Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:127478217-128198360

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Parp11 6 127446840 to 127494261 47421 + protein coding gene poly (ADP-ribose) polymerase family, member 11
Gm43633 6 127485793 to 127488122 2329 + unclassified gene predicted gene 43633
Tssr2025 6 127543152 to 127543153 1 + TSS region transcription start site region 2025
Cracr2a 6 127561064 to 127673733 112669 + protein coding gene calcium release activated channel regulator 2A
Cpgi18041 6 127561141 to 127561544 403 CpG island CpG island 18041
Tssr59036 6 127561207 to 127561241 34 + TSS region transcription start site region 59036
Tssr59037 6 127561312 to 127561343 31 + TSS region transcription start site region 59037
Tssr59038 6 127561347 to 127561369 22 + TSS region transcription start site region 59038
Tssr59039 6 127577937 to 127577938 1 + TSS region transcription start site region 59039
Tssr59040 6 127577945 to 127577957 12 + TSS region transcription start site region 59040
Tssr59041 6 127577963 to 127577979 16 + TSS region transcription start site region 59041
Tssr59042 6 127577981 to 127578000 19 + TSS region transcription start site region 59042
Tssr59043 6 127582123 to 127582186 63 + TSS region transcription start site region 59043
Tssr59044 6 127582201 to 127582212 11 + TSS region transcription start site region 59044
D6Mit335 6 127587651 to 127587777 126 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 335
D6Mit368 6 127639952 to 127640068 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 368
Gm43634 6 127644440 to 127657925 13485 + lincRNA gene predicted gene 43634
Prmt8 6 127689011 to 127769472 80461 - protein coding gene protein arginine N-methyltransferase 8
Gm38900 6 127723167 to 127726518 3351 - lncRNA gene predicted gene, 38900
Tssr63381 6 127732803 to 127732814 11 - TSS region transcription start site region 63381
Gm42739 6 127763748 to 127763973 225 + pseudogene predicted gene 42739
Cpgi18042 6 127766646 to 127767007 361 CpG island CpG island 18042
Cpgi18043 6 127767222 to 127769863 2641 CpG island CpG island 18043
Gm42738 6 127767542 to 127768905 1363 + antisense lncRNA gene predicted gene 42738
Tssr63382 6 127768775 to 127768790 15 - TSS region transcription start site region 63382
Tssr63383 6 127768968 to 127768993 25 - TSS region transcription start site region 63383
Tssr63384 6 127769112 to 127769135 23 - TSS region transcription start site region 63384
Tssr63385 6 127769142 to 127769164 22 - TSS region transcription start site region 63385
Tssr63386 6 127769174 to 127769196 22 - TSS region transcription start site region 63386
Tssr63387 6 127769306 to 127769364 58 - TSS region transcription start site region 63387
Tssr63388 6 127769427 to 127769456 29 - TSS region transcription start site region 63388
Tssr63389 6 127769700 to 127769708 8 - TSS region transcription start site region 63389
Tssr63390 6 127769721 to 127769731 10 - TSS region transcription start site region 63390
Gm42741 6 127772373 to 127774650 2277 - unclassified gene predicted gene 42741
4921513H07Rik 6 127776084 to 127778321 2237 - unclassified non-coding RNA gene RIKEN cDNA 4921513H07 gene
Gm40402 6 127779196 to 127813083 33887 + lncRNA gene predicted gene, 40402
Mir7233 6 127788084 to 127788143 59 - miRNA gene microRNA 7233
Tssr59045 6 127790350 to 127790355 5 + TSS region transcription start site region 59045
Tssr63391 6 127794666 to 127794677 11 - TSS region transcription start site region 63391
Tssr63392 6 127794716 to 127794733 17 - TSS region transcription start site region 63392
Tssr63393 6 127794773 to 127794802 29 - TSS region transcription start site region 63393
Tssr63394 6 127796274 to 127796296 22 - TSS region transcription start site region 63394
Tssr63395 6 127796299 to 127796330 31 - TSS region transcription start site region 63395
Tssr63396 6 127796332 to 127796337 5 - TSS region transcription start site region 63396
Tssr63397 6 127796348 to 127796364 16 - TSS region transcription start site region 63397
Tssr59046 6 127796417 to 127796436 19 + TSS region transcription start site region 59046
Tssr59047 6 127796442 to 127796453 11 + TSS region transcription start site region 59047
Tssr59048 6 127796455 to 127796476 21 + TSS region transcription start site region 59048
Tssr59049 6 127796482 to 127796491 9 + TSS region transcription start site region 59049
Tssr59050 6 127796496 to 127796500 4 + TSS region transcription start site region 59050
Gm38902 6 127805232 to 127822122 16890 - lncRNA gene predicted gene, 38902
Gm42811 6 127807951 to 127810718 2767 - unclassified gene predicted gene 42811
D6Mit52 6 127838217 to 127838360 143 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 52
Cypr5 6 127838217 to 127838360 143 QTL cytokine production 5
Cmv4 6 127838217 to 136045152 8206935 QTL cytomegalovirus resistance 4
Gm23098 6 127849221 to 127849519 298 + unclassified non-coding RNA gene predicted gene, 23098
Gm46976 6 127850668 to 127862385 11717 + lncRNA gene predicted gene, 46976
Gm40401 6 127863984 to 127873326 9342 - lncRNA gene predicted gene, 40401
D6Mit337 6 127873958 to 127874144 186 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 337
Gm38901 6 127876251 to 127877330 1079 - lincRNA gene predicted gene, 38901
Tssr59051 6 127887582 to 127887639 57 + TSS region transcription start site region 59051
Tspan11 6 127887599 to 127953031 65432 + protein coding gene tetraspanin 11
Cpgi18044 6 127887694 to 127888146 452 CpG island CpG island 18044
Tssr59052 6 127887708 to 127887757 49 + TSS region transcription start site region 59052
Tssr59053 6 127887763 to 127887777 14 + TSS region transcription start site region 59053
Tssr59054 6 127913710 to 127913732 22 + TSS region transcription start site region 59054
Tssr59055 6 127913827 to 127913838 11 + TSS region transcription start site region 59055
Tssr59056 6 127913851 to 127913866 15 + TSS region transcription start site region 59056
Gm38903 6 127928621 to 127937435 8814 + lncRNA gene predicted gene, 38903
D6Mit377 6 127929379 to 127929527 148 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-377
Gm15870 6 127934689 to 127944839 10150 - antisense lncRNA gene predicted gene 15870
Tssr59057 6 127940272 to 127940315 43 + TSS region transcription start site region 59057
Tspan9 6 127961396 to 128143594 182198 - protein coding gene tetraspanin 9
Tssr63398 6 128009237 to 128009241 4 - TSS region transcription start site region 63398
Cpgi18045 6 128011877 to 128012168 291 CpG island CpG island 18045
Tssr63399 6 128025690 to 128025713 23 - TSS region transcription start site region 63399
Tssr63400 6 128025740 to 128025787 47 - TSS region transcription start site region 63400
Tssr63401 6 128028914 to 128028919 5 - TSS region transcription start site region 63401
Cpgi18046 6 128034163 to 128035865 1702 CpG island CpG island 18046
Tssr63402 6 128035028 to 128035075 47 - TSS region transcription start site region 63402
Gm34416 6 128039043 to 128043597 4554 + lncRNA gene predicted gene, 34416
Gm26338 6 128094917 to 128095026 109 - miRNA gene predicted gene, 26338
Tssr63403 6 128124312 to 128124323 11 - TSS region transcription start site region 63403
Tssr63404 6 128124331 to 128124355 24 - TSS region transcription start site region 63404
Tssr63405 6 128124360 to 128124384 24 - TSS region transcription start site region 63405
Tssr63406 6 128126682 to 128126696 14 - TSS region transcription start site region 63406
Tssr63407 6 128138013 to 128138025 12 - TSS region transcription start site region 63407
Tssr63408 6 128138111 to 128138124 13 - TSS region transcription start site region 63408
Cpgi18047 6 128142974 to 128144159 1185 CpG island CpG island 18047
Tssr63409 6 128143525 to 128143594 69 - TSS region transcription start site region 63409
D6Mit194 6 128165485 to 128165578 93 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 194
Mcvq14 6 128165485 to 128165578 93 QTL mean corpuscular volume QTL 14
Gm44056 6 128165496 to 128166922 1426 - unclassified gene predicted gene, 44056
9330102E08Rik 6 128169704 to 128183803 14099 - lincRNA gene RIKEN cDNA 9330102E08 gene
Gm18609 6 128185365 to 128188784 3419 + pseudogene predicted gene, 18609
Gm10010 6 128187818 to 128200623 12805 - lincRNA gene predicted gene 10010