Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:127152919-129573058

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624 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ath37 6 116664897 to 128519025 11854128 QTL atherosclerosis 37
9330179D12Rik 6 127149389 to 127212411 63022 + antisense lncRNA gene RIKEN cDNA 9330179D12 gene
Cpgi18036 6 127152760 to 127152965 205 CpG island CpG island 18036
Tssr59023 6 127153259 to 127153263 4 + TSS region transcription start site region 59023
Cpgi18037 6 127153279 to 127153863 584 CpG island CpG island 18037
Tssr59024 6 127153642 to 127153652 10 + TSS region transcription start site region 59024
Cpgi18038 6 127154058 to 127155546 1488 CpG island CpG island 18038
Tssr63379 6 127154727 to 127154748 21 - TSS region transcription start site region 63379
Gm18995 6 127167575 to 127168094 519 + pseudogene predicted gene, 18995
Tpi-rs11 6 127183409 to 127183718 309 - pseudogene triosephosphate isomerase related sequence 11
Tssr59025 6 127233724 to 127233740 16 + TSS region transcription start site region 59025
Gm4968 6 127233762 to 127234619 857 + pseudogene predicted gene 4968
Gm43635 6 127251638 to 127254644 3006 - lincRNA gene predicted gene 43635
Gm7308 6 127282063 to 127282509 446 - pseudogene predicted pseudogene 7308
Gm38404 6 127296186 to 127307967 11781 - lincRNA gene predicted gene, 38404
Gm43636 6 127318341 to 127320575 2234 + unclassified gene predicted gene 43636
D6Mit133 6 127318511 to 127318621 110 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 133
Gm42458 6 127325489 to 127325857 368 - unclassified gene predicted gene 42458
Cpgi18039 6 127329974 to 127330889 915 CpG island CpG island 18039
Gm43631 6 127367947 to 127368479 532 - pseudogene predicted gene 43631
Gm34091 6 127411130 to 127411733 603 + pseudogene predicted gene, 34091
Tssr59026 6 127434427 to 127434439 12 + TSS region transcription start site region 59026
Tssr59027 6 127446792 to 127446803 11 + TSS region transcription start site region 59027
Tssr59028 6 127446819 to 127446872 53 + TSS region transcription start site region 59028
Parp11 6 127446840 to 127494261 47421 + protein coding gene poly (ADP-ribose) polymerase family, member 11
Tssr59029 6 127446875 to 127446888 13 + TSS region transcription start site region 59029
Gm34148 6 127447135 to 127448648 1513 - lncRNA gene predicted gene, 34148
Cpgi18040 6 127453361 to 127454055 694 CpG island CpG island 18040
Tssr59030 6 127453608 to 127453662 54 + TSS region transcription start site region 59030
Tssr59031 6 127453667 to 127453685 18 + TSS region transcription start site region 59031
Tssr59032 6 127453705 to 127453716 11 + TSS region transcription start site region 59032
Tssr59033 6 127455313 to 127455316 3 + TSS region transcription start site region 59033
Tssr59034 6 127457356 to 127457371 15 + TSS region transcription start site region 59034
Tssr63380 6 127458625 to 127458638 13 - TSS region transcription start site region 63380
Tssr59035 6 127474137 to 127474151 14 + TSS region transcription start site region 59035
Tssr2024 6 127474175 to 127474193 18 + TSS region transcription start site region 2024
Gm43633 6 127485793 to 127488122 2329 + unclassified gene predicted gene 43633
Tssr2025 6 127543152 to 127543153 1 + TSS region transcription start site region 2025
Cracr2a 6 127561064 to 127673733 112669 + protein coding gene calcium release activated channel regulator 2A
Cpgi18041 6 127561141 to 127561544 403 CpG island CpG island 18041
Tssr59036 6 127561207 to 127561241 34 + TSS region transcription start site region 59036
Tssr59037 6 127561312 to 127561343 31 + TSS region transcription start site region 59037
Tssr59038 6 127561347 to 127561369 22 + TSS region transcription start site region 59038
Tssr59039 6 127577937 to 127577938 1 + TSS region transcription start site region 59039
Tssr59040 6 127577945 to 127577957 12 + TSS region transcription start site region 59040
Tssr59041 6 127577963 to 127577979 16 + TSS region transcription start site region 59041
Tssr59042 6 127577981 to 127578000 19 + TSS region transcription start site region 59042
Tssr59043 6 127582123 to 127582186 63 + TSS region transcription start site region 59043
Tssr59044 6 127582201 to 127582212 11 + TSS region transcription start site region 59044
D6Mit335 6 127587651 to 127587777 126 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 335
D6Mit368 6 127639952 to 127640068 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 368
Gm43634 6 127644440 to 127657925 13485 + lincRNA gene predicted gene 43634
Prmt8 6 127689011 to 127769472 80461 - protein coding gene protein arginine N-methyltransferase 8
Gm38900 6 127723167 to 127726518 3351 - lncRNA gene predicted gene, 38900
Tssr63381 6 127732803 to 127732814 11 - TSS region transcription start site region 63381
Gm42739 6 127763748 to 127763973 225 + pseudogene predicted gene 42739
Cpgi18042 6 127766646 to 127767007 361 CpG island CpG island 18042
Cpgi18043 6 127767222 to 127769863 2641 CpG island CpG island 18043
Gm42738 6 127767542 to 127768905 1363 + antisense lncRNA gene predicted gene 42738
Tssr63382 6 127768775 to 127768790 15 - TSS region transcription start site region 63382
Tssr63383 6 127768968 to 127768993 25 - TSS region transcription start site region 63383
Tssr63384 6 127769112 to 127769135 23 - TSS region transcription start site region 63384
Tssr63385 6 127769142 to 127769164 22 - TSS region transcription start site region 63385
Tssr63386 6 127769174 to 127769196 22 - TSS region transcription start site region 63386
Tssr63387 6 127769306 to 127769364 58 - TSS region transcription start site region 63387
Tssr63388 6 127769427 to 127769456 29 - TSS region transcription start site region 63388
Tssr63389 6 127769700 to 127769708 8 - TSS region transcription start site region 63389
Tssr63390 6 127769721 to 127769731 10 - TSS region transcription start site region 63390
Gm42741 6 127772373 to 127774650 2277 - unclassified gene predicted gene 42741
4921513H07Rik 6 127776084 to 127778321 2237 - unclassified non-coding RNA gene RIKEN cDNA 4921513H07 gene
Gm40402 6 127779196 to 127813083 33887 + lncRNA gene predicted gene, 40402
Mir7233 6 127788084 to 127788143 59 - miRNA gene microRNA 7233
Tssr59045 6 127790350 to 127790355 5 + TSS region transcription start site region 59045
Tssr63391 6 127794666 to 127794677 11 - TSS region transcription start site region 63391
Tssr63392 6 127794716 to 127794733 17 - TSS region transcription start site region 63392
Tssr63393 6 127794773 to 127794802 29 - TSS region transcription start site region 63393
Tssr63394 6 127796274 to 127796296 22 - TSS region transcription start site region 63394
Tssr63395 6 127796299 to 127796330 31 - TSS region transcription start site region 63395
Tssr63396 6 127796332 to 127796337 5 - TSS region transcription start site region 63396
Tssr63397 6 127796348 to 127796364 16 - TSS region transcription start site region 63397
Tssr59046 6 127796417 to 127796436 19 + TSS region transcription start site region 59046
Tssr59047 6 127796442 to 127796453 11 + TSS region transcription start site region 59047
Tssr59048 6 127796455 to 127796476 21 + TSS region transcription start site region 59048
Tssr59049 6 127796482 to 127796491 9 + TSS region transcription start site region 59049
Tssr59050 6 127796496 to 127796500 4 + TSS region transcription start site region 59050
Gm38902 6 127805232 to 127822122 16890 - lncRNA gene predicted gene, 38902
Gm42811 6 127807951 to 127810718 2767 - unclassified gene predicted gene 42811
Cypr5 6 127838217 to 127838360 143 QTL cytokine production 5
Cmv4 6 127838217 to 136045152 8206935 QTL cytomegalovirus resistance 4
D6Mit52 6 127838217 to 127838360 143 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 52
Gm23098 6 127849221 to 127849519 298 + unclassified non-coding RNA gene predicted gene, 23098
Gm46976 6 127850668 to 127862385 11717 + lncRNA gene predicted gene, 46976
Gm40401 6 127863984 to 127873326 9342 - lncRNA gene predicted gene, 40401
D6Mit337 6 127873958 to 127874144 186 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 337
Gm38901 6 127876251 to 127877330 1079 - lincRNA gene predicted gene, 38901
Tssr59051 6 127887582 to 127887639 57 + TSS region transcription start site region 59051
Tspan11 6 127887599 to 127953031 65432 + protein coding gene tetraspanin 11
Cpgi18044 6 127887694 to 127888146 452 CpG island CpG island 18044
Tssr59052 6 127887708 to 127887757 49 + TSS region transcription start site region 59052
Tssr59053 6 127887763 to 127887777 14 + TSS region transcription start site region 59053
Tssr59054 6 127913710 to 127913732 22 + TSS region transcription start site region 59054
Tssr59055 6 127913827 to 127913838 11 + TSS region transcription start site region 59055
Tssr59056 6 127913851 to 127913866 15 + TSS region transcription start site region 59056
Gm38903 6 127928621 to 127937435 8814 + lncRNA gene predicted gene, 38903
D6Mit377 6 127929379 to 127929527 148 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-377
Gm15870 6 127934689 to 127944839 10150 - antisense lncRNA gene predicted gene 15870
Tssr59057 6 127940272 to 127940315 43 + TSS region transcription start site region 59057
Tspan9 6 127961396 to 128143594 182198 - protein coding gene tetraspanin 9
Tssr63398 6 128009237 to 128009241 4 - TSS region transcription start site region 63398
Cpgi18045 6 128011877 to 128012168 291 CpG island CpG island 18045
Tssr63399 6 128025690 to 128025713 23 - TSS region transcription start site region 63399
Tssr63400 6 128025740 to 128025787 47 - TSS region transcription start site region 63400
Tssr63401 6 128028914 to 128028919 5 - TSS region transcription start site region 63401
Cpgi18046 6 128034163 to 128035865 1702 CpG island CpG island 18046
Tssr63402 6 128035028 to 128035075 47 - TSS region transcription start site region 63402
Gm34416 6 128039043 to 128043597 4554 + lncRNA gene predicted gene, 34416
Gm26338 6 128094917 to 128095026 109 - miRNA gene predicted gene, 26338
Tssr63403 6 128124312 to 128124323 11 - TSS region transcription start site region 63403
Tssr63404 6 128124331 to 128124355 24 - TSS region transcription start site region 63404
Tssr63405 6 128124360 to 128124384 24 - TSS region transcription start site region 63405
Tssr63406 6 128126682 to 128126696 14 - TSS region transcription start site region 63406
Tssr63407 6 128138013 to 128138025 12 - TSS region transcription start site region 63407
Tssr63408 6 128138111 to 128138124 13 - TSS region transcription start site region 63408
Cpgi18047 6 128142974 to 128144159 1185 CpG island CpG island 18047
Tssr63409 6 128143525 to 128143594 69 - TSS region transcription start site region 63409
Mcvq14 6 128165485 to 128165578 93 QTL mean corpuscular volume QTL 14
D6Mit194 6 128165485 to 128165578 93 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 194
Gm44056 6 128165496 to 128166922 1426 - unclassified gene predicted gene, 44056
9330102E08Rik 6 128169704 to 128183803 14099 - lincRNA gene RIKEN cDNA 9330102E08 gene
Gm18609 6 128185365 to 128188784 3419 + pseudogene predicted gene, 18609
Gm10010 6 128187818 to 128200623 12805 - lincRNA gene predicted gene 10010
Cpgi18048 6 128200035 to 128201119 1084 CpG island CpG island 18048
Tssr63410 6 128200552 to 128200570 18 - TSS region transcription start site region 63410
Tssr63411 6 128200574 to 128200575 1 - TSS region transcription start site region 63411
Tssr63412 6 128200576 to 128200592 16 - TSS region transcription start site region 63412
Tssr63413 6 128200598 to 128200635 37 - TSS region transcription start site region 63413
Tssr63414 6 128200638 to 128200650 12 - TSS region transcription start site region 63414
Gm4691 6 128202150 to 128203276 1126 - pseudogene predicted gene 4691
Gm19065 6 128208271 to 128209289 1018 + pseudogene predicted gene, 19065
Gm8703 6 128213285 to 128214014 729 - pseudogene predicted gene 8703
Tssr63415 6 128215249 to 128215257 8 - TSS region transcription start site region 63415
Tead4 6 128227143 to 128300813 73670 - protein coding gene TEA domain family member 4
Tssr63416 6 128233844 to 128233851 7 - TSS region transcription start site region 63416
Tssr63417 6 128243478 to 128243503 25 - TSS region transcription start site region 63417
Tssr63418 6 128244429 to 128244433 4 - TSS region transcription start site region 63418
Tssr63419 6 128279130 to 128279137 7 - TSS region transcription start site region 63419
Gm21893 6 128294102 to 128294498 396 + pseudogene predicted gene, 21893
Tssr63420 6 128297089 to 128297107 18 - TSS region transcription start site region 63420
Cpgi18049 6 128299655 to 128301016 1361 CpG island CpG island 18049
Tssr63421 6 128300362 to 128300424 62 - TSS region transcription start site region 63421
Tssr63422 6 128300430 to 128300435 5 - TSS region transcription start site region 63422
Tssr63423 6 128300439 to 128300444 5 - TSS region transcription start site region 63423
Tssr63424 6 128300453 to 128300501 48 - TSS region transcription start site region 63424
Tssr63425 6 128300503 to 128300525 22 - TSS region transcription start site region 63425
Tssr63426 6 128300552 to 128300562 10 - TSS region transcription start site region 63426
Rpl18-ps2 6 128313357 to 128313923 566 + pseudogene ribosomal protein L18, pseudogene 2
Tulp3 6 128321161 to 128355851 34690 - protein coding gene tubby-like protein 3
Tssr63427 6 128340303 to 128340308 5 - TSS region transcription start site region 63427
Gm44190 6 128348754 to 128350154 1400 - sense intronic lncRNA gene predicted gene, 44190
D6Ertd90e 6 128354244 to 128354490 246 DNA segment DNA segment, Chr 6, ERATO Doi 90, expressed
Cpgi18050 6 128355177 to 128356216 1039 CpG island CpG island 18050
Tssr63428 6 128355797 to 128355824 27 - TSS region transcription start site region 63428
Tssr63429 6 128355826 to 128355856 30 - TSS region transcription start site region 63429
Gm26770 6 128356004 to 128358837 2833 + antisense lncRNA gene predicted gene, 26770
Rhno1 6 128357000 to 128362911 5911 - protein coding gene RAD9-HUS1-RAD1 interacting nuclear orphan 1
Tssr63430 6 128358197 to 128358202 5 - TSS region transcription start site region 63430
Gm44371 6 128359518 to 128359984 466 + unclassified gene predicted gene, 44371
Cpgi18051 6 128362271 to 128363501 1230 CpG island CpG island 18051
Tssr63431 6 128362502 to 128362523 21 - TSS region transcription start site region 63431
Tssr63432 6 128362667 to 128362686 19 - TSS region transcription start site region 63432
Tssr63433 6 128362692 to 128362724 32 - TSS region transcription start site region 63433
Tssr59058 6 128362754 to 128362774 20 + TSS region transcription start site region 59058
Tssr59059 6 128362794 to 128362803 9 + TSS region transcription start site region 59059
Tssr63434 6 128362861 to 128362926 65 - TSS region transcription start site region 63434
Tssr59060 6 128362919 to 128363058 139 + TSS region transcription start site region 59060
Foxm1 6 128362994 to 128375886 12892 + protein coding gene forkhead box M1
Tssr59061 6 128375464 to 128375512 48 + TSS region transcription start site region 59061
Gm44596 6 128375503 to 128407475 31972 + protein coding gene predicted gene 44596
Tex52 6 128375510 to 128385144 9634 + protein coding gene testis expressed 52
Gm43965 6 128376981 to 128377769 788 + unclassified gene predicted gene, 43965
Gm15862 6 128381584 to 128399740 18156 - antisense lncRNA gene predicted gene 15862
Nrip2 6 128397632 to 128409121 11489 + protein coding gene nuclear receptor interacting protein 2
Tssr59062 6 128399788 to 128399825 37 + TSS region transcription start site region 59062
Tssr59063 6 128399881 to 128399919 38 + TSS region transcription start site region 59063
Itfg2 6 128409444 to 128424931 15487 - protein coding gene integrin alpha FG-GAP repeat containing 2
Tssr63435 6 128413686 to 128413728 42 - TSS region transcription start site region 63435
Cpgi18052 6 128424434 to 128425058 624 CpG island CpG island 18052
Tssr59064 6 128424715 to 128424729 14 + TSS region transcription start site region 59064
Tssr63436 6 128424883 to 128424935 52 - TSS region transcription start site region 63436
Fkbp4 6 128430107 to 128438631 8524 - protein coding gene FK506 binding protein 4
Tssr63437 6 128430563 to 128430605 42 - TSS region transcription start site region 63437
Tssr63438 6 128434383 to 128434396 13 - TSS region transcription start site region 63438
Tssr63439 6 128434783 to 128434799 16 - TSS region transcription start site region 63439
Cpgi18053 6 128437572 to 128439331 1759 CpG island CpG island 18053
Tssr63440 6 128437704 to 128437730 26 - TSS region transcription start site region 63440
Tssr63441 6 128438515 to 128438551 36 - TSS region transcription start site region 63441
Tssr63442 6 128438560 to 128438571 11 - TSS region transcription start site region 63442
Tssr63443 6 128438576 to 128438588 12 - TSS region transcription start site region 63443
Tssr63444 6 128438593 to 128438606 13 - TSS region transcription start site region 63444
Tssr63445 6 128438618 to 128438636 18 - TSS region transcription start site region 63445