Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:127137963-128017979

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129 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccnd2 6 127125162 to 127152188 27026 - protein coding gene cyclin D2
Tssr63366 6 127139221 to 127139251 30 - TSS region transcription start site region 63366
Tssr63367 6 127142270 to 127142278 8 - TSS region transcription start site region 63367
Tssr63368 6 127148721 to 127148744 23 - TSS region transcription start site region 63368
Tssr63369 6 127148750 to 127148774 24 - TSS region transcription start site region 63369
Tssr63370 6 127148782 to 127148824 42 - TSS region transcription start site region 63370
9330179D12Rik 6 127149389 to 127212411 63022 + antisense lncRNA gene RIKEN cDNA 9330179D12 gene
Tssr59020 6 127149389 to 127149425 36 + TSS region transcription start site region 59020
Cpgi18033 6 127149409 to 127149561 152 CpG island CpG island 18033
Tssr63371 6 127149612 to 127149627 15 - TSS region transcription start site region 63371
Tssr63372 6 127149637 to 127149650 13 - TSS region transcription start site region 63372
Tssr63373 6 127149652 to 127149663 11 - TSS region transcription start site region 63373
Cpgi18034 6 127149813 to 127151080 1267 CpG island CpG island 18034
Tssr59021 6 127150236 to 127150243 7 + TSS region transcription start site region 59021
Tssr63374 6 127150663 to 127150676 13 - TSS region transcription start site region 63374
Tssr63375 6 127150996 to 127151014 18 - TSS region transcription start site region 63375
Tssr63376 6 127151032 to 127151039 7 - TSS region transcription start site region 63376
Tssr63377 6 127151044 to 127151055 11 - TSS region transcription start site region 63377
Cpgi18035 6 127151635 to 127152469 834 CpG island CpG island 18035
Tssr63378 6 127152458 to 127152474 16 - TSS region transcription start site region 63378
Tssr59022 6 127152569 to 127152574 5 + TSS region transcription start site region 59022
Cpgi18036 6 127152760 to 127152965 205 CpG island CpG island 18036
Tssr59023 6 127153259 to 127153263 4 + TSS region transcription start site region 59023
Cpgi18037 6 127153279 to 127153863 584 CpG island CpG island 18037
Tssr59024 6 127153642 to 127153652 10 + TSS region transcription start site region 59024
Cpgi18038 6 127154058 to 127155546 1488 CpG island CpG island 18038
Tssr63379 6 127154727 to 127154748 21 - TSS region transcription start site region 63379
Gm18995 6 127167575 to 127168094 519 + pseudogene predicted gene, 18995
Tpi-rs11 6 127183409 to 127183718 309 - pseudogene triosephosphate isomerase related sequence 11
Tssr59025 6 127233724 to 127233740 16 + TSS region transcription start site region 59025
Gm4968 6 127233762 to 127234619 857 + pseudogene predicted gene 4968
Gm43635 6 127251638 to 127254644 3006 - lincRNA gene predicted gene 43635
Gm7308 6 127282063 to 127282509 446 - pseudogene predicted pseudogene 7308
Gm38404 6 127296186 to 127307967 11781 - lincRNA gene predicted gene, 38404
Gm43636 6 127318341 to 127320575 2234 + unclassified gene predicted gene 43636
D6Mit133 6 127318511 to 127318621 110 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 133
Gm42458 6 127325489 to 127325857 368 - unclassified gene predicted gene 42458
Cpgi18039 6 127329974 to 127330889 915 CpG island CpG island 18039
Gm43631 6 127367947 to 127368479 532 - pseudogene predicted gene 43631
Gm34091 6 127411130 to 127411733 603 + pseudogene predicted gene, 34091
Tssr59026 6 127434427 to 127434439 12 + TSS region transcription start site region 59026
Tssr59027 6 127446792 to 127446803 11 + TSS region transcription start site region 59027
Tssr59028 6 127446819 to 127446872 53 + TSS region transcription start site region 59028
Parp11 6 127446840 to 127494261 47421 + protein coding gene poly (ADP-ribose) polymerase family, member 11
Tssr59029 6 127446875 to 127446888 13 + TSS region transcription start site region 59029
Gm34148 6 127447135 to 127448648 1513 - lncRNA gene predicted gene, 34148
Cpgi18040 6 127453361 to 127454055 694 CpG island CpG island 18040
Tssr59030 6 127453608 to 127453662 54 + TSS region transcription start site region 59030
Tssr59031 6 127453667 to 127453685 18 + TSS region transcription start site region 59031
Tssr59032 6 127453705 to 127453716 11 + TSS region transcription start site region 59032
Tssr59033 6 127455313 to 127455316 3 + TSS region transcription start site region 59033
Tssr59034 6 127457356 to 127457371 15 + TSS region transcription start site region 59034
Tssr63380 6 127458625 to 127458638 13 - TSS region transcription start site region 63380
Tssr59035 6 127474137 to 127474151 14 + TSS region transcription start site region 59035
Tssr2024 6 127474175 to 127474193 18 + TSS region transcription start site region 2024
Gm43633 6 127485793 to 127488122 2329 + unclassified gene predicted gene 43633
Tssr2025 6 127543152 to 127543153 1 + TSS region transcription start site region 2025
Cracr2a 6 127561064 to 127673733 112669 + protein coding gene calcium release activated channel regulator 2A
Cpgi18041 6 127561141 to 127561544 403 CpG island CpG island 18041
Tssr59036 6 127561207 to 127561241 34 + TSS region transcription start site region 59036
Tssr59037 6 127561312 to 127561343 31 + TSS region transcription start site region 59037
Tssr59038 6 127561347 to 127561369 22 + TSS region transcription start site region 59038
Tssr59039 6 127577937 to 127577938 1 + TSS region transcription start site region 59039
Tssr59040 6 127577945 to 127577957 12 + TSS region transcription start site region 59040
Tssr59041 6 127577963 to 127577979 16 + TSS region transcription start site region 59041
Tssr59042 6 127577981 to 127578000 19 + TSS region transcription start site region 59042
Tssr59043 6 127582123 to 127582186 63 + TSS region transcription start site region 59043
Tssr59044 6 127582201 to 127582212 11 + TSS region transcription start site region 59044
D6Mit335 6 127587651 to 127587777 126 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 335
D6Mit368 6 127639952 to 127640068 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 368
Gm43634 6 127644440 to 127657925 13485 + lincRNA gene predicted gene 43634
Prmt8 6 127689011 to 127769472 80461 - protein coding gene protein arginine N-methyltransferase 8
Gm38900 6 127723167 to 127726518 3351 - lncRNA gene predicted gene, 38900
Tssr63381 6 127732803 to 127732814 11 - TSS region transcription start site region 63381
Gm42739 6 127763748 to 127763973 225 + pseudogene predicted gene 42739
Cpgi18042 6 127766646 to 127767007 361 CpG island CpG island 18042
Cpgi18043 6 127767222 to 127769863 2641 CpG island CpG island 18043
Gm42738 6 127767542 to 127768905 1363 + antisense lncRNA gene predicted gene 42738
Tssr63382 6 127768775 to 127768790 15 - TSS region transcription start site region 63382
Tssr63383 6 127768968 to 127768993 25 - TSS region transcription start site region 63383
Tssr63384 6 127769112 to 127769135 23 - TSS region transcription start site region 63384
Tssr63385 6 127769142 to 127769164 22 - TSS region transcription start site region 63385
Tssr63386 6 127769174 to 127769196 22 - TSS region transcription start site region 63386
Tssr63387 6 127769306 to 127769364 58 - TSS region transcription start site region 63387
Tssr63388 6 127769427 to 127769456 29 - TSS region transcription start site region 63388
Tssr63389 6 127769700 to 127769708 8 - TSS region transcription start site region 63389
Tssr63390 6 127769721 to 127769731 10 - TSS region transcription start site region 63390
Gm42741 6 127772373 to 127774650 2277 - unclassified gene predicted gene 42741
4921513H07Rik 6 127776084 to 127778321 2237 - unclassified non-coding RNA gene RIKEN cDNA 4921513H07 gene
Gm40402 6 127779196 to 127813083 33887 + lncRNA gene predicted gene, 40402
Mir7233 6 127788084 to 127788143 59 - miRNA gene microRNA 7233
Tssr59045 6 127790350 to 127790355 5 + TSS region transcription start site region 59045
Tssr63391 6 127794666 to 127794677 11 - TSS region transcription start site region 63391
Tssr63392 6 127794716 to 127794733 17 - TSS region transcription start site region 63392
Tssr63393 6 127794773 to 127794802 29 - TSS region transcription start site region 63393
Tssr63394 6 127796274 to 127796296 22 - TSS region transcription start site region 63394
Tssr63395 6 127796299 to 127796330 31 - TSS region transcription start site region 63395
Tssr63396 6 127796332 to 127796337 5 - TSS region transcription start site region 63396
Tssr63397 6 127796348 to 127796364 16 - TSS region transcription start site region 63397
Tssr59046 6 127796417 to 127796436 19 + TSS region transcription start site region 59046
Tssr59047 6 127796442 to 127796453 11 + TSS region transcription start site region 59047
Tssr59048 6 127796455 to 127796476 21 + TSS region transcription start site region 59048
Tssr59049 6 127796482 to 127796491 9 + TSS region transcription start site region 59049
Tssr59050 6 127796496 to 127796500 4 + TSS region transcription start site region 59050
Gm38902 6 127805232 to 127822122 16890 - lncRNA gene predicted gene, 38902
Gm42811 6 127807951 to 127810718 2767 - unclassified gene predicted gene 42811
Cypr5 6 127838217 to 127838360 143 QTL cytokine production 5
Cmv4 6 127838217 to 136045152 8206935 QTL cytomegalovirus resistance 4
D6Mit52 6 127838217 to 127838360 143 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 52
Gm23098 6 127849221 to 127849519 298 + unclassified non-coding RNA gene predicted gene, 23098
Gm46976 6 127850668 to 127862385 11717 + lncRNA gene predicted gene, 46976
Gm40401 6 127863984 to 127873326 9342 - lncRNA gene predicted gene, 40401
D6Mit337 6 127873958 to 127874144 186 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 337
Gm38901 6 127876251 to 127877330 1079 - lincRNA gene predicted gene, 38901
Tssr59051 6 127887582 to 127887639 57 + TSS region transcription start site region 59051
Tspan11 6 127887599 to 127953031 65432 + protein coding gene tetraspanin 11
Cpgi18044 6 127887694 to 127888146 452 CpG island CpG island 18044
Tssr59052 6 127887708 to 127887757 49 + TSS region transcription start site region 59052
Tssr59053 6 127887763 to 127887777 14 + TSS region transcription start site region 59053
Tssr59054 6 127913710 to 127913732 22 + TSS region transcription start site region 59054
Tssr59055 6 127913827 to 127913838 11 + TSS region transcription start site region 59055
Tssr59056 6 127913851 to 127913866 15 + TSS region transcription start site region 59056
Gm38903 6 127928621 to 127937435 8814 + lncRNA gene predicted gene, 38903
D6Mit377 6 127929379 to 127929527 148 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology-377
Gm15870 6 127934689 to 127944839 10150 - antisense lncRNA gene predicted gene 15870
Tssr59057 6 127940272 to 127940315 43 + TSS region transcription start site region 59057
Tspan9 6 127961396 to 128143594 182198 - protein coding gene tetraspanin 9
Tssr63398 6 128009237 to 128009241 4 - TSS region transcription start site region 63398
Cpgi18045 6 128011877 to 128012168 291 CpG island CpG island 18045