Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:133522001-136446836

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338 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pabr1 6 103777444 to 136423692 32646248 QTL plasma apolipoprotein B (human) regulator 1
Aaj3 6 104503360 to 136423692 31920332 QTL anxiety in A/J 3
Btts 6 125356646 to 134119623 8762977 QTL bitterness tasting
Cmv4 6 127838217 to 136045152 8206935 QTL cytomegalovirus resistance 4
Ath38 6 128518894 to 136316178 7797284 QTL atherosclerosis 38
Gm5885 6 133529189 to 133532762 3573 + pseudogene predicted gene 5885
Gm44245 6 133563937 to 133564168 231 - pseudogene predicted gene, 44245
Gm34224 6 133597285 to 133599305 2020 + pseudogene predicted gene, 34224
Gm34314 6 133617235 to 133619197 1962 - pseudogene predicted gene, 34314
Tssr59211 6 133699965 to 133699972 7 + TSS region transcription start site region 59211
Gm46987 6 133701186 to 133719651 18465 + lncRNA gene predicted gene, 46987
Gm44247 6 133706870 to 133707146 276 + unclassified gene predicted gene, 44247
Gm44252 6 133732049 to 133732378 329 - pseudogene predicted gene, 44252
Gm6375 6 133761445 to 133763062 1617 - pseudogene predicted gene 6375
Gm23375 6 133761688 to 133761770 82 - miRNA gene predicted gene, 23375
Gm5886 6 133763999 to 133767404 3405 - pseudogene predicted gene 5886
Tssr63707 6 133767409 to 133767414 5 - TSS region transcription start site region 63707
Kap 6 133849855 to 133853667 3812 - protein coding gene kidney androgen regulated protein
Tssr63708 6 133849876 to 133849884 8 - TSS region transcription start site region 63708
Tssr59212 6 133851928 to 133851948 20 + TSS region transcription start site region 59212
Tssr63709 6 133851973 to 133851976 3 - TSS region transcription start site region 63709
Tssr63710 6 133851977 to 133851989 12 - TSS region transcription start site region 63710
Tssr63711 6 133852007 to 133852019 12 - TSS region transcription start site region 63711
Tssr63712 6 133852089 to 133852090 1 - TSS region transcription start site region 63712
D6Uwa8 6 133852549 to 133852756 207 DNA segment DNA segment, Chr 6, University of Western Australia 8
D6Mit111 6 133852888 to 133853029 141 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 111
Skmw15 6 133852888 to 133853029 141 QTL skeletal muscle weight 15
Tssr63713 6 133853650 to 133853673 23 - TSS region transcription start site region 63713
Gm43968 6 133864054 to 133864720 666 + pseudogene predicted gene, 43968
Tssr63714 6 133864993 to 133865005 12 - TSS region transcription start site region 63714
Gm8956 6 133931587 to 133932409 822 - pseudogene predicted gene 8956
D6Mit290 6 133986464 to 133986588 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 290
Gm46977 6 134018144 to 134035302 17158 - protein coding gene predicted gene, 46977
Tssr2033 6 134020860 to 134020869 9 - TSS region transcription start site region 2033
Tssr2034 6 134034086 to 134034103 17 + TSS region transcription start site region 2034
Cpgi18069 6 134034870 to 134036340 1470 CpG island CpG island 18069
Tssr59213 6 134035016 to 134035038 22 + TSS region transcription start site region 59213
Tssr59214 6 134035639 to 134035689 50 + TSS region transcription start site region 59214
Tssr59215 6 134035691 to 134035717 26 + TSS region transcription start site region 59215
Etv6 6 134035700 to 134270158 234458 + protein coding gene ets variant 6
Tssr59216 6 134035772 to 134035783 11 + TSS region transcription start site region 59216
Tssr59217 6 134035821 to 134035897 76 + TSS region transcription start site region 59217
Tssr59218 6 134035953 to 134035973 20 + TSS region transcription start site region 59218
Tssr59219 6 134035975 to 134036011 36 + TSS region transcription start site region 59219
Tssr59220 6 134036024 to 134036034 10 + TSS region transcription start site region 59220
Tssr59221 6 134036070 to 134036104 34 + TSS region transcription start site region 59221
Tssr59222 6 134042265 to 134042274 9 + TSS region transcription start site region 59222
Tssr59223 6 134043831 to 134043865 34 + TSS region transcription start site region 59223
Tssr59224 6 134045449 to 134045472 23 + TSS region transcription start site region 59224
Tssr63715 6 134045629 to 134045652 23 - TSS region transcription start site region 63715
Tssr59225 6 134045903 to 134045932 29 + TSS region transcription start site region 59225
Tssr59226 6 134056157 to 134056166 9 + TSS region transcription start site region 59226
Gm43982 6 134073354 to 134075182 1828 + unclassified gene predicted gene, 43982
Tssr59227 6 134079611 to 134079615 4 + TSS region transcription start site region 59227
Tssr59228 6 134079658 to 134079671 13 + TSS region transcription start site region 59228
D6Mit110 6 134082986 to 134083123 137 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 110
Athsq2 6 134082986 to 134083123 137 QTL atherosclerosis susceptibility QTL 2
Gm43984 6 134084601 to 134087464 2863 + unclassified gene predicted gene, 43984
Tssr59229 6 134106263 to 134106275 12 + TSS region transcription start site region 59229
Gm46978 6 134111096 to 134114422 3326 + lncRNA gene predicted gene, 46978
Tssr59230 6 134115226 to 134115257 31 + TSS region transcription start site region 59230
D6Mit374a 6 134119450 to 134119623 173 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 374a
Lvic3 6 134119450 to 136045152 1925702 QTL liver iron content 3
D6Mit374b 6 134119484 to 134119623 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 374b
Tssr59231 6 134144659 to 134144660 1 + TSS region transcription start site region 59231
D6Ertd131e 6 134146786 to 134147021 235 DNA segment DNA segment, Chr 6, ERATO Doi 131, expressed
Tssr59232 6 134152274 to 134152278 4 + TSS region transcription start site region 59232
Gm17088 6 134168879 to 134172007 3128 - antisense lncRNA gene predicted gene 17088
D6Mit220.2 6 134184609 to 134184720 111 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 220.2
D6Mit220 6 134184701 to 134184819 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 220
Tssr59233 6 134190060 to 134190062 2 + TSS region transcription start site region 59233
Gm38908 6 134219321 to 134222858 3537 - lncRNA gene predicted gene, 38908
Tssr59234 6 134222935 to 134222940 5 + TSS region transcription start site region 59234
Tssr63716 6 134243522 to 134243527 5 - TSS region transcription start site region 63716
1700051K13Rik 6 134245671 to 134246366 695 - unclassified gene RIKEN cDNA 1700051K13 gene
Gm17089 6 134246607 to 134248799 2192 - antisense lncRNA gene predicted gene 17089
Cpgi18070 6 134248292 to 134248835 543 CpG island CpG island 18070
Tssr63717 6 134248804 to 134248815 11 - TSS region transcription start site region 63717
Tssr63718 6 134262037 to 134262047 10 - TSS region transcription start site region 63718
Tssr59235 6 134262421 to 134262423 2 + TSS region transcription start site region 59235
4933406J09Rik 6 134308951 to 134403415 94464 - antisense lncRNA gene RIKEN cDNA 4933406J09 gene
Cpgi18071 6 134388638 to 134388906 268 CpG island CpG island 18071
Tssr59236 6 134396316 to 134396319 3 + TSS region transcription start site region 59236
Tssr59237 6 134396321 to 134396338 17 + TSS region transcription start site region 59237
Bcl2l14 6 134396329 to 134438724 42395 + protein coding gene BCL2-like 14 (apoptosis facilitator)
Gm44448 6 134404077 to 134424353 20276 - lincRNA gene predicted gene, 44448
Tssr59238 6 134414423 to 134414435 12 + TSS region transcription start site region 59238
Tssr59239 6 134414436 to 134414458 22 + TSS region transcription start site region 59239
Tssr59240 6 134414459 to 134414485 26 + TSS region transcription start site region 59240
Tssr59241 6 134414490 to 134414512 22 + TSS region transcription start site region 59241
Tssr59242 6 134431860 to 134431867 7 + TSS region transcription start site region 59242
Cpgi18072 6 134439479 to 134439668 189 CpG island CpG island 18072
Lrp6 6 134446476 to 134566965 120489 - protein coding gene low density lipoprotein receptor-related protein 6
Tssr59243 6 134451139 to 134451146 7 + TSS region transcription start site region 59243
Tssr63719 6 134517446 to 134517450 4 - TSS region transcription start site region 63719
Tssr63720 6 134539518 to 134539522 4 - TSS region transcription start site region 63720
Tssr63721 6 134558732 to 134558737 5 - TSS region transcription start site region 63721
D230041D01Rik 6 134559178 to 134563749 4571 unclassified gene RIKEN cDNA D230041D01 gene
Cpgi18073 6 134566048 to 134567464 1416 CpG island CpG island 18073
Tssr63722 6 134566801 to 134566812 11 - TSS region transcription start site region 63722
Tssr63723 6 134566817 to 134566845 28 - TSS region transcription start site region 63723
Tssr63724 6 134566861 to 134566875 14 - TSS region transcription start site region 63724
Tssr63725 6 134566884 to 134566908 24 - TSS region transcription start site region 63725
Tssr63726 6 134566916 to 134566995 79 - TSS region transcription start site region 63726
Tssr2035 6 134567231 to 134567249 18 - TSS region transcription start site region 2035
Gm38910 6 134605234 to 134607681 2447 - lincRNA gene predicted gene, 38910
Tssr59244 6 134605770 to 134605771 1 + TSS region transcription start site region 59244
Mansc1 6 134609207 to 134632488 23281 - protein coding gene MANSC domain containing 1
Gm43952 6 134624982 to 134625732 750 + unclassified gene predicted gene, 43952
Cpgi18074 6 134632112 to 134632789 677 CpG island CpG island 18074
Tssr63727 6 134632362 to 134632380 18 - TSS region transcription start site region 63727
Tssr63728 6 134632388 to 134632404 16 - TSS region transcription start site region 63728
Borcs5 6 134639512 to 134711184 71672 + protein coding gene BLOC-1 related complex subunit 5
Cpgi18075 6 134640825 to 134641579 754 CpG island CpG island 18075
Tssr59245 6 134640979 to 134641014 35 + TSS region transcription start site region 59245
Tssr59246 6 134641019 to 134641097 78 + TSS region transcription start site region 59246
Tssr59247 6 134641099 to 134641117 18 + TSS region transcription start site region 59247
Tssr63729 6 134645937 to 134645947 10 - TSS region transcription start site region 63729
Gm44017 6 134689859 to 134691302 1443 + sense intronic lncRNA gene predicted gene, 44017
Tssr59248 6 134696019 to 134696022 3 + TSS region transcription start site region 59248
Recrq9 6 134700000 to 73500000 -61200000 QTL recombination rate in male meiosis QTL 9
Dusp16 6 134715468 to 134792625 77157 - protein coding gene dual specificity phosphatase 16
Gm36328 6 134754246 to 134755192 946 + antisense lncRNA gene predicted gene, 36328
Tssr63730 6 134791327 to 134791339 12 - TSS region transcription start site region 63730
Tssr63731 6 134791342 to 134791367 25 - TSS region transcription start site region 63731
Tssr59249 6 134791480 to 134791500 20 + TSS region transcription start site region 59249
Cpgi18076 6 134791728 to 134793474 1746 CpG island CpG island 18076
Tssr63732 6 134792340 to 134792359 19 - TSS region transcription start site region 63732
Tssr63733 6 134792370 to 134792386 16 - TSS region transcription start site region 63733
Tssr63734 6 134792393 to 134792406 13 - TSS region transcription start site region 63734
Tssr63735 6 134792470 to 134792479 9 - TSS region transcription start site region 63735
Tssr63736 6 134792499 to 134792508 9 - TSS region transcription start site region 63736
Tssr63737 6 134792519 to 134792530 11 - TSS region transcription start site region 63737
Tssr63738 6 134792596 to 134792682 86 - TSS region transcription start site region 63738
Tssr63739 6 134792710 to 134792730 20 - TSS region transcription start site region 63739
1700055D16Rik 6 134795584 to 134820690 25106 + lncRNA gene RIKEN cDNA 1700055D16 gene
Cpgi18077 6 134829929 to 134830643 714 CpG island CpG island 18077
Tssr59250 6 134830145 to 134830179 34 + TSS region transcription start site region 59250
Crebl2 6 134830154 to 134858931 28777 + protein coding gene cAMP responsive element binding protein-like 2
Tssr59251 6 134830216 to 134830270 54 + TSS region transcription start site region 59251
Tssr59252 6 134830319 to 134830337 18 + TSS region transcription start site region 59252
Tssr59253 6 134830764 to 134830774 10 + TSS region transcription start site region 59253
Tssr59254 6 134831032 to 134831036 4 + TSS region transcription start site region 59254
Gm44084 6 134835844 to 134836252 408 + pseudogene predicted gene, 44084
Tssr59255 6 134858382 to 134858386 4 + TSS region transcription start site region 59255
Gpr19 6 134869093 to 134898578 29485 - protein coding gene G protein-coupled receptor 19
Cpgi18078 6 134869677 to 134870260 583 CpG island CpG island 18078
Tssr63740 6 134887783 to 134887866 83 - TSS region transcription start site region 63740
Gm40407 6 134888220 to 134890702 2482 + lncRNA gene predicted gene, 40407
Gm44366 6 134889774 to 134892067 2293 - sense intronic lncRNA gene predicted gene, 44366
Cpgi18079 6 134897679 to 134898784 1105 CpG island CpG island 18079
Tssr63741 6 134897861 to 134897907 46 - TSS region transcription start site region 63741
2810454H06Rik 6 134897961 to 134900785 2824 + antisense lncRNA gene RIKEN cDNA 2810454H06 gene
Tssr59256 6 134897982 to 134898012 30 + TSS region transcription start site region 59256
Tssr59257 6 134898069 to 134898110 41 + TSS region transcription start site region 59257
Tssr63742 6 134898186 to 134898202 16 - TSS region transcription start site region 63742
Cpgi18080 6 134919751 to 134921480 1729 CpG island CpG island 18080
Tssr63743 6 134920287 to 134920296 9 - TSS region transcription start site region 63743
Cdkn1b 6 134920401 to 134925513 5112 + protein coding gene cyclin-dependent kinase inhibitor 1B
Tssr59258 6 134920407 to 134920434 27 + TSS region transcription start site region 59258
Tssr59259 6 134920510 to 134920523 13 + TSS region transcription start site region 59259
Tssr59260 6 134920651 to 134920675 24 + TSS region transcription start site region 59260
Tssr59261 6 134920688 to 134920704 16 + TSS region transcription start site region 59261
Tssr59262 6 134920712 to 134920726 14 + TSS region transcription start site region 59262
Tssr59263 6 134921189 to 134921208 19 + TSS region transcription start site region 59263
Tssr59264 6 134924543 to 134924567 24 + TSS region transcription start site region 59264
Tssr59265 6 134924646 to 134924666 20 + TSS region transcription start site region 59265
Tssr59266 6 134924882 to 134924926 44 + TSS region transcription start site region 59266
Tssr59267 6 134925134 to 134925138 4 + TSS region transcription start site region 59267
Tssr59268 6 134925303 to 134925308 5 + TSS region transcription start site region 59268
Cpgi18081 6 134926726 to 134927728 1002 CpG island CpG island 18081
Cpgi18082 6 134928059 to 134928867 808 CpG island CpG island 18082
Tssr63744 6 134928445 to 134928463 18 - TSS region transcription start site region 63744
Gm44238 6 134928992 to 134930112 1120 - lincRNA gene predicted gene, 44238
Tssr59269 6 134929089 to 134929103 14 + TSS region transcription start site region 59269
Lockd 6 134929092 to 134951718 22626 + lincRNA gene lncRNA downstream of Cdkn1b
Tssr59270 6 134929118 to 134929164 46 + TSS region transcription start site region 59270
Tssr2036 6 134935143 to 134935162 19 + TSS region transcription start site region 2036
Tssr59271 6 134936870 to 134936874 4 + TSS region transcription start site region 59271
Tssr59272 6 134937742 to 134937746 4 + TSS region transcription start site region 59272
Tssr59273 6 134939428 to 134939433 5 + TSS region transcription start site region 59273
Tssr59274 6 134948869 to 134948873 4 + TSS region transcription start site region 59274
Tssr59275 6 134981920 to 134981953 33 + TSS region transcription start site region 59275
Tssr59276 6 134981998 to 134982002 4 + TSS region transcription start site region 59276
Apold1 6 134982001 to 134986836 4835 + protein coding gene apolipoprotein L domain containing 1
Gm36428 6 134982136 to 134983587 1451 - lncRNA gene predicted gene, 36428
Cpgi18083 6 134983238 to 134984283 1045 CpG island CpG island 18083
Cpgi18084 6 135011449 to 135011928 479 CpG island CpG island 18084
Tssr59277 6 135011609 to 135011640 31 + TSS region transcription start site region 59277
Ddx47 6 135011612 to 135023776 12164 + protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Tssr59278 6 135018159 to 135018170 11 + TSS region transcription start site region 59278
Cpgi18085 6 135040433 to 135040618 185 CpG island CpG island 18085
Cpgi18086 6 135065319 to 135065965 646 CpG island CpG island 18086
Gprc5a 6 135065662 to 135084709 19047 + protein coding gene G protein-coupled receptor, family C, group 5, member A
Tssr59279 6 135065666 to 135065682 16 + TSS region transcription start site region 59279
Tssr59280 6 135078671 to 135078709 38 + TSS region transcription start site region 59280
Tssr59281 6 135078711 to 135078769 58 + TSS region transcription start site region 59281
Cpgi18087 6 135078792 to 135079357 565 CpG island CpG island 18087
Tssr59282 6 135084070 to 135084083 13 + TSS region transcription start site region 59282
Tssr59283 6 135084172 to 135084195 23 + TSS region transcription start site region 59283