Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:143314349-145104356

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acigg2 6 125048587 to 144315227 19266640 QTL anti COL7 IgG1 antibody 2
Cpgi18149 6 143394392 to 143394769 377 CpG island CpG island 18149
Tssr59510 6 143402118 to 143402132 14 + TSS region transcription start site region 59510
Tssr59511 6 143404629 to 143404668 39 + TSS region transcription start site region 59511
Tssr59512 6 143409682 to 143409683 1 + TSS region transcription start site region 59512
Gm31427 6 143451103 to 143453042 1939 - lncRNA gene predicted gene, 31427
Gm38923 6 143454191 to 143455767 1576 - lncRNA gene predicted gene, 38923
Gm23272 6 143465269 to 143465397 128 - snoRNA gene predicted gene, 23272
4930579D09Rik 6 143533965 to 143535508 1543 - lincRNA gene RIKEN cDNA 4930579D09 gene
Tssr63998 6 143535502 to 143535513 11 - TSS region transcription start site region 63998
1700060C16Rik 6 143593353 to 143651288 57935 - lincRNA gene RIKEN cDNA 1700060C16 gene
D6Mit113 6 143610925 to 143611052 127 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 113
Idd6.2 6 143610925 to 146313558 2702633 QTL insulin dependent diabetes susceptibility 6.2
Tssr59513 6 143642819 to 143642825 6 + TSS region transcription start site region 59513
Gm31521 6 143682397 to 143689257 6860 + lncRNA gene predicted gene, 31521
Tssr63999 6 143757269 to 143757271 2 - TSS region transcription start site region 63999
Gm46720 6 143758337 to 143761423 3086 - lncRNA gene predicted gene, 46720
Sox5 6 143828425 to 144781977 953552 - protein coding gene SRY (sex determining region Y)-box 5
Cpgi18150 6 143833307 to 143833725 418 CpG island CpG island 18150
Gm32010 6 143833507 to 143883497 49990 + lncRNA gene predicted gene, 32010
Tssr64000 6 143909136 to 143909147 11 - TSS region transcription start site region 64000
Tssr64001 6 143925986 to 143925989 3 - TSS region transcription start site region 64001
Tssr64002 6 143947061 to 143947084 23 - TSS region transcription start site region 64002
Tssr64003 6 143947092 to 143947111 19 - TSS region transcription start site region 64003
Tssr59514 6 143947177 to 143947184 7 + TSS region transcription start site region 59514
Tssr59515 6 143955919 to 143955928 9 + TSS region transcription start site region 59515
Gm44068 6 143988740 to 143990867 2127 - unclassified gene predicted gene, 44068
Tssr2053 6 143992385 to 143992387 2 + TSS region transcription start site region 2053
Tssr64004 6 144020106 to 144020112 6 - TSS region transcription start site region 64004
Sox5os1 6 144021908 to 144023778 1870 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 1
Tssr64005 6 144097432 to 144097436 4 - TSS region transcription start site region 64005
Tssr64006 6 144099807 to 144099844 37 - TSS region transcription start site region 64006
Tssr64007 6 144204070 to 144204082 12 - TSS region transcription start site region 64007
Tssr64008 6 144204128 to 144204160 32 - TSS region transcription start site region 64008
Tssr64009 6 144204181 to 144204194 13 - TSS region transcription start site region 64009
Tssr64010 6 144209349 to 144209356 7 - TSS region transcription start site region 64010
Tssr64011 6 144209360 to 144209369 9 - TSS region transcription start site region 64011
Tssr64012 6 144209373 to 144209385 12 - TSS region transcription start site region 64012
Tssr64013 6 144209404 to 144209435 31 - TSS region transcription start site region 64013
Tssr64014 6 144209440 to 144209447 7 - TSS region transcription start site region 64014
Tssr64015 6 144209448 to 144209469 21 - TSS region transcription start site region 64015
Tssr64016 6 144209471 to 144209487 16 - TSS region transcription start site region 64016
Tssr64017 6 144209633 to 144209647 14 - TSS region transcription start site region 64017
Tssr64018 6 144209663 to 144209690 27 - TSS region transcription start site region 64018
Tssr64019 6 144209747 to 144209762 15 - TSS region transcription start site region 64019
Gm38531 6 144211110 to 144213327 2217 + lncRNA gene predicted gene, 38531
D6Jpk3 6 144254874 to 144255017 143 DNA segment DNA segment, Chr 6, Japan, Kominami 3
Tssr64020 6 144270900 to 144270902 2 - TSS region transcription start site region 64020
Sox5os2 6 144481225 to 144501416 20191 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 2
4930556H05Rik 6 144528700 to 144529166 466 unclassified gene RIKEN cDNA 4930556H05 gene
Tssr64021 6 144630524 to 144630536 12 - TSS region transcription start site region 64021
D6Mit114 6 144639629 to 144639726 97 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 114
Sox5it 6 144670427 to 144672720 2293 - sense intronic lncRNA gene SRY (sex determining region Y)-box 5, intronic transcript
Tssr59516 6 144672843 to 144672851 8 + TSS region transcription start site region 59516
Sox5os3 6 144672868 to 144693832 20964 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 3
Tssr59517 6 144672876 to 144672889 13 + TSS region transcription start site region 59517
Tssr59518 6 144672890 to 144672900 10 + TSS region transcription start site region 59518
Tssr64022 6 144685806 to 144685810 4 - TSS region transcription start site region 64022
Sox5os5 6 144723565 to 144724907 1342 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 5
Sox5os4 6 144758805 to 144760071 1266 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 4
Tssr64023 6 144779353 to 144779374 21 - TSS region transcription start site region 64023
Cpgi18151 6 144781437 to 144782841 1404 CpG island CpG island 18151
Tssr64024 6 144781907 to 144781988 81 - TSS region transcription start site region 64024
Gm32069 6 144788449 to 144807187 18738 - lncRNA gene predicted gene, 32069
Gm22792 6 144803500 to 144803632 132 - snoRNA gene predicted gene, 22792
Gm20124 6 144822909 to 144876984 54075 - pseudogene predicted gene, 20124
Gm32124 6 144877167 to 144897121 19954 - lncRNA gene predicted gene, 32124
Tssr2054 6 144902098 to 144902106 8 + TSS region transcription start site region 2054
Gm46721 6 144940587 to 144945029 4442 - lncRNA gene predicted gene, 46721
Tssr64025 6 144984358 to 144984373 15 - TSS region transcription start site region 64025
Bcat1 6 144993835 to 145076157 82322 - protein coding gene branched chain aminotransferase 1, cytosolic
Tssr64026 6 145028618 to 145028645 27 - TSS region transcription start site region 64026
Tssr64027 6 145030393 to 145030398 5 - TSS region transcription start site region 64027
Tssr64028 6 145032808 to 145032847 39 - TSS region transcription start site region 64028
Tssr64029 6 145034601 to 145034628 27 - TSS region transcription start site region 64029
Gm23071 6 145038074 to 145038188 114 - rRNA gene predicted gene, 23071
Tssr64030 6 145047505 to 145047523 18 - TSS region transcription start site region 64030
Tssr64031 6 145047530 to 145047554 24 - TSS region transcription start site region 64031
Gm26666 6 145047559 to 145050430 2871 + antisense lncRNA gene predicted gene, 26666
Tssr64032 6 145047605 to 145047614 9 - TSS region transcription start site region 64032
Tssr64033 6 145047636 to 145047660 24 - TSS region transcription start site region 64033
Tssr64034 6 145047664 to 145047697 33 - TSS region transcription start site region 64034
Tssr64035 6 145047725 to 145047757 32 - TSS region transcription start site region 64035
Cpgi18152 6 145048113 to 145049213 1100 CpG island CpG island 18152
Tssr59519 6 145048538 to 145048548 10 + TSS region transcription start site region 59519
Tssr64036 6 145048585 to 145048592 7 - TSS region transcription start site region 64036
Tssr64037 6 145048601 to 145048642 41 - TSS region transcription start site region 64037
Tssr64038 6 145048656 to 145048670 14 - TSS region transcription start site region 64038
Tssr64039 6 145048676 to 145048687 11 - TSS region transcription start site region 64039
Tssr64040 6 145048695 to 145048706 11 - TSS region transcription start site region 64040
Tssr64041 6 145048710 to 145048729 19 - TSS region transcription start site region 64041
Tssr64042 6 145048730 to 145048747 17 - TSS region transcription start site region 64042
Tssr64043 6 145048749 to 145048805 56 - TSS region transcription start site region 64043
Tssr64044 6 145048809 to 145048821 12 - TSS region transcription start site region 64044
Tssr64045 6 145048839 to 145048853 14 - TSS region transcription start site region 64045
Tssr2055 6 145049047 to 145049079 32 - TSS region transcription start site region 2055
Gm15687 6 145056389 to 145059892 3503 + antisense lncRNA gene predicted gene 15687
Gm38925 6 145064105 to 145069105 5000 + lncRNA gene predicted gene, 38925
Cpgi18153 6 145075097 to 145076166 1069 CpG island CpG island 18153
Tssr59520 6 145075339 to 145075342 3 + TSS region transcription start site region 59520
Tssr59521 6 145075398 to 145075416 18 + TSS region transcription start site region 59521
Tssr64046 6 145075938 to 145075954 16 - TSS region transcription start site region 64046
Tssr64047 6 145075960 to 145076018 58 - TSS region transcription start site region 64047
Tssr64048 6 145076032 to 145076061 29 - TSS region transcription start site region 64048
Tssr64049 6 145076066 to 145076088 22 - TSS region transcription start site region 64049
Tssr64050 6 145076090 to 145076103 13 - TSS region transcription start site region 64050
Tssr64051 6 145076106 to 145076107 1 - TSS region transcription start site region 64051