Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:142506143-143066387

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ldhb 6 142490249 to 142507957 17708 - protein coding gene lactate dehydrogenase B
Cpgi18135 6 142507079 to 142508236 1157 CpG island CpG island 18135
Tssr63957 6 142507910 to 142507962 52 - TSS region transcription start site region 63957
Gm38919 6 142518187 to 142519531 1344 + lncRNA gene predicted gene, 38919
Gm46979 6 142521180 to 142531477 10297 + lncRNA gene predicted gene, 46979
D6Mit60 6 142523603 to 142523741 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 60
Tssr59484 6 142537167 to 142537172 5 + TSS region transcription start site region 59484
Cpgi18136 6 142538447 to 142538846 399 CpG island CpG island 18136
Gm38920 6 142542552 to 142544718 2166 - lncRNA gene predicted gene, 38920
Kcnj8 6 142564837 to 142571614 6777 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 8
Cpgi18137 6 142565975 to 142566434 459 CpG island CpG island 18137
Cpgi18138 6 142570030 to 142570486 456 CpG island CpG island 18138
Cpgi18139 6 142571014 to 142571689 675 CpG island CpG island 18139
Tssr63958 6 142571291 to 142571297 6 - TSS region transcription start site region 63958
Tssr63959 6 142571303 to 142571353 50 - TSS region transcription start site region 63959
Tssr63960 6 142571498 to 142571527 29 - TSS region transcription start site region 63960
Tssr63961 6 142571625 to 142571631 6 - TSS region transcription start site region 63961
Abcc9 6 142587862 to 142702315 114453 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 9
Tssr63962 6 142589927 to 142589948 21 - TSS region transcription start site region 63962
5330439B14Rik 6 142614595 to 142626462 11867 + antisense lncRNA gene RIKEN cDNA 5330439B14 gene
Tssr59485 6 142677540 to 142677542 2 + TSS region transcription start site region 59485
Tssr59486 6 142683463 to 142683470 7 + TSS region transcription start site region 59486
Tssr63963 6 142701956 to 142701968 12 - TSS region transcription start site region 63963
Cpgi18140 6 142702123 to 142702574 451 CpG island CpG island 18140
Tssr63964 6 142702222 to 142702255 33 - TSS region transcription start site region 63964
Tssr63965 6 142702259 to 142702290 31 - TSS region transcription start site region 63965
Tssr63966 6 142702299 to 142702319 20 - TSS region transcription start site region 63966
Tssr63967 6 142702324 to 142702372 48 - TSS region transcription start site region 63967
Tssr63968 6 142702565 to 142702586 21 - TSS region transcription start site region 63968
D6Mit259 6 142744515 to 142744630 115 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 259
Tssr59487 6 142751591 to 142751603 12 + TSS region transcription start site region 59487
Tssr59488 6 142751628 to 142751641 13 + TSS region transcription start site region 59488
Cpgi18141 6 142756467 to 142757201 734 CpG island CpG island 18141
Tssr59489 6 142756680 to 142756700 20 + TSS region transcription start site region 59489
Cmas 6 142756686 to 142775714 19028 + protein coding gene cytidine monophospho-N-acetylneuraminic acid synthetase
Tssr59490 6 142756710 to 142756756 46 + TSS region transcription start site region 59490
Tssr59491 6 142756758 to 142756775 17 + TSS region transcription start site region 59491
Tssr59492 6 142756823 to 142756852 29 + TSS region transcription start site region 59492
Tssr59493 6 142756877 to 142756888 11 + TSS region transcription start site region 59493
Tssr59494 6 142756967 to 142756974 7 + TSS region transcription start site region 59494
Gm46980 6 142757033 to 142759854 2821 + lncRNA gene predicted gene, 46980
Tssr63969 6 142757174 to 142757186 12 - TSS region transcription start site region 63969
Tssr63970 6 142757240 to 142757251 11 - TSS region transcription start site region 63970
Tssr63971 6 142779068 to 142779075 7 - TSS region transcription start site region 63971
Gm46981 6 142783705 to 142786305 2600 + lncRNA gene predicted gene, 46981
Sult6b2 6 142785781 to 142804466 18685 - protein coding gene sulfotransferase family 6B, member 2
Cpgi18142 6 142786143 to 142786387 244 CpG island CpG island 18142
Tssr63972 6 142804493 to 142804511 18 - TSS region transcription start site region 63972
Gm7457 6 142814231 to 142833494 19263 + lncRNA gene predicted gene 7457
Tssr59495 6 142814344 to 142814385 41 + TSS region transcription start site region 59495
St8sia1 6 142821545 to 142964452 142907 - protein coding gene ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
Tssr63973 6 142858505 to 142858509 4 - TSS region transcription start site region 63973
Tssr63974 6 142867916 to 142867937 21 - TSS region transcription start site region 63974
Tssr59496 6 142882807 to 142882855 48 + TSS region transcription start site region 59496
Tssr63975 6 142883828 to 142883843 15 - TSS region transcription start site region 63975
Tssr63976 6 142903357 to 142903363 6 - TSS region transcription start site region 63976
Tssr59497 6 142917819 to 142917827 8 + TSS region transcription start site region 59497
Cpgi18143 6 142963508 to 142965226 1718 CpG island CpG island 18143
Tssr63977 6 142964108 to 142964128 20 - TSS region transcription start site region 63977
Tssr63978 6 142964135 to 142964192 57 - TSS region transcription start site region 63978
Tssr63979 6 142964368 to 142964403 35 - TSS region transcription start site region 63979
Tssr63980 6 142964404 to 142964438 34 - TSS region transcription start site region 63980
Tssr63981 6 142964796 to 142964839 43 - TSS region transcription start site region 63981
Tssr59498 6 142967776 to 142967793 17 + TSS region transcription start site region 59498
Gm7468 6 142970662 to 142971313 651 - pseudogene predicted gene 7468
A930014E10Rik 6 142971752 to 142973818 2066 + lincRNA gene RIKEN cDNA A930014E10 gene
4930434O05Rik 6 142989610 to 142989996 386 + lincRNA gene RIKEN cDNA 4930434O05 gene
Tssr63982 6 142989691 to 142989721 30 - TSS region transcription start site region 63982
Tssr63983 6 142989733 to 142989754 21 - TSS region transcription start site region 63983
C2cd5 6 143010920 to 143100141 89221 - protein coding gene C2 calcium-dependent domain containing 5
Tssr2051 6 143035143 to 143035188 45 - TSS region transcription start site region 2051
Tssr63984 6 143057911 to 143057912 1 - TSS region transcription start site region 63984