Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:140661976-141931981

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Aebp2 6 140622663 to 140678472 55809 + protein coding gene AE binding protein 2
Gm38918 6 140669133 to 140672791 3658 - lncRNA gene predicted gene, 38918
Gm30215 6 140681748 to 140826797 145049 + lncRNA gene predicted gene, 30215
Cpgi18129 6 140702345 to 140702496 151 CpG island CpG island 18129
Tssr63927 6 140720190 to 140720200 10 - TSS region transcription start site region 63927
Gm11077 6 140729284 to 140756053 26769 + protein coding gene predicted gene 11077
Cpgi18130 6 140733621 to 140733827 206 CpG island CpG island 18130
Rpl38-ps2 6 140746960 to 140747172 212 - pseudogene ribosomal protein L38, pseudogene 2
Tssr63928 6 140747211 to 140747226 15 - TSS region transcription start site region 63928
Tssr59443 6 140758949 to 140758956 7 + TSS region transcription start site region 59443
Tssr59444 6 140776866 to 140776870 4 + TSS region transcription start site region 59444
Gm43925 6 140784499 to 140784704 205 - pseudogene predicted gene, 43925
Gm30524 6 140955609 to 141044134 88525 + lincRNA gene predicted gene, 30524
Gm43927 6 141008169 to 141008285 116 - pseudogene predicted gene, 43927
Tssr59445 6 141138026 to 141138037 11 + TSS region transcription start site region 59445
Gm7384 6 141138047 to 141138576 529 + pseudogene predicted gene 7384
Gm28523 6 141246920 to 141250009 3089 - antisense lncRNA gene predicted gene 28523
Tssr59446 6 141249161 to 141249175 14 + TSS region transcription start site region 59446
Pde3a 6 141249269 to 141506862 257593 + protein coding gene phosphodiesterase 3A, cGMP inhibited
Cpgi18131 6 141249405 to 141250608 1203 CpG island CpG island 18131
Tssr63929 6 141249814 to 141249895 81 - TSS region transcription start site region 63929
Tssr59447 6 141249984 to 141249998 14 + TSS region transcription start site region 59447
Tssr59448 6 141274954 to 141274972 18 + TSS region transcription start site region 59448
Tssr59449 6 141274975 to 141274991 16 + TSS region transcription start site region 59449
Tssr59450 6 141275009 to 141275025 16 + TSS region transcription start site region 59450
Tssr59451 6 141275083 to 141275117 34 + TSS region transcription start site region 59451
Tssr59452 6 141275327 to 141275340 13 + TSS region transcription start site region 59452
Tssr59453 6 141296976 to 141296981 5 + TSS region transcription start site region 59453
Gm10400 6 141340553 to 141344387 3834 + lncRNA gene predicted gene 10400
Tssr59454 6 141406779 to 141406790 11 + TSS region transcription start site region 59454
Gm10210 6 141430582 to 141433914 3332 unclassified gene predicted gene 10210
Gm43958 6 141442360 to 141445903 3543 + unclassified gene predicted gene, 43958
Tssr59455 6 141454741 to 141454745 4 + TSS region transcription start site region 59455
Slco1c1 6 141524377 to 141570177 45800 + protein coding gene solute carrier organic anion transporter family, member 1c1
Tssr59456 6 141524379 to 141524449 70 + TSS region transcription start site region 59456
Tssr59457 6 141524568 to 141524586 18 + TSS region transcription start site region 59457
Tssr59458 6 141524589 to 141524629 40 + TSS region transcription start site region 59458
Tssr59459 6 141524658 to 141524672 14 + TSS region transcription start site region 59459
Tssr63930 6 141601146 to 141601182 36 - TSS region transcription start site region 63930
Tssr59460 6 141629499 to 141629527 28 + TSS region transcription start site region 59460
Slco1b2 6 141629518 to 141686646 57128 + protein coding gene solute carrier organic anion transporter family, member 1b2
Del(6Slco1b2-Slco1a5)1Nki 6 141629518 to 142322981 693463 chromosomal deletion deletion, Chr 6, the Netherlands Cancer Institute 1
Tssr59461 6 141632417 to 141632432 15 + TSS region transcription start site region 59461
Tssr59462 6 141632600 to 141632611 11 + TSS region transcription start site region 59462
D6Mit112 6 141632908 to 141633025 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 112
Tssr59463 6 141644910 to 141644917 7 + TSS region transcription start site region 59463
Tssr59464 6 141671879 to 141671889 10 + TSS region transcription start site region 59464
Tssr59465 6 141683228 to 141683239 11 + TSS region transcription start site region 59465
Tssr59466 6 141685758 to 141685769 11 + TSS region transcription start site region 59466
Gm5724 6 141708118 to 141773810 65692 - protein coding gene predicted gene 5724
Gm23069 6 141714781 to 141715091 310 - unclassified non-coding RNA gene predicted gene, 23069
Tssr63931 6 141778087 to 141778098 11 - TSS region transcription start site region 63931
Tssr63932 6 141778101 to 141778124 23 - TSS region transcription start site region 63932
Slco1a4 6 141805440 to 141856199 50759 - protein coding gene solute carrier organic anion transporter family, member 1a4
Tssr63933 6 141855524 to 141855570 46 - TSS region transcription start site region 63933
Tssr2050 6 141856184 to 141856191 7 - TSS region transcription start site region 2050
Tssr63934 6 141856192 to 141856234 42 - TSS region transcription start site region 63934
Tssr59467 6 141866343 to 141866356 13 + TSS region transcription start site region 59467
Tssr59468 6 141866358 to 141866365 7 + TSS region transcription start site region 59468
Gm30784 6 141866358 to 141875220 8862 + lincRNA gene predicted gene, 30784
Tssr59469 6 141866382 to 141866389 7 + TSS region transcription start site region 59469
Tssr59470 6 141876048 to 141876050 2 + TSS region transcription start site region 59470
Gm30843 6 141876070 to 141909012 32942 + lncRNA gene predicted gene, 30843
Tssr59471 6 141881106 to 141881129 23 + TSS region transcription start site region 59471
Slco1a1 6 141907282 to 141946962 39680 - protein coding gene solute carrier organic anion transporter family, member 1a1
Gm22036 6 141915078 to 141915292 214 - unclassified non-coding RNA gene predicted gene, 22036
D6Mit136 6 141921077 to 141921210 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 136