Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:134237446-134797450

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Etv6 6 134035700 to 134270158 234458 + protein coding gene ets variant 6
Tssr63716 6 134243522 to 134243527 5 - TSS region transcription start site region 63716
1700051K13Rik 6 134245671 to 134246366 695 - unclassified gene RIKEN cDNA 1700051K13 gene
Gm17089 6 134246607 to 134248799 2192 - antisense lncRNA gene predicted gene 17089
Cpgi18070 6 134248292 to 134248835 543 CpG island CpG island 18070
Tssr63717 6 134248804 to 134248815 11 - TSS region transcription start site region 63717
Tssr63718 6 134262037 to 134262047 10 - TSS region transcription start site region 63718
Tssr59235 6 134262421 to 134262423 2 + TSS region transcription start site region 59235
4933406J09Rik 6 134308951 to 134403415 94464 - antisense lncRNA gene RIKEN cDNA 4933406J09 gene
Cpgi18071 6 134388638 to 134388906 268 CpG island CpG island 18071
Tssr59236 6 134396316 to 134396319 3 + TSS region transcription start site region 59236
Tssr59237 6 134396321 to 134396338 17 + TSS region transcription start site region 59237
Bcl2l14 6 134396329 to 134438724 42395 + protein coding gene BCL2-like 14 (apoptosis facilitator)
Gm44448 6 134404077 to 134424353 20276 - lincRNA gene predicted gene, 44448
Tssr59238 6 134414423 to 134414435 12 + TSS region transcription start site region 59238
Tssr59239 6 134414436 to 134414458 22 + TSS region transcription start site region 59239
Tssr59240 6 134414459 to 134414485 26 + TSS region transcription start site region 59240
Tssr59241 6 134414490 to 134414512 22 + TSS region transcription start site region 59241
Tssr59242 6 134431860 to 134431867 7 + TSS region transcription start site region 59242
Cpgi18072 6 134439479 to 134439668 189 CpG island CpG island 18072
Lrp6 6 134446476 to 134566965 120489 - protein coding gene low density lipoprotein receptor-related protein 6
Tssr59243 6 134451139 to 134451146 7 + TSS region transcription start site region 59243
Tssr63719 6 134517446 to 134517450 4 - TSS region transcription start site region 63719
Tssr63720 6 134539518 to 134539522 4 - TSS region transcription start site region 63720
Tssr63721 6 134558732 to 134558737 5 - TSS region transcription start site region 63721
D230041D01Rik 6 134559178 to 134563749 4571 unclassified gene RIKEN cDNA D230041D01 gene
Cpgi18073 6 134566048 to 134567464 1416 CpG island CpG island 18073
Tssr63722 6 134566801 to 134566812 11 - TSS region transcription start site region 63722
Tssr63723 6 134566817 to 134566845 28 - TSS region transcription start site region 63723
Tssr63724 6 134566861 to 134566875 14 - TSS region transcription start site region 63724
Tssr63725 6 134566884 to 134566908 24 - TSS region transcription start site region 63725
Tssr63726 6 134566916 to 134566995 79 - TSS region transcription start site region 63726
Tssr2035 6 134567231 to 134567249 18 - TSS region transcription start site region 2035
Gm38910 6 134605234 to 134607681 2447 - lincRNA gene predicted gene, 38910
Tssr59244 6 134605770 to 134605771 1 + TSS region transcription start site region 59244
Mansc1 6 134609207 to 134632488 23281 - protein coding gene MANSC domain containing 1
Gm43952 6 134624982 to 134625732 750 + unclassified gene predicted gene, 43952
Cpgi18074 6 134632112 to 134632789 677 CpG island CpG island 18074
Tssr63727 6 134632362 to 134632380 18 - TSS region transcription start site region 63727
Tssr63728 6 134632388 to 134632404 16 - TSS region transcription start site region 63728
Borcs5 6 134639512 to 134711184 71672 + protein coding gene BLOC-1 related complex subunit 5
Cpgi18075 6 134640825 to 134641579 754 CpG island CpG island 18075
Tssr59245 6 134640979 to 134641014 35 + TSS region transcription start site region 59245
Tssr59246 6 134641019 to 134641097 78 + TSS region transcription start site region 59246
Tssr59247 6 134641099 to 134641117 18 + TSS region transcription start site region 59247
Tssr63729 6 134645937 to 134645947 10 - TSS region transcription start site region 63729
Gm44017 6 134689859 to 134691302 1443 + sense intronic lncRNA gene predicted gene, 44017
Tssr59248 6 134696019 to 134696022 3 + TSS region transcription start site region 59248
Recrq9 6 134700000 to 73500000 -61200000 QTL recombination rate in male meiosis QTL 9
Dusp16 6 134715468 to 134792625 77157 - protein coding gene dual specificity phosphatase 16
Gm36328 6 134754246 to 134755192 946 + antisense lncRNA gene predicted gene, 36328
Tssr63730 6 134791327 to 134791339 12 - TSS region transcription start site region 63730
Tssr63731 6 134791342 to 134791367 25 - TSS region transcription start site region 63731
Tssr59249 6 134791480 to 134791500 20 + TSS region transcription start site region 59249
Cpgi18076 6 134791728 to 134793474 1746 CpG island CpG island 18076
Tssr63732 6 134792340 to 134792359 19 - TSS region transcription start site region 63732
Tssr63733 6 134792370 to 134792386 16 - TSS region transcription start site region 63733
Tssr63734 6 134792393 to 134792406 13 - TSS region transcription start site region 63734
Tssr63735 6 134792470 to 134792479 9 - TSS region transcription start site region 63735
Tssr63736 6 134792499 to 134792508 9 - TSS region transcription start site region 63736
Tssr63737 6 134792519 to 134792530 11 - TSS region transcription start site region 63737
Tssr63738 6 134792596 to 134792682 86 - TSS region transcription start site region 63738
Tssr63739 6 134792710 to 134792730 20 - TSS region transcription start site region 63739
1700055D16Rik 6 134795584 to 134820690 25106 + lncRNA gene RIKEN cDNA 1700055D16 gene