Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:128248960-129048965

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240 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ath37 6 116664897 to 128519025 11854128 QTL atherosclerosis 37
Tead4 6 128227143 to 128300813 73670 - protein coding gene TEA domain family member 4
Tssr63419 6 128279130 to 128279137 7 - TSS region transcription start site region 63419
Gm21893 6 128294102 to 128294498 396 + pseudogene predicted gene, 21893
Tssr63420 6 128297089 to 128297107 18 - TSS region transcription start site region 63420
Cpgi18049 6 128299655 to 128301016 1361 CpG island CpG island 18049
Tssr63421 6 128300362 to 128300424 62 - TSS region transcription start site region 63421
Tssr63422 6 128300430 to 128300435 5 - TSS region transcription start site region 63422
Tssr63423 6 128300439 to 128300444 5 - TSS region transcription start site region 63423
Tssr63424 6 128300453 to 128300501 48 - TSS region transcription start site region 63424
Tssr63425 6 128300503 to 128300525 22 - TSS region transcription start site region 63425
Tssr63426 6 128300552 to 128300562 10 - TSS region transcription start site region 63426
Rpl18-ps2 6 128313357 to 128313923 566 + pseudogene ribosomal protein L18, pseudogene 2
Tulp3 6 128321161 to 128355851 34690 - protein coding gene tubby-like protein 3
Tssr63427 6 128340303 to 128340308 5 - TSS region transcription start site region 63427
Gm44190 6 128348754 to 128350154 1400 - sense intronic lncRNA gene predicted gene, 44190
D6Ertd90e 6 128354244 to 128354490 246 DNA segment DNA segment, Chr 6, ERATO Doi 90, expressed
Cpgi18050 6 128355177 to 128356216 1039 CpG island CpG island 18050
Tssr63428 6 128355797 to 128355824 27 - TSS region transcription start site region 63428
Tssr63429 6 128355826 to 128355856 30 - TSS region transcription start site region 63429
Gm26770 6 128356004 to 128358837 2833 + antisense lncRNA gene predicted gene, 26770
Rhno1 6 128357000 to 128362911 5911 - protein coding gene RAD9-HUS1-RAD1 interacting nuclear orphan 1
Tssr63430 6 128358197 to 128358202 5 - TSS region transcription start site region 63430
Gm44371 6 128359518 to 128359984 466 + unclassified gene predicted gene, 44371
Cpgi18051 6 128362271 to 128363501 1230 CpG island CpG island 18051
Tssr63431 6 128362502 to 128362523 21 - TSS region transcription start site region 63431
Tssr63432 6 128362667 to 128362686 19 - TSS region transcription start site region 63432
Tssr63433 6 128362692 to 128362724 32 - TSS region transcription start site region 63433
Tssr59058 6 128362754 to 128362774 20 + TSS region transcription start site region 59058
Tssr59059 6 128362794 to 128362803 9 + TSS region transcription start site region 59059
Tssr63434 6 128362861 to 128362926 65 - TSS region transcription start site region 63434
Tssr59060 6 128362919 to 128363058 139 + TSS region transcription start site region 59060
Foxm1 6 128362994 to 128375886 12892 + protein coding gene forkhead box M1
Tssr59061 6 128375464 to 128375512 48 + TSS region transcription start site region 59061
Gm44596 6 128375503 to 128407475 31972 + protein coding gene predicted gene 44596
Tex52 6 128375510 to 128385144 9634 + protein coding gene testis expressed 52
Gm43965 6 128376981 to 128377769 788 + unclassified gene predicted gene, 43965
Gm15862 6 128381584 to 128399740 18156 - antisense lncRNA gene predicted gene 15862
Nrip2 6 128397632 to 128409121 11489 + protein coding gene nuclear receptor interacting protein 2
Tssr59062 6 128399788 to 128399825 37 + TSS region transcription start site region 59062
Tssr59063 6 128399881 to 128399919 38 + TSS region transcription start site region 59063
Itfg2 6 128409444 to 128424931 15487 - protein coding gene integrin alpha FG-GAP repeat containing 2
Tssr63435 6 128413686 to 128413728 42 - TSS region transcription start site region 63435
Cpgi18052 6 128424434 to 128425058 624 CpG island CpG island 18052
Tssr59064 6 128424715 to 128424729 14 + TSS region transcription start site region 59064
Tssr63436 6 128424883 to 128424935 52 - TSS region transcription start site region 63436
Fkbp4 6 128430107 to 128438631 8524 - protein coding gene FK506 binding protein 4
Tssr63437 6 128430563 to 128430605 42 - TSS region transcription start site region 63437
Tssr63438 6 128434383 to 128434396 13 - TSS region transcription start site region 63438
Tssr63439 6 128434783 to 128434799 16 - TSS region transcription start site region 63439
Cpgi18053 6 128437572 to 128439331 1759 CpG island CpG island 18053
Tssr63440 6 128437704 to 128437730 26 - TSS region transcription start site region 63440
Tssr63441 6 128438515 to 128438551 36 - TSS region transcription start site region 63441
Tssr63442 6 128438560 to 128438571 11 - TSS region transcription start site region 63442
Tssr63443 6 128438576 to 128438588 12 - TSS region transcription start site region 63443
Tssr63444 6 128438593 to 128438606 13 - TSS region transcription start site region 63444
Tssr63445 6 128438618 to 128438636 18 - TSS region transcription start site region 63445
Tssr63446 6 128438638 to 128438667 29 - TSS region transcription start site region 63446
Tssr63447 6 128438673 to 128438698 25 - TSS region transcription start site region 63447
Gm10069 6 128438757 to 128503281 64524 + antisense lncRNA gene predicted gene 10069
Tssr59065 6 128438788 to 128438842 54 + TSS region transcription start site region 59065
Stambp-ps1 6 128447096 to 128448342 1246 - pseudogene STAM binding protein, pseudogene 1
Gm8719 6 128472855 to 128473388 533 - pseudogene predicted pseudogene 8719
Pzp 6 128483567 to 128526720 43153 - protein coding gene PZP, alpha-2-macroglobulin like
Tssr59066 6 128485593 to 128485605 12 + TSS region transcription start site region 59066
Tssr63448 6 128485611 to 128485628 17 - TSS region transcription start site region 63448
Tssr63449 6 128485644 to 128485667 23 - TSS region transcription start site region 63449
Tssr63450 6 128486148 to 128486167 19 - TSS region transcription start site region 63450
Tssr63451 6 128486178 to 128486197 19 - TSS region transcription start site region 63451
Tssr63452 6 128486918 to 128486953 35 - TSS region transcription start site region 63452
Tssr63453 6 128486962 to 128486985 23 - TSS region transcription start site region 63453
Tssr59067 6 128487422 to 128487437 15 + TSS region transcription start site region 59067
Tssr63454 6 128487434 to 128487445 11 - TSS region transcription start site region 63454
Tssr63455 6 128487451 to 128487481 30 - TSS region transcription start site region 63455
Tssr63456 6 128487482 to 128487506 24 - TSS region transcription start site region 63456
Tssr63457 6 128487523 to 128487547 24 - TSS region transcription start site region 63457
Tssr63458 6 128487921 to 128487931 10 - TSS region transcription start site region 63458
Tssr63459 6 128487936 to 128487959 23 - TSS region transcription start site region 63459
Tssr63460 6 128487964 to 128487982 18 - TSS region transcription start site region 63460
Tssr63461 6 128487994 to 128488009 15 - TSS region transcription start site region 63461
Tssr63462 6 128488019 to 128488031 12 - TSS region transcription start site region 63462
Tssr63463 6 128488080 to 128488101 21 - TSS region transcription start site region 63463
Tssr63464 6 128488105 to 128488117 12 - TSS region transcription start site region 63464
Tssr63465 6 128488991 to 128489001 10 - TSS region transcription start site region 63465
Tssr63466 6 128491548 to 128491569 21 - TSS region transcription start site region 63466
Tssr63467 6 128492187 to 128492196 9 - TSS region transcription start site region 63467
Tssr63468 6 128494561 to 128494580 19 - TSS region transcription start site region 63468
Tssr63469 6 128494767 to 128494778 11 - TSS region transcription start site region 63469
Tssr63470 6 128494815 to 128494832 17 - TSS region transcription start site region 63470
Tssr63471 6 128495260 to 128495268 8 - TSS region transcription start site region 63471
Tssr63472 6 128496749 to 128496761 12 - TSS region transcription start site region 63472
Tssr63473 6 128502200 to 128502207 7 - TSS region transcription start site region 63473
Tssr63474 6 128503526 to 128503539 13 - TSS region transcription start site region 63474
Tssr63475 6 128503547 to 128503570 23 - TSS region transcription start site region 63475
Tssr63476 6 128506814 to 128506828 14 - TSS region transcription start site region 63476
Tssr63477 6 128512218 to 128512229 11 - TSS region transcription start site region 63477
Tssr63478 6 128512231 to 128512242 11 - TSS region transcription start site region 63478
Tssr63479 6 128512334 to 128512346 12 - TSS region transcription start site region 63479
Tssr63480 6 128512377 to 128512388 11 - TSS region transcription start site region 63480
Tssr63481 6 128513782 to 128513814 32 - TSS region transcription start site region 63481
Tssr63482 6 128513834 to 128513845 11 - TSS region transcription start site region 63482
D6Mit61 6 128518894 to 128519025 131 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 61
Ath38 6 128518894 to 136316178 7797284 QTL atherosclerosis 38
Tssr63483 6 128519427 to 128519457 30 - TSS region transcription start site region 63483
Tssr63484 6 128519495 to 128519520 25 - TSS region transcription start site region 63484
Tssr63485 6 128521120 to 128521137 17 - TSS region transcription start site region 63485
Tssr63486 6 128521184 to 128521194 10 - TSS region transcription start site region 63486
Tssr63487 6 128522044 to 128522058 14 - TSS region transcription start site region 63487
Tssr63488 6 128522065 to 128522080 15 - TSS region transcription start site region 63488
Tssr63489 6 128522083 to 128522117 34 - TSS region transcription start site region 63489
Tssr63490 6 128522119 to 128522142 23 - TSS region transcription start site region 63490
Tssr59068 6 128523962 to 128524001 39 + TSS region transcription start site region 59068
Tssr63491 6 128524050 to 128524132 82 - TSS region transcription start site region 63491
Tssr63492 6 128525170 to 128525209 39 - TSS region transcription start site region 63492
Tssr63493 6 128525281 to 128525290 9 - TSS region transcription start site region 63493
Tssr63494 6 128526687 to 128526692 5 - TSS region transcription start site region 63494
Tssr63495 6 128526704 to 128526720 16 - TSS region transcription start site region 63495
Tssr2026 6 128526853 to 128526854 1 + TSS region transcription start site region 2026
Tssr63496 6 128526909 to 128526929 20 - TSS region transcription start site region 63496
Gm5318 6 128529320 to 128529725 405 - pseudogene predicted gene 5318
Gm8724 6 128530918 to 128531400 482 - pseudogene predicted pseudogene 8724
A2ml1 6 128539822 to 128581606 41784 - protein coding gene alpha-2-macroglobulin like 1
Tssr63497 6 128541041 to 128541053 12 - TSS region transcription start site region 63497
Tssr63498 6 128543312 to 128543321 9 - TSS region transcription start site region 63498
Tssr63499 6 128543337 to 128543376 39 - TSS region transcription start site region 63499
Tssr63500 6 128543379 to 128543436 57 - TSS region transcription start site region 63500
Cpgi18054 6 128566826 to 128567005 179 CpG island CpG island 18054
Tssr63501 6 128581597 to 128581612 15 - TSS region transcription start site region 63501
Tssr63502 6 128583867 to 128583868 1 - TSS region transcription start site region 63502
Gm44009 6 128585625 to 128588025 2400 - lincRNA gene predicted gene, 44009
Tssr63503 6 128600063 to 128600067 4 - TSS region transcription start site region 63503
Klrb1a 6 128609227 to 128622934 13707 - protein coding gene killer cell lectin-like receptor subfamily B member 1A
Tssr63504 6 128622831 to 128622847 16 - TSS region transcription start site region 63504
Tssr63505 6 128622873 to 128622895 22 - TSS region transcription start site region 63505
Gm44478 6 128642999 to 128643112 113 - pseudogene predicted gene, 44478
Gm5884 6 128644913 to 128646391 1478 + pseudogene predicted pseudogene 5884
Cpgi18055 6 128645665 to 128645848 183 CpG island CpG island 18055
Gm44420 6 128648576 to 128649065 489 - pseudogene predicted gene, 44420
Gm34617 6 128648735 to 128659122 10387 + lncRNA gene predicted gene, 34617
Tssr59069 6 128648872 to 128648886 14 + TSS region transcription start site region 59069
Tssr59070 6 128648960 to 128648965 5 + TSS region transcription start site region 59070
Clec2j 6 128654923 to 128657091 2168 - protein coding gene C-type lectin domain family 2, member J
Tssr59071 6 128657976 to 128657989 13 + TSS region transcription start site region 59071
Gm44216 6 128658110 to 128658266 156 + pseudogene predicted gene, 44216
Tssr59072 6 128662379 to 128662396 17 + TSS region transcription start site region 59072
Clec2h 6 128662385 to 128677374 14989 + protein coding gene C-type lectin domain family 2, member h
D6Mit257 6 128673302 to 128673425 123 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 257
Tssr59073 6 128674001 to 128674013 12 + TSS region transcription start site region 59073
Tssr59074 6 128674750 to 128674761 11 + TSS region transcription start site region 59074
Tssr59075 6 128676619 to 128676624 5 + TSS region transcription start site region 59075
Gm44215 6 128691073 to 128693783 2710 - unclassified gene predicted gene, 44215
Klrb1 6 128705836 to 128723059 17223 - protein coding gene killer cell lectin-like receptor subfamily B member 1
Tssr63506 6 128707768 to 128707777 9 - TSS region transcription start site region 63506
Tssr63507 6 128707780 to 128707788 8 - TSS region transcription start site region 63507
Tssr63508 6 128707800 to 128707813 13 - TSS region transcription start site region 63508
Gm43907 6 128744644 to 128744760 116 + pseudogene predicted gene, 43907
Cpgi18056 6 128760196 to 128761030 834 CpG island CpG island 18056
Cpgi18057 6 128763930 to 128764553 623 CpG island CpG island 18057
Klrb1c 6 128778485 to 128788641 10156 - protein coding gene killer cell lectin-like receptor subfamily B member 1C
Gm44511 6 128780285 to 128826315 46030 - protein coding gene predicted gene 44511
Tssr63509 6 128788497 to 128788534 37 - TSS region transcription start site region 63509
Tssr63510 6 128788538 to 128788559 21 - TSS region transcription start site region 63510
Tssr63511 6 128788566 to 128788574 8 - TSS region transcription start site region 63511
Tssr63512 6 128788598 to 128788614 16 - TSS region transcription start site region 63512
Gm34755 6 128798913 to 128805831 6918 + lncRNA gene predicted gene, 34755
Cpgi18058 6 128798986 to 128800007 1021 CpG island CpG island 18058
Cpgi18059 6 128802901 to 128803393 492 CpG island CpG island 18059
Tssr63513 6 128803106 to 128803110 4 - TSS region transcription start site region 63513
Klrb1b 6 128813706 to 128826331 12625 - protein coding gene killer cell lectin-like receptor subfamily B member 1B
Tssr63514 6 128826277 to 128826330 53 - TSS region transcription start site region 63514
D6Mit338.1 6 128834803 to 128834916 113 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 338.1
Cmv3 6 128834894 to 137439929 8605035 QTL cytomegalovirus resistance 3
D6Mit135 6 128834894 to 128835032 138 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 135
D6Mit338 6 128834931 to 128835048 117 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 338
Fl1n 6 128835032 to 45314059 -83520973 QTL fatty liver 1 in NSY
Cpgi18060 6 128838355 to 128839484 1129 CpG island CpG island 18060
Tssr59076 6 128838448 to 128838452 4 + TSS region transcription start site region 59076
Tssr63515 6 128839623 to 128839648 25 - TSS region transcription start site region 63515
D6Mit289 6 128839901 to 128840035 134 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 289
Cpgi18061 6 128842538 to 128843865 1327 CpG island CpG island 18061
Gm44066 6 128842558 to 128843171 613 - lincRNA gene predicted gene, 44066
Gm44067 6 128843786 to 128846959 3173 - lincRNA gene predicted gene, 44067
Gm26656 6 128843786 to 128846959 3173 + lincRNA gene predicted gene, 26656
BC035044 6 128849090 to 128891126 42036 - protein coding gene cDNA sequence BC035044
Gm34849 6 128857033 to 128860097 3064 + lncRNA gene predicted gene, 34849
Gm44078 6 128862549 to 128865194 2645 - unclassified gene predicted gene, 44078
Gm8774 6 128883852 to 128884540 688 + pseudogene predicted gene 8774
Tssr59077 6 128887586 to 128887592 6 + TSS region transcription start site region 59077
Clec2i 6 128887588 to 128898167 10579 + protein coding gene C-type lectin domain family 2, member i
Tssr63516 6 128890959 to 128890962 3 - TSS region transcription start site region 63516
Tssr63517 6 128890992 to 128891001 9 - TSS region transcription start site region 63517
Tssr63518 6 128891049 to 128891101 52 - TSS region transcription start site region 63518
Tssr63519 6 128891105 to 128891178 73 - TSS region transcription start site region 63519
Gm38905 6 128914114 to 128920059 5945 + lncRNA gene predicted gene, 38905
Tssr59078 6 128914258 to 128914273 15 + TSS region transcription start site region 59078
Gm44223 6 128919867 to 128919980 113 + pseudogene predicted gene, 44223
Gm27336 6 128931793 to 128931848 55 - miRNA gene predicted gene, 27336
Tssr63520 6 128933655 to 128933668 13 - TSS region transcription start site region 63520
Tssr63521 6 128934305 to 128934347 42 - TSS region transcription start site region 63521
Tssr59079 6 128934373 to 128934387 14 + TSS region transcription start site region 59079