Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:126840801-127410818

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc3 6 104503360 to 127042975 22539615 QTL susceptibility to lung cancer 3
Ndufa9 6 126821863 to 126849144 27281 - protein coding gene NADH:ubiquinone oxidoreductase subunit A9
Tssr63345 6 126840841 to 126840845 4 - TSS region transcription start site region 63345
Cpgi18027 6 126848658 to 126849241 583 CpG island CpG island 18027
Tssr63346 6 126849109 to 126849141 32 - TSS region transcription start site region 63346
Tssr63347 6 126849147 to 126849149 2 - TSS region transcription start site region 63347
Tssr59010 6 126853091 to 126853116 25 + TSS region transcription start site region 59010
Akap3 6 126853098 to 126874308 21210 + protein coding gene A kinase (PRKA) anchor protein 3
Tssr2023 6 126853123 to 126853128 5 + TSS region transcription start site region 2023
Tssr59011 6 126853139 to 126853154 15 + TSS region transcription start site region 59011
Tssr63348 6 126854249 to 126854269 20 - TSS region transcription start site region 63348
Tssr59012 6 126854372 to 126854383 11 + TSS region transcription start site region 59012
Tssr59013 6 126854398 to 126854403 5 + TSS region transcription start site region 59013
Dyrk4 6 126876020 to 126921839 45819 - protein coding gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4
Tssr63349 6 126877297 to 126877330 33 - TSS region transcription start site region 63349
Tssr63350 6 126921791 to 126921801 10 - TSS region transcription start site region 63350
Tssr63351 6 126921804 to 126921827 23 - TSS region transcription start site region 63351
Tssr59014 6 126921920 to 126921958 38 + TSS region transcription start site region 59014
Rad51ap1 6 126923415 to 126939701 16286 - protein coding gene RAD51 associated protein 1
Gm17808 6 126931688 to 126932581 893 + pseudogene predicted gene, 17808
Cpgi18028 6 126939035 to 126939803 768 CpG island CpG island 18028
Tssr63352 6 126939524 to 126939604 80 - TSS region transcription start site region 63352
Tssr59015 6 126939957 to 126939988 31 + TSS region transcription start site region 59015
D6Wsu163e 6 126939966 to 126975704 35738 + protein coding gene DNA segment, Chr 6, Wayne State University 163, expressed
Tssr59016 6 126939993 to 126940004 11 + TSS region transcription start site region 59016
Tssr63353 6 126966782 to 126966794 12 - TSS region transcription start site region 63353
Gm43125 6 126984596 to 126985325 729 - pseudogene predicted gene 43125
Tssr59017 6 126990540 to 126990585 45 + TSS region transcription start site region 59017
Gm43124 6 126990596 to 126990873 277 + pseudogene predicted gene 43124
Fgf6 6 127015542 to 127024718 9176 + protein coding gene fibroblast growth factor 6
Cpgi18029 6 127015610 to 127015848 238 CpG island CpG island 18029
D6Uwa1 6 127026058 to 127026259 201 DNA segment DNA segment, Chr 6, University of Western Australia 1
D6Mit218 6 127042856 to 127042975 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 218
Fgf23 6 127072902 to 127081408 8506 + protein coding gene fibroblast growth factor 23
Tssr59018 6 127072902 to 127072910 8 + TSS region transcription start site region 59018
Cpgi18030 6 127079850 to 127080713 863 CpG island CpG island 18030
Cpgi18031 6 127084852 to 127085119 267 CpG island CpG island 18031
Tigar 6 127085116 to 127109552 24436 - protein coding gene Trp53 induced glycolysis repulatory phosphatase
Platr31 6 127100297 to 127110467 10170 + antisense lncRNA gene pluripotency associated transcript 31
Cpgi18032 6 127109176 to 127109875 699 CpG island CpG island 18032
Tssr63354 6 127109496 to 127109507 11 - TSS region transcription start site region 63354
Tssr63355 6 127109517 to 127109569 52 - TSS region transcription start site region 63355
Gm43126 6 127122966 to 127126155 3189 + antisense lncRNA gene predicted gene 43126
Ccnd2 6 127125162 to 127152188 27026 - protein coding gene cyclin D2
Tssr63356 6 127125514 to 127125532 18 - TSS region transcription start site region 63356
Tssr63357 6 127125630 to 127125641 11 - TSS region transcription start site region 63357
Tssr63358 6 127125801 to 127125818 17 - TSS region transcription start site region 63358
Tssr63359 6 127125825 to 127125842 17 - TSS region transcription start site region 63359
Tssr63360 6 127128754 to 127128766 12 - TSS region transcription start site region 63360
Tssr63361 6 127128820 to 127128833 13 - TSS region transcription start site region 63361
Tssr63362 6 127129172 to 127129183 11 - TSS region transcription start site region 63362
Tssr63363 6 127129289 to 127129318 29 - TSS region transcription start site region 63363
Tssr63364 6 127130181 to 127130203 22 - TSS region transcription start site region 63364
Tssr59019 6 127130228 to 127130241 13 + TSS region transcription start site region 59019
Tssr63365 6 127130280 to 127130311 31 - TSS region transcription start site region 63365
Tssr63366 6 127139221 to 127139251 30 - TSS region transcription start site region 63366
Tssr63367 6 127142270 to 127142278 8 - TSS region transcription start site region 63367
Tssr63368 6 127148721 to 127148744 23 - TSS region transcription start site region 63368
Tssr63369 6 127148750 to 127148774 24 - TSS region transcription start site region 63369
Tssr63370 6 127148782 to 127148824 42 - TSS region transcription start site region 63370
9330179D12Rik 6 127149389 to 127212411 63022 + antisense lncRNA gene RIKEN cDNA 9330179D12 gene
Tssr59020 6 127149389 to 127149425 36 + TSS region transcription start site region 59020
Cpgi18033 6 127149409 to 127149561 152 CpG island CpG island 18033
Tssr63371 6 127149612 to 127149627 15 - TSS region transcription start site region 63371
Tssr63372 6 127149637 to 127149650 13 - TSS region transcription start site region 63372
Tssr63373 6 127149652 to 127149663 11 - TSS region transcription start site region 63373
Cpgi18034 6 127149813 to 127151080 1267 CpG island CpG island 18034
Tssr59021 6 127150236 to 127150243 7 + TSS region transcription start site region 59021
Tssr63374 6 127150663 to 127150676 13 - TSS region transcription start site region 63374
Tssr63375 6 127150996 to 127151014 18 - TSS region transcription start site region 63375
Tssr63376 6 127151032 to 127151039 7 - TSS region transcription start site region 63376
Tssr63377 6 127151044 to 127151055 11 - TSS region transcription start site region 63377
Cpgi18035 6 127151635 to 127152469 834 CpG island CpG island 18035
Tssr63378 6 127152458 to 127152474 16 - TSS region transcription start site region 63378
Tssr59022 6 127152569 to 127152574 5 + TSS region transcription start site region 59022
Cpgi18036 6 127152760 to 127152965 205 CpG island CpG island 18036
Tssr59023 6 127153259 to 127153263 4 + TSS region transcription start site region 59023
Cpgi18037 6 127153279 to 127153863 584 CpG island CpG island 18037
Tssr59024 6 127153642 to 127153652 10 + TSS region transcription start site region 59024
Cpgi18038 6 127154058 to 127155546 1488 CpG island CpG island 18038
Tssr63379 6 127154727 to 127154748 21 - TSS region transcription start site region 63379
Gm18995 6 127167575 to 127168094 519 + pseudogene predicted gene, 18995
Tpi-rs11 6 127183409 to 127183718 309 - pseudogene triosephosphate isomerase related sequence 11
Tssr59025 6 127233724 to 127233740 16 + TSS region transcription start site region 59025
Gm4968 6 127233762 to 127234619 857 + pseudogene predicted gene 4968
Gm43635 6 127251638 to 127254644 3006 - lincRNA gene predicted gene 43635
Gm7308 6 127282063 to 127282509 446 - pseudogene predicted pseudogene 7308
Gm38404 6 127296186 to 127307967 11781 - lincRNA gene predicted gene, 38404
Gm43636 6 127318341 to 127320575 2234 + unclassified gene predicted gene 43636
D6Mit133 6 127318511 to 127318621 110 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 133
Gm42458 6 127325489 to 127325857 368 - unclassified gene predicted gene 42458
Cpgi18039 6 127329974 to 127330889 915 CpG island CpG island 18039
Gm43631 6 127367947 to 127368479 532 - pseudogene predicted gene 43631