Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:140269741-142639745

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm38917 6 140272410 to 140285735 13325 - lncRNA gene predicted gene, 38917
Gm3961 6 140295463 to 140296456 993 - unclassified gene predicted gene 3961
Cpgi18124 6 140296009 to 140296384 375 CpG island CpG island 18124
1700102F20Rik 6 140309071 to 140309740 669 + unclassified gene RIKEN cDNA 1700102F20 gene
n-R5s168 6 140319630 to 140319733 103 + rRNA gene nuclear encoded rRNA 5S 168
Cpgi18125 6 140385792 to 140385980 188 CpG island CpG island 18125
Tssr63921 6 140398118 to 140398139 21 - TSS region transcription start site region 63921
Gm5051 6 140420171 to 140420655 484 + pseudogene predicted gene 5051
Cpgi18126 6 140423602 to 140425095 1493 CpG island CpG island 18126
Tssr59411 6 140423911 to 140423960 49 + TSS region transcription start site region 59411
Tssr59412 6 140424046 to 140424082 36 + TSS region transcription start site region 59412
Plekha5 6 140424054 to 140597110 173056 + protein coding gene pleckstrin homology domain containing, family A member 5
Tssr59413 6 140424086 to 140424138 52 + TSS region transcription start site region 59413
Tssr59414 6 140424154 to 140424166 12 + TSS region transcription start site region 59414
Tssr59415 6 140432962 to 140432984 22 + TSS region transcription start site region 59415
Tssr59416 6 140479776 to 140479788 12 + TSS region transcription start site region 59416
Tssr59417 6 140479805 to 140479824 19 + TSS region transcription start site region 59417
Tssr59418 6 140479825 to 140479836 11 + TSS region transcription start site region 59418
Tssr59419 6 140491024 to 140491046 22 + TSS region transcription start site region 59419
Tssr59420 6 140491064 to 140491073 9 + TSS region transcription start site region 59420
Cpgi18127 6 140491092 to 140491249 157 CpG island CpG island 18127
Tssr59421 6 140491116 to 140491127 11 + TSS region transcription start site region 59421
Tssr63922 6 140513698 to 140513702 4 - TSS region transcription start site region 63922
Tssr59422 6 140514916 to 140514950 34 + TSS region transcription start site region 59422
Tssr59423 6 140516434 to 140516443 9 + TSS region transcription start site region 59423
Tssr59424 6 140527013 to 140527018 5 + TSS region transcription start site region 59424
Tssr59425 6 140530960 to 140530964 4 + TSS region transcription start site region 59425
Gm25780 6 140530963 to 140531215 252 + unclassified non-coding RNA gene predicted gene, 25780
Tssr59426 6 140591607 to 140591617 10 + TSS region transcription start site region 59426
Tssr59427 6 140591627 to 140591641 14 + TSS region transcription start site region 59427
Tssr59428 6 140591644 to 140591662 18 + TSS region transcription start site region 59428
Tssr2049 6 140601688 to 140601693 5 + TSS region transcription start site region 2049
Tssr59429 6 140607498 to 140607521 23 + TSS region transcription start site region 59429
Tssr63923 6 140613927 to 140613933 6 - TSS region transcription start site region 63923
Gm44013 6 140620162 to 140622423 2261 - unclassified gene predicted gene, 44013
Tssr63924 6 140620587 to 140620607 20 - TSS region transcription start site region 63924
Tssr59430 6 140621046 to 140621055 9 + TSS region transcription start site region 59430
Tssr59431 6 140621088 to 140621108 20 + TSS region transcription start site region 59431
Tssr59432 6 140621115 to 140621146 31 + TSS region transcription start site region 59432
Tssr59433 6 140622607 to 140622627 20 + TSS region transcription start site region 59433
Tssr59434 6 140622640 to 140622659 19 + TSS region transcription start site region 59434
Aebp2 6 140622663 to 140678472 55809 + protein coding gene AE binding protein 2
Tssr59435 6 140622695 to 140622708 13 + TSS region transcription start site region 59435
Cpgi18128 6 140622911 to 140625077 2166 CpG island CpG island 18128
Tssr59436 6 140623476 to 140623615 139 + TSS region transcription start site region 59436
Tssr59437 6 140623646 to 140623715 69 + TSS region transcription start site region 59437
Tssr59438 6 140623831 to 140623861 30 + TSS region transcription start site region 59438
Tssr59439 6 140623898 to 140623911 13 + TSS region transcription start site region 59439
Tssr63925 6 140624659 to 140624666 7 - TSS region transcription start site region 63925
Tssr63926 6 140625412 to 140625416 4 - TSS region transcription start site region 63926
Tssr59440 6 140639983 to 140639987 4 + TSS region transcription start site region 59440
Tssr59441 6 140642208 to 140642223 15 + TSS region transcription start site region 59441
Tssr59442 6 140651083 to 140651117 34 + TSS region transcription start site region 59442
Gm38918 6 140669133 to 140672791 3658 - lncRNA gene predicted gene, 38918
Gm30215 6 140681748 to 140826797 145049 + lncRNA gene predicted gene, 30215
Cpgi18129 6 140702345 to 140702496 151 CpG island CpG island 18129
Tssr63927 6 140720190 to 140720200 10 - TSS region transcription start site region 63927
Gm11077 6 140729284 to 140756053 26769 + protein coding gene predicted gene 11077
Cpgi18130 6 140733621 to 140733827 206 CpG island CpG island 18130
Rpl38-ps2 6 140746960 to 140747172 212 - pseudogene ribosomal protein L38, pseudogene 2
Tssr63928 6 140747211 to 140747226 15 - TSS region transcription start site region 63928
Tssr59443 6 140758949 to 140758956 7 + TSS region transcription start site region 59443
Tssr59444 6 140776866 to 140776870 4 + TSS region transcription start site region 59444
Gm43925 6 140784499 to 140784704 205 - pseudogene predicted gene, 43925
Gm30524 6 140955609 to 141044134 88525 + lincRNA gene predicted gene, 30524
Gm43927 6 141008169 to 141008285 116 - pseudogene predicted gene, 43927
Tssr59445 6 141138026 to 141138037 11 + TSS region transcription start site region 59445
Gm7384 6 141138047 to 141138576 529 + pseudogene predicted gene 7384
Gm28523 6 141246920 to 141250009 3089 - antisense lncRNA gene predicted gene 28523
Tssr59446 6 141249161 to 141249175 14 + TSS region transcription start site region 59446
Pde3a 6 141249269 to 141506862 257593 + protein coding gene phosphodiesterase 3A, cGMP inhibited
Cpgi18131 6 141249405 to 141250608 1203 CpG island CpG island 18131
Tssr63929 6 141249814 to 141249895 81 - TSS region transcription start site region 63929
Tssr59447 6 141249984 to 141249998 14 + TSS region transcription start site region 59447
Tssr59448 6 141274954 to 141274972 18 + TSS region transcription start site region 59448
Tssr59449 6 141274975 to 141274991 16 + TSS region transcription start site region 59449
Tssr59450 6 141275009 to 141275025 16 + TSS region transcription start site region 59450
Tssr59451 6 141275083 to 141275117 34 + TSS region transcription start site region 59451
Tssr59452 6 141275327 to 141275340 13 + TSS region transcription start site region 59452
Tssr59453 6 141296976 to 141296981 5 + TSS region transcription start site region 59453
Gm10400 6 141340553 to 141344387 3834 + lncRNA gene predicted gene 10400
Tssr59454 6 141406779 to 141406790 11 + TSS region transcription start site region 59454
Gm10210 6 141430582 to 141433914 3332 unclassified gene predicted gene 10210
Gm43958 6 141442360 to 141445903 3543 + unclassified gene predicted gene, 43958
Tssr59455 6 141454741 to 141454745 4 + TSS region transcription start site region 59455
Slco1c1 6 141524377 to 141570177 45800 + protein coding gene solute carrier organic anion transporter family, member 1c1
Tssr59456 6 141524379 to 141524449 70 + TSS region transcription start site region 59456
Tssr59457 6 141524568 to 141524586 18 + TSS region transcription start site region 59457
Tssr59458 6 141524589 to 141524629 40 + TSS region transcription start site region 59458
Tssr59459 6 141524658 to 141524672 14 + TSS region transcription start site region 59459
Tssr63930 6 141601146 to 141601182 36 - TSS region transcription start site region 63930
Tssr59460 6 141629499 to 141629527 28 + TSS region transcription start site region 59460
Del(6Slco1b2-Slco1a5)1Nki 6 141629518 to 142322981 693463 chromosomal deletion deletion, Chr 6, the Netherlands Cancer Institute 1
Slco1b2 6 141629518 to 141686646 57128 + protein coding gene solute carrier organic anion transporter family, member 1b2
Tssr59461 6 141632417 to 141632432 15 + TSS region transcription start site region 59461
Tssr59462 6 141632600 to 141632611 11 + TSS region transcription start site region 59462
D6Mit112 6 141632908 to 141633025 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 112
Tssr59463 6 141644910 to 141644917 7 + TSS region transcription start site region 59463
Tssr59464 6 141671879 to 141671889 10 + TSS region transcription start site region 59464
Tssr59465 6 141683228 to 141683239 11 + TSS region transcription start site region 59465
Tssr59466 6 141685758 to 141685769 11 + TSS region transcription start site region 59466
Gm5724 6 141708118 to 141773810 65692 - protein coding gene predicted gene 5724
Gm23069 6 141714781 to 141715091 310 - unclassified non-coding RNA gene predicted gene, 23069
Tssr63931 6 141778087 to 141778098 11 - TSS region transcription start site region 63931
Tssr63932 6 141778101 to 141778124 23 - TSS region transcription start site region 63932
Slco1a4 6 141805440 to 141856199 50759 - protein coding gene solute carrier organic anion transporter family, member 1a4
Tssr63933 6 141855524 to 141855570 46 - TSS region transcription start site region 63933
Tssr2050 6 141856184 to 141856191 7 - TSS region transcription start site region 2050
Tssr63934 6 141856192 to 141856234 42 - TSS region transcription start site region 63934
Tssr59467 6 141866343 to 141866356 13 + TSS region transcription start site region 59467
Tssr59468 6 141866358 to 141866365 7 + TSS region transcription start site region 59468
Gm30784 6 141866358 to 141875220 8862 + lincRNA gene predicted gene, 30784
Tssr59469 6 141866382 to 141866389 7 + TSS region transcription start site region 59469
Tssr59470 6 141876048 to 141876050 2 + TSS region transcription start site region 59470
Gm30843 6 141876070 to 141909012 32942 + lncRNA gene predicted gene, 30843
Tssr59471 6 141881106 to 141881129 23 + TSS region transcription start site region 59471
Slco1a1 6 141907282 to 141946962 39680 - protein coding gene solute carrier organic anion transporter family, member 1a1
Gm22036 6 141915078 to 141915292 214 - unclassified non-coding RNA gene predicted gene, 22036
D6Mit136 6 141921077 to 141921210 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 136
Tssr63935 6 141946791 to 141946821 30 - TSS region transcription start site region 63935
Tssr63936 6 141946827 to 141946836 9 - TSS region transcription start site region 63936
Tssr63937 6 141946960 to 141946964 4 - TSS region transcription start site region 63937
Gm6614 6 141971845 to 142011414 39569 - protein coding gene predicted gene 6614
Gm23775 6 141983247 to 141983495 248 - unclassified non-coding RNA gene predicted gene, 23775
Slco1a6 6 142085761 to 142186177 100416 - protein coding gene solute carrier organic anion transporter family, member 1a6
D6Mit293.1 6 142095977 to 142096094 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 293.1
D6Mit293 6 142096080 to 142096188 108 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 293
Gm18159 6 142110456 to 142111525 1069 + pseudogene predicted gene, 18159
Tssr63938 6 142161083 to 142161099 16 - TSS region transcription start site region 63938
Tssr59472 6 142161491 to 142161494 3 + TSS region transcription start site region 59472
Gm20400 6 142161493 to 142173796 12303 + antisense lncRNA gene predicted gene 20400
Tssr63939 6 142186144 to 142186153 9 - TSS region transcription start site region 63939
Slco1a5 6 142234227 to 142322981 88754 - protein coding gene solute carrier organic anion transporter family, member 1a5
Gm25430 6 142238539 to 142238827 288 - unclassified non-coding RNA gene predicted gene, 25430
Tssr63940 6 142278846 to 142278855 9 - TSS region transcription start site region 63940
Tssr59473 6 142298419 to 142298435 16 + TSS region transcription start site region 59473
Iapp 6 142298425 to 142303820 5395 + protein coding gene islet amyloid polypeptide
Tssr59474 6 142303577 to 142303586 9 + TSS region transcription start site region 59474
Tssr59475 6 142314076 to 142314096 20 + TSS region transcription start site region 59475
Tssr63941 6 142322941 to 142322957 16 - TSS region transcription start site region 63941
Tssr63942 6 142322967 to 142322977 10 - TSS region transcription start site region 63942
Tssr63943 6 142322978 to 142323007 29 - TSS region transcription start site region 63943
Tssr63944 6 142323010 to 142323022 12 - TSS region transcription start site region 63944
Tssr63945 6 142323026 to 142323040 14 - TSS region transcription start site region 63945
Tssr63946 6 142323042 to 142323062 20 - TSS region transcription start site region 63946
D6Mit58 6 142323797 to 142323911 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 58
Wta2 6 142323797 to 142323911 114 QTL weight adult 2
Tssr63947 6 142338990 to 142338996 6 - TSS region transcription start site region 63947
Cpgi18132 6 142345538 to 142346052 514 CpG island CpG island 18132
Tssr59476 6 142345648 to 142345693 45 + TSS region transcription start site region 59476
Pyroxd1 6 142345654 to 142363257 17603 + protein coding gene pyridine nucleotide-disulphide oxidoreductase domain 1
Tssr59477 6 142345701 to 142345712 11 + TSS region transcription start site region 59477
Recql 6 142350342 to 142387087 36745 - protein coding gene RecQ protein-like
Cpgi18133 6 142386750 to 142387905 1155 CpG island CpG island 18133
Tssr63948 6 142386987 to 142387002 15 - TSS region transcription start site region 63948
Tssr63949 6 142387035 to 142387092 57 - TSS region transcription start site region 63949
Tssr59478 6 142387215 to 142387269 54 + TSS region transcription start site region 59478
Golt1b 6 142387221 to 142403858 16637 + protein coding gene golgi transport 1B
Tssr59479 6 142387271 to 142387276 5 + TSS region transcription start site region 59479
Tssr59480 6 142387277 to 142387291 14 + TSS region transcription start site region 59480
Tssr59481 6 142402088 to 142402094 6 + TSS region transcription start site region 59481
Tssr59482 6 142405079 to 142405080 1 + TSS region transcription start site region 59482
Tssr59483 6 142413376 to 142413391 15 + TSS region transcription start site region 59483
Spx 6 142413441 to 142419730 6289 + protein coding gene spexin hormone
Cpgi18134 6 142414485 to 142414917 432 CpG island CpG island 18134
Gys2 6 142422613 to 142473109 50496 - protein coding gene glycogen synthase 2
Tssr63950 6 142472798 to 142472805 7 - TSS region transcription start site region 63950
Tssr63951 6 142472813 to 142472840 27 - TSS region transcription start site region 63951
Tssr63952 6 142472844 to 142472882 38 - TSS region transcription start site region 63952
Tssr63953 6 142472897 to 142472916 19 - TSS region transcription start site region 63953
Tssr63954 6 142472960 to 142472985 25 - TSS region transcription start site region 63954
Tssr63955 6 142472989 to 142472997 8 - TSS region transcription start site region 63955
Tssr63956 6 142473075 to 142473115 40 - TSS region transcription start site region 63956
Ldhb 6 142490249 to 142507957 17708 - protein coding gene lactate dehydrogenase B
Cpgi18135 6 142507079 to 142508236 1157 CpG island CpG island 18135
Tssr63957 6 142507910 to 142507962 52 - TSS region transcription start site region 63957
Gm38919 6 142518187 to 142519531 1344 + lncRNA gene predicted gene, 38919
Gm46979 6 142521180 to 142531477 10297 + lncRNA gene predicted gene, 46979
D6Mit60 6 142523603 to 142523741 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 60
Tssr59484 6 142537167 to 142537172 5 + TSS region transcription start site region 59484
Cpgi18136 6 142538447 to 142538846 399 CpG island CpG island 18136
Gm38920 6 142542552 to 142544718 2166 - lncRNA gene predicted gene, 38920
Kcnj8 6 142564837 to 142571614 6777 - protein coding gene potassium inwardly-rectifying channel, subfamily J, member 8
Cpgi18137 6 142565975 to 142566434 459 CpG island CpG island 18137
Cpgi18138 6 142570030 to 142570486 456 CpG island CpG island 18138
Cpgi18139 6 142571014 to 142571689 675 CpG island CpG island 18139
Tssr63958 6 142571291 to 142571297 6 - TSS region transcription start site region 63958
Tssr63959 6 142571303 to 142571353 50 - TSS region transcription start site region 63959
Tssr63960 6 142571498 to 142571527 29 - TSS region transcription start site region 63960
Tssr63961 6 142571625 to 142571631 6 - TSS region transcription start site region 63961
Abcc9 6 142587862 to 142702315 114453 - protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 9
Tssr63962 6 142589927 to 142589948 21 - TSS region transcription start site region 63962
5330439B14Rik 6 142614595 to 142626462 11867 + antisense lncRNA gene RIKEN cDNA 5330439B14 gene