Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:135002924-138062939

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405 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pabr1 6 103777444 to 136423692 32646248 QTL plasma apolipoprotein B (human) regulator 1
Aaj3 6 104503360 to 136423692 31920332 QTL anxiety in A/J 3
Cmv4 6 127838217 to 136045152 8206935 QTL cytomegalovirus resistance 4
Ath38 6 128518894 to 136316178 7797284 QTL atherosclerosis 38
Cmv3 6 128834894 to 137439929 8605035 QTL cytomegalovirus resistance 3
Lvic3 6 134119450 to 136045152 1925702 QTL liver iron content 3
Cpgi18084 6 135011449 to 135011928 479 CpG island CpG island 18084
Tssr59277 6 135011609 to 135011640 31 + TSS region transcription start site region 59277
Ddx47 6 135011612 to 135023776 12164 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Tssr59278 6 135018159 to 135018170 11 + TSS region transcription start site region 59278
Cpgi18085 6 135040433 to 135040618 185 CpG island CpG island 18085
Cpgi18086 6 135065319 to 135065965 646 CpG island CpG island 18086
Gprc5a 6 135065662 to 135084709 19047 + protein coding gene G protein-coupled receptor, family C, group 5, member A
Tssr59279 6 135065666 to 135065682 16 + TSS region transcription start site region 59279
Tssr59280 6 135078671 to 135078709 38 + TSS region transcription start site region 59280
Tssr59281 6 135078711 to 135078769 58 + TSS region transcription start site region 59281
Cpgi18087 6 135078792 to 135079357 565 CpG island CpG island 18087
Tssr59282 6 135084070 to 135084083 13 + TSS region transcription start site region 59282
Tssr59283 6 135084172 to 135084195 23 + TSS region transcription start site region 59283
Gprc5d 6 135105991 to 135118283 12292 - protein coding gene G protein-coupled receptor, family C, group 5, member D
Tssr63745 6 135117982 to 135117985 3 - TSS region transcription start site region 63745
Tssr63746 6 135118240 to 135118252 12 - TSS region transcription start site region 63746
Gm29803 6 135134078 to 135134452 374 - pseudogene predicted gene, 29803
Hebp1 6 135137519 to 135168215 30696 - protein coding gene heme binding protein 1
Tssr63747 6 135138736 to 135138740 4 - TSS region transcription start site region 63747
Gm22881 6 135148648 to 135148781 133 + snoRNA gene predicted gene, 22881
Cpgi18088 6 135167766 to 135168421 655 CpG island CpG island 18088
Tssr63748 6 135168108 to 135168121 13 - TSS region transcription start site region 63748
Tssr63749 6 135168131 to 135168161 30 - TSS region transcription start site region 63749
Tssr63750 6 135168162 to 135168210 48 - TSS region transcription start site region 63750
Gm34391 6 135171199 to 135172105 906 - pseudogene predicted gene, 34391
Gm19434 6 135188480 to 135194959 6479 + antisense lncRNA gene predicted gene, 19434
Gm36533 6 135193701 to 135197962 4261 - lncRNA gene predicted gene, 36533
Tssr59284 6 135196880 to 135196906 26 + TSS region transcription start site region 59284
Cpgi18089 6 135197572 to 135198565 993 CpG island CpG island 18089
Tssr63751 6 135197918 to 135197963 45 - TSS region transcription start site region 63751
Fam234b 6 135197967 to 135236242 38275 + protein coding gene family with sequence similarity 234, member B
Tssr2037 6 135197981 to 135197992 11 + TSS region transcription start site region 2037
Tssr59285 6 135198010 to 135198023 13 + TSS region transcription start site region 59285
Tssr59286 6 135198034 to 135198062 28 + TSS region transcription start site region 59286
Tssr59287 6 135203440 to 135203444 4 + TSS region transcription start site region 59287
Tssr59288 6 135214318 to 135214330 12 + TSS region transcription start site region 59288
Gsg1 6 135237329 to 135254336 17007 - protein coding gene germ cell associated 1
Cpgi18090 6 135237489 to 135237726 237 CpG island CpG island 18090
Tssr63752 6 135237643 to 135237648 5 - TSS region transcription start site region 63752
Tssr63753 6 135241351 to 135241404 53 - TSS region transcription start site region 63753
Tssr59289 6 135242162 to 135242184 22 + TSS region transcription start site region 59289
Tssr63754 6 135247884 to 135247896 12 - TSS region transcription start site region 63754
Cpgi18091 6 135252606 to 135253011 405 CpG island CpG island 18091
Tssr63755 6 135253299 to 135253314 15 - TSS region transcription start site region 63755
Tssr63756 6 135254275 to 135254289 14 - TSS region transcription start site region 63756
Tssr63757 6 135254297 to 135254316 19 - TSS region transcription start site region 63757
Tssr63758 6 135254320 to 135254322 2 - TSS region transcription start site region 63758
Tssr63759 6 135254327 to 135254359 32 - TSS region transcription start site region 63759
n-TVgac1 6 135267775 to 135267848 73 - tRNA gene nuclear encoded tRNA valine 1 (anticodon GAC)
Gm36640 6 135279552 to 135313999 34447 + antisense lncRNA gene predicted gene, 36640
Tssr59290 6 135279654 to 135279670 16 + TSS region transcription start site region 59290
Cpgi18092 6 135296471 to 135296630 159 CpG island CpG island 18092
Pbp2 6 135309129 to 135310384 1255 - protein coding gene phosphatidylethanolamine binding protein 2
Cpgi18093 6 135309931 to 135310425 494 CpG island CpG island 18093
Tssr63760 6 135310349 to 135310370 21 - TSS region transcription start site region 63760
Tssr63761 6 135310374 to 135310385 11 - TSS region transcription start site region 63761
Gm36582 6 135311426 to 135319786 8360 - lncRNA gene predicted gene, 36582
Gm44274 6 135311456 to 135311711 255 - unclassified gene predicted gene, 44274
Gm44275 6 135312155 to 135319561 7406 - lincRNA gene predicted gene, 44275
D6Mit197 6 135316514 to 135316660 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 197
Tssr63762 6 135319555 to 135319567 12 - TSS region transcription start site region 63762
Cpgi18094 6 135323537 to 135323813 276 CpG island CpG island 18094
Tssr63763 6 135346407 to 135346430 23 - TSS region transcription start site region 63763
Tssr63764 6 135346451 to 135346473 22 - TSS region transcription start site region 63764
Tssr63765 6 135346497 to 135346511 14 - TSS region transcription start site region 63765
Dynlt1-ps1 6 135349408 to 135349749 341 - pseudogene dynein light chain Tctex-type 1, pseuodogene 1
Tssr63766 6 135349745 to 135349767 22 - TSS region transcription start site region 63766
Tssr63767 6 135349777 to 135349791 14 - TSS region transcription start site region 63767
Tssr59291 6 135362303 to 135362320 17 + TSS region transcription start site region 59291
Tssr2038 6 135362344 to 135362365 21 + TSS region transcription start site region 2038
Tssr59292 6 135362381 to 135362397 16 + TSS region transcription start site region 59292
Emp1 6 135362550 to 135383173 20623 + protein coding gene epithelial membrane protein 1
Tssr59293 6 135362639 to 135362653 14 + TSS region transcription start site region 59293
Tssr59294 6 135362662 to 135362696 34 + TSS region transcription start site region 59294
Tssr59295 6 135362704 to 135362760 56 + TSS region transcription start site region 59295
Tssr59296 6 135362823 to 135362845 22 + TSS region transcription start site region 59296
Tssr59297 6 135362946 to 135362961 15 + TSS region transcription start site region 59297
Tssr59298 6 135363004 to 135363022 18 + TSS region transcription start site region 59298
Tssr59299 6 135368836 to 135368869 33 + TSS region transcription start site region 59299
Tssr59300 6 135368883 to 135368903 20 + TSS region transcription start site region 59300
Tssr59301 6 135368963 to 135368993 30 + TSS region transcription start site region 59301
Tssr59302 6 135381962 to 135381975 13 + TSS region transcription start site region 59302
Tssr59303 6 135382054 to 135382071 17 + TSS region transcription start site region 59303
Tssr59304 6 135382504 to 135382525 21 + TSS region transcription start site region 59304
Cpgi18095 6 135526636 to 135527005 369 CpG island CpG island 18095
Gm25136 6 135584192 to 135584306 114 + snoRNA gene predicted gene, 25136
D6Mit1003 6 135628495 to 135628644 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1003
4930425L21Rik 6 135658913 to 135683391 24478 + lincRNA gene RIKEN cDNA 4930425L21 gene
Gm38911 6 135689093 to 135701569 12476 + lncRNA gene predicted gene, 38911
Tssr59305 6 135707411 to 135707422 11 + TSS region transcription start site region 59305
Tssr63768 6 135713441 to 135713472 31 - TSS region transcription start site region 63768
Tssr59306 6 135714006 to 135714023 17 + TSS region transcription start site region 59306
Tssr63769 6 135718688 to 135718720 32 - TSS region transcription start site region 63769
Tssr63770 6 135721757 to 135721768 11 - TSS region transcription start site region 63770
Tssr63771 6 135724742 to 135724749 7 - TSS region transcription start site region 63771
Tssr63772 6 135725568 to 135725580 12 - TSS region transcription start site region 63772
Grin2b 6 135729795 to 136173822 444027 - protein coding gene glutamate receptor, ionotropic, NMDA2B (epsilon 2)
Tssr63773 6 135729861 to 135729880 19 - TSS region transcription start site region 63773
Tssr63774 6 135731263 to 135731267 4 - TSS region transcription start site region 63774
Cpgi18096 6 135732358 to 135733433 1075 CpG island CpG island 18096
Tssr63775 6 135732762 to 135732767 5 - TSS region transcription start site region 63775
Gm14329 6 135732870 to 135744302 11432 + lincRNA gene predicted gene 14329
Tssr63776 6 135733587 to 135733601 14 - TSS region transcription start site region 63776
Tssr63777 6 135733607 to 135733616 9 - TSS region transcription start site region 63777
Tssr63778 6 135733665 to 135733672 7 - TSS region transcription start site region 63778
Gm22892 6 135740997 to 135741101 104 + miRNA gene predicted gene, 22892
Gm14330 6 135875505 to 135884792 9287 + antisense lncRNA gene predicted gene 14330
Cpgi18097 6 135907700 to 135907864 164 CpG island CpG island 18097
Tssr63779 6 136003415 to 136003426 11 - TSS region transcription start site region 63779
Tssr63780 6 136003454 to 136003462 8 - TSS region transcription start site region 63780
Tssr59307 6 136016763 to 136016767 4 + TSS region transcription start site region 59307
Cpgi18098 6 136043965 to 136044384 419 CpG island CpG island 18098
D6Mit301 6 136045041 to 136045152 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 301
Tssr2039 6 136120287 to 136120333 46 + TSS region transcription start site region 2039
Tssr63781 6 136171513 to 136171524 11 - TSS region transcription start site region 63781
Tssr63782 6 136171823 to 136171849 26 - TSS region transcription start site region 63782
Cpgi18099 6 136172091 to 136173014 923 CpG island CpG island 18099
Tssr63783 6 136172156 to 136172176 20 - TSS region transcription start site region 63783
Tssr63784 6 136172179 to 136172245 66 - TSS region transcription start site region 63784
Tssr63785 6 136172312 to 136172323 11 - TSS region transcription start site region 63785
Tssr63786 6 136172330 to 136172333 3 - TSS region transcription start site region 63786
Tssr63787 6 136172376 to 136172396 20 - TSS region transcription start site region 63787
Tssr63788 6 136172403 to 136172415 12 - TSS region transcription start site region 63788
Tssr63789 6 136172431 to 136172436 5 - TSS region transcription start site region 63789
Tssr63790 6 136172920 to 136172923 3 - TSS region transcription start site region 63790
Gm26653 6 136173061 to 136175664 2603 + antisense lncRNA gene predicted gene, 26653
Tssr63791 6 136173080 to 136173093 13 - TSS region transcription start site region 63791
Tssr63792 6 136173094 to 136173149 55 - TSS region transcription start site region 63792
Tssr63793 6 136173272 to 136173303 31 - TSS region transcription start site region 63793
Tssr63794 6 136173492 to 136173523 31 - TSS region transcription start site region 63794
Tssr63795 6 136173530 to 136173550 20 - TSS region transcription start site region 63795
Tssr63796 6 136173638 to 136173655 17 - TSS region transcription start site region 63796
Tssr2040 6 136234057 to 136234063 6 + TSS region transcription start site region 2040
Gm18224 6 136256032 to 136257216 1184 - pseudogene predicted gene, 18224
Gm26105 6 136281227 to 136281416 189 + snRNA gene predicted gene, 26105
D6Mit258 6 136315973 to 136316178 205 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 258
Gm8994 6 136327539 to 136329983 2444 + protein coding gene predicted gene 8994
Tssr59308 6 136328517 to 136328527 10 + TSS region transcription start site region 59308
Cpgi18100 6 136328542 to 136328781 239 CpG island CpG island 18100
Gm15476 6 136383728 to 136384918 1190 + pseudogene predicted gene 15476
Tssr59309 6 136398422 to 136398425 3 + TSS region transcription start site region 59309
Tubb3-ps1 6 136398435 to 136400135 1700 + pseudogene tubulin, beta 3 class III, pseudogene 1
Cpgi18101 6 136399207 to 136399551 344 CpG island CpG island 18101
E330021D16Rik 6 136400317 to 136415569 15252 - protein coding gene RIKEN cDNA E330021D16 gene
Cpgi18102 6 136401484 to 136401869 385 CpG island CpG island 18102
Tssr63797 6 136415567 to 136415572 5 - TSS region transcription start site region 63797
Tssr59310 6 136417811 to 136417816 5 + TSS region transcription start site region 59310
Gm25882 6 136417812 to 136417896 84 + snRNA gene predicted gene, 25882
D6Mit339 6 136423576 to 136423692 116 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 339
D6Mit339.2 6 136423667 to 136423781 114 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 339.2
Tabw2 6 136423692 to 46935985 -89487707 QTL tally ho associated body weight 2
Gm36844 6 136448887 to 136454720 5833 - lncRNA gene predicted gene, 36844
Tssr63798 6 136449311 to 136449330 19 - TSS region transcription start site region 63798
Tssr63799 6 136449346 to 136449357 11 - TSS region transcription start site region 63799
Tssr63800 6 136449450 to 136449463 13 - TSS region transcription start site region 63800
Gm36897 6 136463230 to 136471408 8178 + lncRNA gene predicted gene, 36897
Tssr59311 6 136463669 to 136463693 24 + TSS region transcription start site region 59311
Tssr59312 6 136470565 to 136470589 24 + TSS region transcription start site region 59312
Gm6728 6 136486125 to 136487186 1061 - pseudogene predicted gene 6728
Cpgi18103 6 136486985 to 136487228 243 CpG island CpG island 18103
Gm44131 6 136488319 to 136488712 393 + pseudogene predicted gene, 44131
Tssr59313 6 136488733 to 136488769 36 + TSS region transcription start site region 59313
Rpl36a-ps3 6 136488807 to 136489127 320 + pseudogene ribosomal protein L36A, pseudogene 3
Tssr63801 6 136497896 to 136497900 4 - TSS region transcription start site region 63801
Tssr63802 6 136499716 to 136499720 4 - TSS region transcription start site region 63802
Tssr59314 6 136501072 to 136501076 4 + TSS region transcription start site region 59314
Gm44140 6 136514976 to 136519031 4055 - bidirectional promoter lncRNA gene predicted gene, 44140
Tssr63803 6 136518498 to 136518501 3 - TSS region transcription start site region 63803
Cpgi18104 6 136518601 to 136519340 739 CpG island CpG island 18104
Tssr63804 6 136518761 to 136518772 11 - TSS region transcription start site region 63804
Tssr59315 6 136518786 to 136518810 24 + TSS region transcription start site region 59315
Atf7ip 6 136518807 to 136610850 92043 + protein coding gene activating transcription factor 7 interacting protein
Tssr59316 6 136518820 to 136518851 31 + TSS region transcription start site region 59316
Tssr59317 6 136518866 to 136518875 9 + TSS region transcription start site region 59317
Tssr63805 6 136519058 to 136519077 19 - TSS region transcription start site region 63805
Tssr59318 6 136520403 to 136520407 4 + TSS region transcription start site region 59318
Tssr63806 6 136532580 to 136532595 15 - TSS region transcription start site region 63806
Tssr59319 6 136532903 to 136532919 16 + TSS region transcription start site region 59319
Tssr59320 6 136532924 to 136532939 15 + TSS region transcription start site region 59320
Tssr59321 6 136532940 to 136532976 36 + TSS region transcription start site region 59321
Tssr59322 6 136551161 to 136551179 18 + TSS region transcription start site region 59322
Tssr59323 6 136553972 to 136553996 24 + TSS region transcription start site region 59323
5830415B17Rik 6 136554021 to 136555189 1168 unclassified gene RIKEN cDNA 5830415B17 gene
Tssr59324 6 136555058 to 136555075 17 + TSS region transcription start site region 59324
Tssr63807 6 136555586 to 136555593 7 - TSS region transcription start site region 63807
Tssr63808 6 136555613 to 136555626 13 - TSS region transcription start site region 63808
Tssr63809 6 136558718 to 136558736 18 - TSS region transcription start site region 63809
Tssr59325 6 136576332 to 136576336 4 + TSS region transcription start site region 59325
Tssr59326 6 136587533 to 136587555 22 + TSS region transcription start site region 59326
Tssr59327 6 136587561 to 136587582 21 + TSS region transcription start site region 59327
Plbd1 6 136612070 to 136661928 49858 - protein coding gene phospholipase B domain containing 1
Gm44401 6 136620632 to 136623006 2374 + unclassified gene predicted gene, 44401
Gm40409 6 136625542 to 136639918 14376 + lncRNA gene predicted gene, 40409
Tssr59328 6 136630196 to 136630245 49 + TSS region transcription start site region 59328