Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:143085925-144136052

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
C2cd5 6 143010920 to 143100141 89221 - protein coding gene C2 calcium-dependent domain containing 5
Cpgi18144 6 143099258 to 143100454 1196 CpG island CpG island 18144
Tssr63989 6 143099791 to 143099830 39 - TSS region transcription start site region 63989
Tssr63990 6 143099831 to 143099858 27 - TSS region transcription start site region 63990
Tssr63991 6 143100028 to 143100109 81 - TSS region transcription start site region 63991
Tssr63992 6 143100119 to 143100163 44 - TSS region transcription start site region 63992
Cpgi18145 6 143107397 to 143107598 201 CpG island CpG island 18145
Gm31108 6 143109214 to 143153931 44717 - lincRNA gene predicted gene, 31108
Gm44312 6 143124590 to 143125058 468 - pseudogene predicted gene, 44312
Gm44306 6 143135087 to 143135289 202 + pseudogene predicted gene, 44306
Cpgi18146 6 143143814 to 143144125 311 CpG island CpG island 18146
Gm38921 6 143147029 to 143157946 10917 + lncRNA gene predicted gene, 38921
Tssr63993 6 143162358 to 143162359 1 - TSS region transcription start site region 63993
Cpgi18147 6 143166596 to 143167990 1394 CpG island CpG island 18147
Etnk1 6 143166866 to 143208546 41680 + protein coding gene ethanolamine kinase 1
Tssr63994 6 143167077 to 143167088 11 - TSS region transcription start site region 63994
Tssr59499 6 143167210 to 143167267 57 + TSS region transcription start site region 59499
Tssr59500 6 143167271 to 143167300 29 + TSS region transcription start site region 59500
Tssr59501 6 143169925 to 143169929 4 + TSS region transcription start site region 59501
Tssr59502 6 143171442 to 143171455 13 + TSS region transcription start site region 59502
Tssr59503 6 143183317 to 143183320 3 + TSS region transcription start site region 59503
Tssr59504 6 143203960 to 143203976 16 + TSS region transcription start site region 59504
Tssr59505 6 143204025 to 143204038 13 + TSS region transcription start site region 59505
Tssr59506 6 143206237 to 143206273 36 + TSS region transcription start site region 59506
1700126G02Rik 6 143209737 to 143221375 11638 - antisense lncRNA gene RIKEN cDNA 1700126G02 gene
Tssr59507 6 143213772 to 143213777 5 + TSS region transcription start site region 59507
Tssr63995 6 143221420 to 143221431 11 - TSS region transcription start site region 63995
Tssr63996 6 143221441 to 143221454 13 - TSS region transcription start site region 63996
Cpgi18148 6 143221914 to 143222070 156 CpG island CpG island 18148
4930407I02Rik 6 143232345 to 143260627 28282 - lncRNA gene RIKEN cDNA 4930407I02 gene
Tssr63997 6 143233353 to 143233367 14 - TSS region transcription start site region 63997
D6Ertd474e 6 143245888 to 143297272 51384 + lincRNA gene DNA segment, Chr 6, ERATO Doi 474, expressed
Tssr59508 6 143285966 to 143285984 18 + TSS region transcription start site region 59508
Tssr59509 6 143285988 to 143285999 11 + TSS region transcription start site region 59509
Cpgi18149 6 143394392 to 143394769 377 CpG island CpG island 18149
Tssr59510 6 143402118 to 143402132 14 + TSS region transcription start site region 59510
Tssr59511 6 143404629 to 143404668 39 + TSS region transcription start site region 59511
Tssr59512 6 143409682 to 143409683 1 + TSS region transcription start site region 59512
Gm31427 6 143451103 to 143453042 1939 - lncRNA gene predicted gene, 31427
Gm38923 6 143454191 to 143455767 1576 - lncRNA gene predicted gene, 38923
Gm23272 6 143465269 to 143465397 128 - snoRNA gene predicted gene, 23272
4930579D09Rik 6 143533965 to 143535508 1543 - lincRNA gene RIKEN cDNA 4930579D09 gene
Tssr63998 6 143535502 to 143535513 11 - TSS region transcription start site region 63998
1700060C16Rik 6 143593353 to 143651288 57935 - lincRNA gene RIKEN cDNA 1700060C16 gene
D6Mit113 6 143610925 to 143611052 127 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 113
Idd6.2 6 143610925 to 146313558 2702633 QTL insulin dependent diabetes susceptibility 6.2
Tssr59513 6 143642819 to 143642825 6 + TSS region transcription start site region 59513
Gm31521 6 143682397 to 143689257 6860 + lncRNA gene predicted gene, 31521
Tssr63999 6 143757269 to 143757271 2 - TSS region transcription start site region 63999
Gm46720 6 143758337 to 143761423 3086 - lncRNA gene predicted gene, 46720
Sox5 6 143828425 to 144781977 953552 - protein coding gene SRY (sex determining region Y)-box 5
Cpgi18150 6 143833307 to 143833725 418 CpG island CpG island 18150
Gm32010 6 143833507 to 143883497 49990 + lncRNA gene predicted gene, 32010
Tssr64000 6 143909136 to 143909147 11 - TSS region transcription start site region 64000
Tssr64001 6 143925986 to 143925989 3 - TSS region transcription start site region 64001
Tssr64002 6 143947061 to 143947084 23 - TSS region transcription start site region 64002
Tssr64003 6 143947092 to 143947111 19 - TSS region transcription start site region 64003
Tssr59514 6 143947177 to 143947184 7 + TSS region transcription start site region 59514
Tssr59515 6 143955919 to 143955928 9 + TSS region transcription start site region 59515
Gm44068 6 143988740 to 143990867 2127 - unclassified gene predicted gene, 44068
Tssr2053 6 143992385 to 143992387 2 + TSS region transcription start site region 2053
Tssr64004 6 144020106 to 144020112 6 - TSS region transcription start site region 64004
Sox5os1 6 144021908 to 144023778 1870 + antisense lncRNA gene SRY (sex determining region Y)-box 5, opposite strand 1
Tssr64005 6 144097432 to 144097436 4 - TSS region transcription start site region 64005
Tssr64006 6 144099807 to 144099844 37 - TSS region transcription start site region 64006