Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:138861434-142171443

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176 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30583 6 138873581 to 138892752 19171 + lncRNA gene predicted gene, 30583
D6Mit59 6 138976326 to 138976494 168 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 59
Gm44267 6 139137127 to 139137511 384 + unclassified gene predicted gene, 44267
Gm44268 6 139140770 to 139140933 163 + unclassified gene predicted gene, 44268
Gm25434 6 139196065 to 139196231 166 - snoRNA gene predicted gene, 25434
4922502N22Rik 6 139315597 to 139322576 6979 - lincRNA gene RIKEN cDNA 4922502N22 gene
Tssr2048 6 139321956 to 139321959 3 + TSS region transcription start site region 2048
Rergl 6 139493182 to 139501909 8727 - protein coding gene RERG/RAS-like
Tssr63913 6 139501883 to 139501902 19 - TSS region transcription start site region 63913
Tssr63914 6 139501907 to 139501918 11 - TSS region transcription start site region 63914
Tssr63915 6 139501921 to 139501933 12 - TSS region transcription start site region 63915
4930404I20Rik 6 139555559 to 139557611 2052 - lincRNA gene RIKEN cDNA 4930404I20 gene
4930443G03Rik 6 139575924 to 139577205 1281 - unclassified gene RIKEN cDNA 4930443G03 gene
Tssr59403 6 139587198 to 139587230 32 + TSS region transcription start site region 59403
Tssr59404 6 139599477 to 139599501 24 + TSS region transcription start site region 59404
Pik3c2g 6 139614072 to 139969284 355212 + protein coding gene phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma
Tssr59405 6 139662684 to 139662696 12 + TSS region transcription start site region 59405
Gm37269 6 139776430 to 139778320 1890 + unclassified gene predicted gene, 37269
Gm43940 6 139830387 to 139830551 164 + unclassified gene predicted gene, 43940
Tssr59406 6 139841652 to 139841658 6 + TSS region transcription start site region 59406
Tssr59407 6 139896711 to 139896714 3 + TSS region transcription start site region 59407
Gm29930 6 139965545 to 139971786 6241 - lncRNA gene predicted gene, 29930
Plcz1 6 139989673 to 140041457 51784 - protein coding gene phospholipase C, zeta 1
Gm44112 6 140033161 to 140033532 371 - pseudogene predicted gene, 44112
Tssr63916 6 140041409 to 140041466 57 - TSS region transcription start site region 63916
Tssr63917 6 140041473 to 140041476 3 - TSS region transcription start site region 63917
Tssr59408 6 140041519 to 140041530 11 + TSS region transcription start site region 59408
Capza3 6 140041525 to 140042789 1264 + protein coding gene capping protein (actin filament) muscle Z-line, alpha 3
Tssr59409 6 140041534 to 140041537 3 + TSS region transcription start site region 59409
Tssr59410 6 140041549 to 140041562 13 + TSS region transcription start site region 59410
Gm45959 6 140046012 to 140069807 23795 - lncRNA gene predicted gene, 45959
D6Dcr26 6 140054282 to 140054379 97 DNA segment DNA Segment, Chr 6, Derry C. Roopenian 26
Gm44156 6 140056401 to 140057589 1188 - pseudogene predicted gene, 44156
Gm44155 6 140057583 to 140057994 411 + pseudogene predicted gene, 44155
Gm44158 6 140069994 to 140070498 504 - pseudogene predicted gene, 44158
Gm30056 6 140092113 to 140101197 9084 - lncRNA gene predicted gene, 30056
Tssr63918 6 140101134 to 140101149 15 - TSS region transcription start site region 63918
Tssr63919 6 140101153 to 140101160 7 - TSS region transcription start site region 63919
Tssr63920 6 140101163 to 140101172 9 - TSS region transcription start site region 63920
Gm44159 6 140132067 to 140132508 441 + pseudogene predicted gene, 44159
Cpgi18123 6 140143880 to 140144109 229 CpG island CpG island 18123
Gm24174 6 140166535 to 140166645 110 - rRNA gene predicted gene, 24174
D6Mit292.2 6 140189684 to 140189794 110 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 292.2
D6Mit292 6 140189764 to 140189885 121 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 292
D6Mit292.1 6 140189880 to 140189988 108 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 292.1
Gm38917 6 140272410 to 140285735 13325 - lncRNA gene predicted gene, 38917
Gm3961 6 140295463 to 140296456 993 - unclassified gene predicted gene 3961
Cpgi18124 6 140296009 to 140296384 375 CpG island CpG island 18124
1700102F20Rik 6 140309071 to 140309740 669 + unclassified gene RIKEN cDNA 1700102F20 gene
n-R5s168 6 140319630 to 140319733 103 + rRNA gene nuclear encoded rRNA 5S 168
Cpgi18125 6 140385792 to 140385980 188 CpG island CpG island 18125
Tssr63921 6 140398118 to 140398139 21 - TSS region transcription start site region 63921
Gm5051 6 140420171 to 140420655 484 + pseudogene predicted gene 5051
Cpgi18126 6 140423602 to 140425095 1493 CpG island CpG island 18126
Tssr59411 6 140423911 to 140423960 49 + TSS region transcription start site region 59411
Tssr59412 6 140424046 to 140424082 36 + TSS region transcription start site region 59412
Plekha5 6 140424054 to 140597110 173056 + protein coding gene pleckstrin homology domain containing, family A member 5
Tssr59413 6 140424086 to 140424138 52 + TSS region transcription start site region 59413
Tssr59414 6 140424154 to 140424166 12 + TSS region transcription start site region 59414
Tssr59415 6 140432962 to 140432984 22 + TSS region transcription start site region 59415
Tssr59416 6 140479776 to 140479788 12 + TSS region transcription start site region 59416
Tssr59417 6 140479805 to 140479824 19 + TSS region transcription start site region 59417
Tssr59418 6 140479825 to 140479836 11 + TSS region transcription start site region 59418
Tssr59419 6 140491024 to 140491046 22 + TSS region transcription start site region 59419
Tssr59420 6 140491064 to 140491073 9 + TSS region transcription start site region 59420
Cpgi18127 6 140491092 to 140491249 157 CpG island CpG island 18127
Tssr59421 6 140491116 to 140491127 11 + TSS region transcription start site region 59421
Tssr63922 6 140513698 to 140513702 4 - TSS region transcription start site region 63922
Tssr59422 6 140514916 to 140514950 34 + TSS region transcription start site region 59422
Tssr59423 6 140516434 to 140516443 9 + TSS region transcription start site region 59423
Tssr59424 6 140527013 to 140527018 5 + TSS region transcription start site region 59424
Tssr59425 6 140530960 to 140530964 4 + TSS region transcription start site region 59425
Gm25780 6 140530963 to 140531215 252 + unclassified non-coding RNA gene predicted gene, 25780
Tssr59426 6 140591607 to 140591617 10 + TSS region transcription start site region 59426
Tssr59427 6 140591627 to 140591641 14 + TSS region transcription start site region 59427
Tssr59428 6 140591644 to 140591662 18 + TSS region transcription start site region 59428
Tssr2049 6 140601688 to 140601693 5 + TSS region transcription start site region 2049
Tssr59429 6 140607498 to 140607521 23 + TSS region transcription start site region 59429
Tssr63923 6 140613927 to 140613933 6 - TSS region transcription start site region 63923
Gm44013 6 140620162 to 140622423 2261 - unclassified gene predicted gene, 44013
Tssr63924 6 140620587 to 140620607 20 - TSS region transcription start site region 63924
Tssr59430 6 140621046 to 140621055 9 + TSS region transcription start site region 59430
Tssr59431 6 140621088 to 140621108 20 + TSS region transcription start site region 59431
Tssr59432 6 140621115 to 140621146 31 + TSS region transcription start site region 59432
Tssr59433 6 140622607 to 140622627 20 + TSS region transcription start site region 59433
Tssr59434 6 140622640 to 140622659 19 + TSS region transcription start site region 59434
Aebp2 6 140622663 to 140678472 55809 + protein coding gene AE binding protein 2
Tssr59435 6 140622695 to 140622708 13 + TSS region transcription start site region 59435
Cpgi18128 6 140622911 to 140625077 2166 CpG island CpG island 18128
Tssr59436 6 140623476 to 140623615 139 + TSS region transcription start site region 59436
Tssr59437 6 140623646 to 140623715 69 + TSS region transcription start site region 59437
Tssr59438 6 140623831 to 140623861 30 + TSS region transcription start site region 59438
Tssr59439 6 140623898 to 140623911 13 + TSS region transcription start site region 59439
Tssr63925 6 140624659 to 140624666 7 - TSS region transcription start site region 63925
Tssr63926 6 140625412 to 140625416 4 - TSS region transcription start site region 63926
Tssr59440 6 140639983 to 140639987 4 + TSS region transcription start site region 59440
Tssr59441 6 140642208 to 140642223 15 + TSS region transcription start site region 59441
Tssr59442 6 140651083 to 140651117 34 + TSS region transcription start site region 59442
Gm38918 6 140669133 to 140672791 3658 - lncRNA gene predicted gene, 38918
Gm30215 6 140681748 to 140826797 145049 + lncRNA gene predicted gene, 30215
Cpgi18129 6 140702345 to 140702496 151 CpG island CpG island 18129
Tssr63927 6 140720190 to 140720200 10 - TSS region transcription start site region 63927
Gm11077 6 140729284 to 140756053 26769 + protein coding gene predicted gene 11077
Cpgi18130 6 140733621 to 140733827 206 CpG island CpG island 18130
Rpl38-ps2 6 140746960 to 140747172 212 - pseudogene ribosomal protein L38, pseudogene 2
Tssr63928 6 140747211 to 140747226 15 - TSS region transcription start site region 63928
Tssr59443 6 140758949 to 140758956 7 + TSS region transcription start site region 59443
Tssr59444 6 140776866 to 140776870 4 + TSS region transcription start site region 59444
Gm43925 6 140784499 to 140784704 205 - pseudogene predicted gene, 43925
Gm30524 6 140955609 to 141044134 88525 + lincRNA gene predicted gene, 30524
Gm43927 6 141008169 to 141008285 116 - pseudogene predicted gene, 43927
Tssr59445 6 141138026 to 141138037 11 + TSS region transcription start site region 59445
Gm7384 6 141138047 to 141138576 529 + pseudogene predicted gene 7384
Gm28523 6 141246920 to 141250009 3089 - antisense lncRNA gene predicted gene 28523
Tssr59446 6 141249161 to 141249175 14 + TSS region transcription start site region 59446
Pde3a 6 141249269 to 141506862 257593 + protein coding gene phosphodiesterase 3A, cGMP inhibited
Cpgi18131 6 141249405 to 141250608 1203 CpG island CpG island 18131
Tssr63929 6 141249814 to 141249895 81 - TSS region transcription start site region 63929
Tssr59447 6 141249984 to 141249998 14 + TSS region transcription start site region 59447
Tssr59448 6 141274954 to 141274972 18 + TSS region transcription start site region 59448
Tssr59449 6 141274975 to 141274991 16 + TSS region transcription start site region 59449
Tssr59450 6 141275009 to 141275025 16 + TSS region transcription start site region 59450
Tssr59451 6 141275083 to 141275117 34 + TSS region transcription start site region 59451
Tssr59452 6 141275327 to 141275340 13 + TSS region transcription start site region 59452
Tssr59453 6 141296976 to 141296981 5 + TSS region transcription start site region 59453
Gm10400 6 141340553 to 141344387 3834 + lncRNA gene predicted gene 10400
Tssr59454 6 141406779 to 141406790 11 + TSS region transcription start site region 59454
Gm10210 6 141430582 to 141433914 3332 unclassified gene predicted gene 10210
Gm43958 6 141442360 to 141445903 3543 + unclassified gene predicted gene, 43958
Tssr59455 6 141454741 to 141454745 4 + TSS region transcription start site region 59455
Slco1c1 6 141524377 to 141570177 45800 + protein coding gene solute carrier organic anion transporter family, member 1c1
Tssr59456 6 141524379 to 141524449 70 + TSS region transcription start site region 59456
Tssr59457 6 141524568 to 141524586 18 + TSS region transcription start site region 59457
Tssr59458 6 141524589 to 141524629 40 + TSS region transcription start site region 59458
Tssr59459 6 141524658 to 141524672 14 + TSS region transcription start site region 59459
Tssr63930 6 141601146 to 141601182 36 - TSS region transcription start site region 63930
Tssr59460 6 141629499 to 141629527 28 + TSS region transcription start site region 59460
Slco1b2 6 141629518 to 141686646 57128 + protein coding gene solute carrier organic anion transporter family, member 1b2
Del(6Slco1b2-Slco1a5)1Nki 6 141629518 to 142322981 693463 chromosomal deletion deletion, Chr 6, the Netherlands Cancer Institute 1
Tssr59461 6 141632417 to 141632432 15 + TSS region transcription start site region 59461
Tssr59462 6 141632600 to 141632611 11 + TSS region transcription start site region 59462
D6Mit112 6 141632908 to 141633025 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 112
Tssr59463 6 141644910 to 141644917 7 + TSS region transcription start site region 59463
Tssr59464 6 141671879 to 141671889 10 + TSS region transcription start site region 59464
Tssr59465 6 141683228 to 141683239 11 + TSS region transcription start site region 59465
Tssr59466 6 141685758 to 141685769 11 + TSS region transcription start site region 59466
Gm5724 6 141708118 to 141773810 65692 - protein coding gene predicted gene 5724
Gm23069 6 141714781 to 141715091 310 - unclassified non-coding RNA gene predicted gene, 23069
Tssr63931 6 141778087 to 141778098 11 - TSS region transcription start site region 63931
Tssr63932 6 141778101 to 141778124 23 - TSS region transcription start site region 63932
Slco1a4 6 141805440 to 141856199 50759 - protein coding gene solute carrier organic anion transporter family, member 1a4
Tssr63933 6 141855524 to 141855570 46 - TSS region transcription start site region 63933
Tssr2050 6 141856184 to 141856191 7 - TSS region transcription start site region 2050
Tssr63934 6 141856192 to 141856234 42 - TSS region transcription start site region 63934
Tssr59467 6 141866343 to 141866356 13 + TSS region transcription start site region 59467
Tssr59468 6 141866358 to 141866365 7 + TSS region transcription start site region 59468
Gm30784 6 141866358 to 141875220 8862 + lincRNA gene predicted gene, 30784
Tssr59469 6 141866382 to 141866389 7 + TSS region transcription start site region 59469
Tssr59470 6 141876048 to 141876050 2 + TSS region transcription start site region 59470
Gm30843 6 141876070 to 141909012 32942 + lncRNA gene predicted gene, 30843
Tssr59471 6 141881106 to 141881129 23 + TSS region transcription start site region 59471
Slco1a1 6 141907282 to 141946962 39680 - protein coding gene solute carrier organic anion transporter family, member 1a1
Gm22036 6 141915078 to 141915292 214 - unclassified non-coding RNA gene predicted gene, 22036
D6Mit136 6 141921077 to 141921210 133 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 136
Tssr63935 6 141946791 to 141946821 30 - TSS region transcription start site region 63935
Tssr63936 6 141946827 to 141946836 9 - TSS region transcription start site region 63936
Tssr63937 6 141946960 to 141946964 4 - TSS region transcription start site region 63937
Gm6614 6 141971845 to 142011414 39569 - protein coding gene predicted gene 6614
Gm23775 6 141983247 to 141983495 248 - unclassified non-coding RNA gene predicted gene, 23775
Slco1a6 6 142085761 to 142186177 100416 - protein coding gene solute carrier organic anion transporter family, member 1a6
D6Mit293.1 6 142095977 to 142096094 117 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 293.1
D6Mit293 6 142096080 to 142096188 108 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 293
Gm18159 6 142110456 to 142111525 1069 + pseudogene predicted gene, 18159
Tssr63938 6 142161083 to 142161099 16 - TSS region transcription start site region 63938
Tssr59472 6 142161491 to 142161494 3 + TSS region transcription start site region 59472
Gm20400 6 142161493 to 142173796 12303 + antisense lncRNA gene predicted gene 20400