 36145 - protein coding gene cancer susceptibility candidate 1
Tssr59538 6 145182261 to 145182308 47 + TSS region transcription start site region 59538
Gm15543 6 145182275 to 145187630 5355 + antisense lncRNA gene predicted gene 15543
Tssr59539 6 145182317 to 145182328 11 + TSS region transcription start site region 59539
Cpgi18154 6 145187433 to 145187771 338 CpG island CpG island 18154
Cpgi18155 6 145210679 to 145211549 870 CpG island CpG island 18155
Tssr64053 6 145210835 to 145210894 59 - TSS region transcription start site region 64053
Etfrf1 6 145211134 to 145216542 5408 + protein coding gene electron transfer flavoprotein regulatory factor 1
Tssr59540 6 145211141 to 145211222 81 + TSS region transcription start site region 59540
Tssr59541 6 145211229 to 145211240 11 + TSS region transcription start site region 59541
Tssr59542 6 145212525 to 145212529 4 + TSS region transcription start site region 59542
Ncilt 6 145216699 to 145250239 33540 QTL nuclear cytoplasmic invaginations in lung tumors
Pas18 6 145216699 to 145250239 33540 QTL pulmonary adenoma susceptibility 18
Kras 6 145216699 to 145250239 33540 - protein coding gene Kirsten rat sarcoma viral oncogene homolog
Tssr2056 6 145229435 to 145229442 7 - TSS region transcription start site region 2056
D6Mit57 6 145235142 to 145235338 196 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 57
Pas15 6 145235142 to 145235338 196 QTL pulmonary adenoma susceptibility 15
Gm44164 6 145238667 to 145241227 2560 - unclassified gene predicted gene, 44164
Tssr59543 6 145240465 to 145240471 6 + TSS region transcription start site region 59543
Cpgi18156 6 145249239 to 145251126 1887 CpG island CpG island 18156
Tssr64054 6 145250177 to 145250259 82 - TSS region transcription start site region 64054
Tssr64055 6 145250386 to 145250397 11 - TSS region transcription start site region 64055
Gm15706 6 145250552 to 145251856 1304 + lincRNA gene predicted gene 15706
Rps25-ps1 6 145266400 to 145266777 377 + pseudogene ribosomal protein S25, pseudogene 1
Tssr64056 6 145267860 to 145267864 4 - TSS region transcription start site region 64056
Cpgi18157 6 145276237 to 145276561 324 CpG island CpG island 18157
Tssr2057 6 145276305 to 145276320 15 - TSS region transcription start site region 2057
Gm22793 6 145287928 to 145288257 329 - unclassified non-coding RNA gene predicted gene, 22793
Tssr64057 6 145288243 to 145288260 17 - TSS region transcription start site region 64057
2010013B24Rik 6 145303152 to 145308951 5799 + lincRNA gene RIKEN cDNA 2010013B24 gene
Cpgi18158 6 145303667 to 145303941 274 CpG island CpG island 18158
Gm44428 6 145304310 to 145305183 873 + unclassified gene predicted gene, 44428
Tssr64058 6 145306651 to 145306653 2 - TSS region transcription start site region 64058
Tssr59544 6 145307049 to 145307050 1 + TSS region transcription start site region 59544
Tssr2058 6 145307330 to 145307334 4 - TSS region transcription start site region 2058
Gm15707 6 145315613 to 145316608 995 - pseudogene predicted gene 15707
Cpgi18159 6 145340082 to 145341621 1539 CpG island CpG island 18159
Tssr64059 6 145340091 to 145340108 17 - TSS region transcription start site region 64059
Tssr59545 6 145340282 to 145340296 14 + TSS region transcription start site region 59545
Tssr64060 6 145340673 to 145340687 14 - TSS region transcription start site region 64060
Tssr64061 6 145340700 to 145340719 19 - TSS region transcription start site region 64061
Tssr64062 6 145340778 to 145340799 21 - TSS region transcription start site region 64062
Tssr59546 6 145341014 to 145341035 21 + TSS region transcription start site region 59546
Tssr2059 6 145341464 to 145341470 6 + TSS region transcription start site region 2059
Tssr59547 6 145341481 to 145341494 13 + TSS region transcription start site region 59547
Tssr64063 6 145341754 to 145341779 25 - TSS region transcription start site region 64063
Tssr64064 6 145341874 to 145341909 35 - TSS region transcription start site region 64064
Gm38926 6 145347865 to 145348405 540 - lncRNA gene predicted gene, 38926
Gm23498 6 145366858 to 145366944 86 + snoRNA gene predicted gene, 23498
Tssr59548 6 145387593 to 145387601 8 + TSS region transcription start site region 59548
Tssr59549 6 145387603 to 145387621 18 + TSS region transcription start site region 59549
1700073E17Rik 6 145387625 to 145392224 4599 + pseudogene RIKEN cDNA 1700073E17 gene
Lmntd1 6 145387885 to 145450773 62888 - protein coding gene lamin tail domain containing 1
Tssr64065 6 145433993 to 145434013 20 - TSS region transcription start site region 64065
Tssr64066 6 145434046 to 145434054 8 - TSS region transcription start site region 64066
Tssr64067 6 145434059 to 145434071 12 - TSS region transcription start site region 64067
Tssr64068 6 145434079 to 145434090 11 - TSS region transcription start site region 64068
Tssr64069 6 145434932 to 145434953 21 - TSS region transcription start site region 64069
Gm15499 6 145441756 to 145444028 2272 + antisense lncRNA gene predicted gene 15499
Tssr64070 6 145450753 to 145450767 14 - TSS region transcription start site region 64070
Gm38475 6 145453345 to 145614319 160974 - lncRNA gene predicted gene, 38475
Gm25373 6 145464189 to 145464303 114 + snoRNA gene predicted gene, 25373