Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:134943836-135793869

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113 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lockd 6 134929092 to 134951718 22626 + lincRNA gene lncRNA downstream of Cdkn1b
Tssr59274 6 134948869 to 134948873 4 + TSS region transcription start site region 59274
Tssr59275 6 134981920 to 134981953 33 + TSS region transcription start site region 59275
Tssr59276 6 134981998 to 134982002 4 + TSS region transcription start site region 59276
Apold1 6 134982001 to 134986836 4835 + protein coding gene apolipoprotein L domain containing 1
Gm36428 6 134982136 to 134983587 1451 - lncRNA gene predicted gene, 36428
Cpgi18083 6 134983238 to 134984283 1045 CpG island CpG island 18083
Cpgi18084 6 135011449 to 135011928 479 CpG island CpG island 18084
Tssr59277 6 135011609 to 135011640 31 + TSS region transcription start site region 59277
Ddx47 6 135011612 to 135023776 12164 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Tssr59278 6 135018159 to 135018170 11 + TSS region transcription start site region 59278
Cpgi18085 6 135040433 to 135040618 185 CpG island CpG island 18085
Cpgi18086 6 135065319 to 135065965 646 CpG island CpG island 18086
Gprc5a 6 135065662 to 135084709 19047 + protein coding gene G protein-coupled receptor, family C, group 5, member A
Tssr59279 6 135065666 to 135065682 16 + TSS region transcription start site region 59279
Tssr59280 6 135078671 to 135078709 38 + TSS region transcription start site region 59280
Tssr59281 6 135078711 to 135078769 58 + TSS region transcription start site region 59281
Cpgi18087 6 135078792 to 135079357 565 CpG island CpG island 18087
Tssr59282 6 135084070 to 135084083 13 + TSS region transcription start site region 59282
Tssr59283 6 135084172 to 135084195 23 + TSS region transcription start site region 59283
Gprc5d 6 135105991 to 135118283 12292 - protein coding gene G protein-coupled receptor, family C, group 5, member D
Tssr63745 6 135117982 to 135117985 3 - TSS region transcription start site region 63745
Tssr63746 6 135118240 to 135118252 12 - TSS region transcription start site region 63746
Gm29803 6 135134078 to 135134452 374 - pseudogene predicted gene, 29803
Hebp1 6 135137519 to 135168215 30696 - protein coding gene heme binding protein 1
Tssr63747 6 135138736 to 135138740 4 - TSS region transcription start site region 63747
Gm22881 6 135148648 to 135148781 133 + snoRNA gene predicted gene, 22881
Cpgi18088 6 135167766 to 135168421 655 CpG island CpG island 18088
Tssr63748 6 135168108 to 135168121 13 - TSS region transcription start site region 63748
Tssr63749 6 135168131 to 135168161 30 - TSS region transcription start site region 63749
Tssr63750 6 135168162 to 135168210 48 - TSS region transcription start site region 63750
Gm34391 6 135171199 to 135172105 906 - pseudogene predicted gene, 34391
Gm19434 6 135188480 to 135194959 6479 + antisense lncRNA gene predicted gene, 19434
Gm36533 6 135193701 to 135197962 4261 - lncRNA gene predicted gene, 36533
Tssr59284 6 135196880 to 135196906 26 + TSS region transcription start site region 59284
Cpgi18089 6 135197572 to 135198565 993 CpG island CpG island 18089
Tssr63751 6 135197918 to 135197963 45 - TSS region transcription start site region 63751
Fam234b 6 135197967 to 135236242 38275 + protein coding gene family with sequence similarity 234, member B
Tssr2037 6 135197981 to 135197992 11 + TSS region transcription start site region 2037
Tssr59285 6 135198010 to 135198023 13 + TSS region transcription start site region 59285
Tssr59286 6 135198034 to 135198062 28 + TSS region transcription start site region 59286
Tssr59287 6 135203440 to 135203444 4 + TSS region transcription start site region 59287
Tssr59288 6 135214318 to 135214330 12 + TSS region transcription start site region 59288
Gsg1 6 135237329 to 135254336 17007 - protein coding gene germ cell associated 1
Cpgi18090 6 135237489 to 135237726 237 CpG island CpG island 18090
Tssr63752 6 135237643 to 135237648 5 - TSS region transcription start site region 63752
Tssr63753 6 135241351 to 135241404 53 - TSS region transcription start site region 63753
Tssr59289 6 135242162 to 135242184 22 + TSS region transcription start site region 59289
Tssr63754 6 135247884 to 135247896 12 - TSS region transcription start site region 63754
Cpgi18091 6 135252606 to 135253011 405 CpG island CpG island 18091
Tssr63755 6 135253299 to 135253314 15 - TSS region transcription start site region 63755
Tssr63756 6 135254275 to 135254289 14 - TSS region transcription start site region 63756
Tssr63757 6 135254297 to 135254316 19 - TSS region transcription start site region 63757
Tssr63758 6 135254320 to 135254322 2 - TSS region transcription start site region 63758
Tssr63759 6 135254327 to 135254359 32 - TSS region transcription start site region 63759
n-TVgac1 6 135267775 to 135267848 73 - tRNA gene nuclear encoded tRNA valine 1 (anticodon GAC)
Gm36640 6 135279552 to 135313999 34447 + antisense lncRNA gene predicted gene, 36640
Tssr59290 6 135279654 to 135279670 16 + TSS region transcription start site region 59290
Cpgi18092 6 135296471 to 135296630 159 CpG island CpG island 18092
Pbp2 6 135309129 to 135310384 1255 - protein coding gene phosphatidylethanolamine binding protein 2
Cpgi18093 6 135309931 to 135310425 494 CpG island CpG island 18093
Tssr63760 6 135310349 to 135310370 21 - TSS region transcription start site region 63760
Tssr63761 6 135310374 to 135310385 11 - TSS region transcription start site region 63761
Gm36582 6 135311426 to 135319786 8360 - lncRNA gene predicted gene, 36582
Gm44274 6 135311456 to 135311711 255 - unclassified gene predicted gene, 44274
Gm44275 6 135312155 to 135319561 7406 - lincRNA gene predicted gene, 44275
D6Mit197 6 135316514 to 135316660 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 197
Tssr63762 6 135319555 to 135319567 12 - TSS region transcription start site region 63762
Cpgi18094 6 135323537 to 135323813 276 CpG island CpG island 18094
Tssr63763 6 135346407 to 135346430 23 - TSS region transcription start site region 63763
Tssr63764 6 135346451 to 135346473 22 - TSS region transcription start site region 63764
Tssr63765 6 135346497 to 135346511 14 - TSS region transcription start site region 63765
Dynlt1-ps1 6 135349408 to 135349749 341 - pseudogene dynein light chain Tctex-type 1, pseuodogene 1
Tssr63766 6 135349745 to 135349767 22 - TSS region transcription start site region 63766
Tssr63767 6 135349777 to 135349791 14 - TSS region transcription start site region 63767
Tssr59291 6 135362303 to 135362320 17 + TSS region transcription start site region 59291
Tssr2038 6 135362344 to 135362365 21 + TSS region transcription start site region 2038
Tssr59292 6 135362381 to 135362397 16 + TSS region transcription start site region 59292
Emp1 6 135362550 to 135383173 20623 + protein coding gene epithelial membrane protein 1
Tssr59293 6 135362639 to 135362653 14 + TSS region transcription start site region 59293
Tssr59294 6 135362662 to 135362696 34 + TSS region transcription start site region 59294
Tssr59295 6 135362704 to 135362760 56 + TSS region transcription start site region 59295
Tssr59296 6 135362823 to 135362845 22 + TSS region transcription start site region 59296
Tssr59297 6 135362946 to 135362961 15 + TSS region transcription start site region 59297
Tssr59298 6 135363004 to 135363022 18 + TSS region transcription start site region 59298
Tssr59299 6 135368836 to 135368869 33 + TSS region transcription start site region 59299
Tssr59300 6 135368883 to 135368903 20 + TSS region transcription start site region 59300
Tssr59301 6 135368963 to 135368993 30 + TSS region transcription start site region 59301
Tssr59302 6 135381962 to 135381975 13 + TSS region transcription start site region 59302
Tssr59303 6 135382054 to 135382071 17 + TSS region transcription start site region 59303
Tssr59304 6 135382504 to 135382525 21 + TSS region transcription start site region 59304
Cpgi18095 6 135526636 to 135527005 369 CpG island CpG island 18095
Gm25136 6 135584192 to 135584306 114 + snoRNA gene predicted gene, 25136
D6Mit1003 6 135628495 to 135628644 149 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 1003
4930425L21Rik 6 135658913 to 135683391 24478 + lincRNA gene RIKEN cDNA 4930425L21 gene
Gm38911 6 135689093 to 135701569 12476 + lncRNA gene predicted gene, 38911
Tssr59305 6 135707411 to 135707422 11 + TSS region transcription start site region 59305
Tssr63768 6 135713441 to 135713472 31 - TSS region transcription start site region 63768
Tssr59306 6 135714006 to 135714023 17 + TSS region transcription start site region 59306
Tssr63769 6 135718688 to 135718720 32 - TSS region transcription start site region 63769
Tssr63770 6 135721757 to 135721768 11 - TSS region transcription start site region 63770
Tssr63771 6 135724742 to 135724749 7 - TSS region transcription start site region 63771
Tssr63772 6 135725568 to 135725580 12 - TSS region transcription start site region 63772
Grin2b 6 135729795 to 136173822 444027 - protein coding gene glutamate receptor, ionotropic, NMDA2B (epsilon 2)
Tssr63773 6 135729861 to 135729880 19 - TSS region transcription start site region 63773
Tssr63774 6 135731263 to 135731267 4 - TSS region transcription start site region 63774
Cpgi18096 6 135732358 to 135733433 1075 CpG island CpG island 18096
Tssr63775 6 135732762 to 135732767 5 - TSS region transcription start site region 63775
Gm14329 6 135732870 to 135744302 11432 + lincRNA gene predicted gene 14329
Tssr63776 6 135733587 to 135733601 14 - TSS region transcription start site region 63776
Tssr63777 6 135733607 to 135733616 9 - TSS region transcription start site region 63777
Tssr63778 6 135733665 to 135733672 7 - TSS region transcription start site region 63778
Gm22892 6 135740997 to 135741101 104 + miRNA gene predicted gene, 22892