Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:126630663-127670676

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162 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc3 6 104503360 to 127042975 22539615 QTL susceptibility to lung cancer 3
Tssr63328 6 126638622 to 126638669 47 - TSS region transcription start site region 63328
Tssr63329 6 126640060 to 126640062 2 - TSS region transcription start site region 63329
Kcna1 6 126640397 to 126646384 5987 - protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 1
Tssr63330 6 126641716 to 126641730 14 - TSS region transcription start site region 63330
Tssr63331 6 126642086 to 126642098 12 - TSS region transcription start site region 63331
Cpgi18020 6 126642114 to 126642434 320 CpG island CpG island 18020
Cpgi18021 6 126642732 to 126643417 685 CpG island CpG island 18021
Cpgi18022 6 126643708 to 126645960 2252 CpG island CpG island 18022
Tssr63332 6 126644575 to 126644591 16 - TSS region transcription start site region 63332
Tssr63333 6 126644734 to 126644772 38 - TSS region transcription start site region 63333
Tssr63334 6 126644789 to 126644805 16 - TSS region transcription start site region 63334
Tssr63335 6 126644807 to 126644827 20 - TSS region transcription start site region 63335
Tssr63336 6 126644833 to 126644844 11 - TSS region transcription start site region 63336
Tssr63337 6 126645153 to 126645172 19 - TSS region transcription start site region 63337
Tssr63338 6 126645784 to 126645800 16 - TSS region transcription start site region 63338
D6Tem3 6 126646260 to 126646409 149 DNA segment DNA segment, Chr 6, Temple 3
D6Tem2 6 126685809 to 126686123 314 DNA segment DNA segment, Chr 6, Temple 2
Cpgi18023 6 126701163 to 126701665 502 CpG island CpG island 18023
Kcna6 6 126708329 to 126740674 32345 - protein coding gene potassium voltage-gated channel, shaker-related, subfamily, member 6
Tssr63339 6 126712630 to 126712680 50 - TSS region transcription start site region 63339
Tssr63340 6 126712687 to 126712696 9 - TSS region transcription start site region 63340
Gm33581 6 126718623 to 126758879 40256 + lncRNA gene predicted gene, 33581
Gm26673 6 126718684 to 126741601 22917 + antisense lncRNA gene predicted gene, 26673
Tssr59006 6 126718885 to 126718934 49 + TSS region transcription start site region 59006
Tssr63341 6 126738217 to 126738238 21 - TSS region transcription start site region 63341
Cpgi18024 6 126738229 to 126738726 497 CpG island CpG island 18024
Cpgi18025 6 126739172 to 126740700 1528 CpG island CpG island 18025
Tssr63342 6 126740289 to 126740323 34 - TSS region transcription start site region 63342
Tssr63343 6 126740613 to 126740623 10 - TSS region transcription start site region 63343
Tssr63344 6 126740627 to 126740681 54 - TSS region transcription start site region 63344
Gm20190 6 126761633 to 126784876 23243 + lncRNA gene predicted gene, 20190
Tssr59007 6 126761789 to 126761802 13 + TSS region transcription start site region 59007
Cpgi18026 6 126778549 to 126778703 154 CpG island CpG island 18026
Gm29788 6 126792449 to 126810644 18195 - pseudogene predicted gene, 29788
Tssr59008 6 126808339 to 126808351 12 + TSS region transcription start site region 59008
Tssr59009 6 126821593 to 126821614 21 + TSS region transcription start site region 59009
Ndufa9 6 126821863 to 126849144 27281 - protein coding gene NADH:ubiquinone oxidoreductase subunit A9
1700018A23Rik 6 126822377 to 126825177 2800 + antisense lncRNA gene RIKEN cDNA 1700018A23 gene
Tssr63345 6 126840841 to 126840845 4 - TSS region transcription start site region 63345
Cpgi18027 6 126848658 to 126849241 583 CpG island CpG island 18027
Tssr63346 6 126849109 to 126849141 32 - TSS region transcription start site region 63346
Tssr63347 6 126849147 to 126849149 2 - TSS region transcription start site region 63347
Tssr59010 6 126853091 to 126853116 25 + TSS region transcription start site region 59010
Akap3 6 126853098 to 126874308 21210 + protein coding gene A kinase (PRKA) anchor protein 3
Tssr2023 6 126853123 to 126853128 5 + TSS region transcription start site region 2023
Tssr59011 6 126853139 to 126853154 15 + TSS region transcription start site region 59011
Tssr63348 6 126854249 to 126854269 20 - TSS region transcription start site region 63348
Tssr59012 6 126854372 to 126854383 11 + TSS region transcription start site region 59012
Tssr59013 6 126854398 to 126854403 5 + TSS region transcription start site region 59013
Dyrk4 6 126876020 to 126921839 45819 - protein coding gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4
Tssr63349 6 126877297 to 126877330 33 - TSS region transcription start site region 63349
Tssr63350 6 126921791 to 126921801 10 - TSS region transcription start site region 63350
Tssr63351 6 126921804 to 126921827 23 - TSS region transcription start site region 63351
Tssr59014 6 126921920 to 126921958 38 + TSS region transcription start site region 59014
Rad51ap1 6 126923415 to 126939701 16286 - protein coding gene RAD51 associated protein 1
Gm17808 6 126931688 to 126932581 893 + pseudogene predicted gene, 17808
Cpgi18028 6 126939035 to 126939803 768 CpG island CpG island 18028
Tssr63352 6 126939524 to 126939604 80 - TSS region transcription start site region 63352
Tssr59015 6 126939957 to 126939988 31 + TSS region transcription start site region 59015
D6Wsu163e 6 126939966 to 126975704 35738 + protein coding gene DNA segment, Chr 6, Wayne State University 163, expressed
Tssr59016 6 126939993 to 126940004 11 + TSS region transcription start site region 59016
Tssr63353 6 126966782 to 126966794 12 - TSS region transcription start site region 63353
Gm43125 6 126984596 to 126985325 729 - pseudogene predicted gene 43125
Tssr59017 6 126990540 to 126990585 45 + TSS region transcription start site region 59017
Gm43124 6 126990596 to 126990873 277 + pseudogene predicted gene 43124
Fgf6 6 127015542 to 127024718 9176 + protein coding gene fibroblast growth factor 6
Cpgi18029 6 127015610 to 127015848 238 CpG island CpG island 18029
D6Uwa1 6 127026058 to 127026259 201 DNA segment DNA segment, Chr 6, University of Western Australia 1
D6Mit218 6 127042856 to 127042975 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 218
Fgf23 6 127072902 to 127081408 8506 + protein coding gene fibroblast growth factor 23
Tssr59018 6 127072902 to 127072910 8 + TSS region transcription start site region 59018
Cpgi18030 6 127079850 to 127080713 863 CpG island CpG island 18030
Cpgi18031 6 127084852 to 127085119 267 CpG island CpG island 18031
Tigar 6 127085116 to 127109552 24436 - protein coding gene Trp53 induced glycolysis repulatory phosphatase
Platr31 6 127100297 to 127110467 10170 + antisense lncRNA gene pluripotency associated transcript 31
Cpgi18032 6 127109176 to 127109875 699 CpG island CpG island 18032
Tssr63354 6 127109496 to 127109507 11 - TSS region transcription start site region 63354
Tssr63355 6 127109517 to 127109569 52 - TSS region transcription start site region 63355
Gm43126 6 127122966 to 127126155 3189 + antisense lncRNA gene predicted gene 43126
Ccnd2 6 127125162 to 127152188 27026 - protein coding gene cyclin D2
Tssr63356 6 127125514 to 127125532 18 - TSS region transcription start site region 63356
Tssr63357 6 127125630 to 127125641 11 - TSS region transcription start site region 63357
Tssr63358 6 127125801 to 127125818 17 - TSS region transcription start site region 63358
Tssr63359 6 127125825 to 127125842 17 - TSS region transcription start site region 63359
Tssr63360 6 127128754 to 127128766 12 - TSS region transcription start site region 63360
Tssr63361 6 127128820 to 127128833 13 - TSS region transcription start site region 63361
Tssr63362 6 127129172 to 127129183 11 - TSS region transcription start site region 63362
Tssr63363 6 127129289 to 127129318 29 - TSS region transcription start site region 63363
Tssr63364 6 127130181 to 127130203 22 - TSS region transcription start site region 63364
Tssr59019 6 127130228 to 127130241 13 + TSS region transcription start site region 59019
Tssr63365 6 127130280 to 127130311 31 - TSS region transcription start site region 63365
Tssr63366 6 127139221 to 127139251 30 - TSS region transcription start site region 63366
Tssr63367 6 127142270 to 127142278 8 - TSS region transcription start site region 63367
Tssr63368 6 127148721 to 127148744 23 - TSS region transcription start site region 63368
Tssr63369 6 127148750 to 127148774 24 - TSS region transcription start site region 63369
Tssr63370 6 127148782 to 127148824 42 - TSS region transcription start site region 63370
9330179D12Rik 6 127149389 to 127212411 63022 + antisense lncRNA gene RIKEN cDNA 9330179D12 gene
Tssr59020 6 127149389 to 127149425 36 + TSS region transcription start site region 59020
Cpgi18033 6 127149409 to 127149561 152 CpG island CpG island 18033
Tssr63371 6 127149612 to 127149627 15 - TSS region transcription start site region 63371
Tssr63372 6 127149637 to 127149650 13 - TSS region transcription start site region 63372
Tssr63373 6 127149652 to 127149663 11 - TSS region transcription start site region 63373
Cpgi18034 6 127149813 to 127151080 1267 CpG island CpG island 18034
Tssr59021 6 127150236 to 127150243 7 + TSS region transcription start site region 59021
Tssr63374 6 127150663 to 127150676 13 - TSS region transcription start site region 63374
Tssr63375 6 127150996 to 127151014 18 - TSS region transcription start site region 63375
Tssr63376 6 127151032 to 127151039 7 - TSS region transcription start site region 63376
Tssr63377 6 127151044 to 127151055 11 - TSS region transcription start site region 63377
Cpgi18035 6 127151635 to 127152469 834 CpG island CpG island 18035
Tssr63378 6 127152458 to 127152474 16 - TSS region transcription start site region 63378
Tssr59022 6 127152569 to 127152574 5 + TSS region transcription start site region 59022
Cpgi18036 6 127152760 to 127152965 205 CpG island CpG island 18036
Tssr59023 6 127153259 to 127153263 4 + TSS region transcription start site region 59023
Cpgi18037 6 127153279 to 127153863 584 CpG island CpG island 18037
Tssr59024 6 127153642 to 127153652 10 + TSS region transcription start site region 59024
Cpgi18038 6 127154058 to 127155546 1488 CpG island CpG island 18038
Tssr63379 6 127154727 to 127154748 21 - TSS region transcription start site region 63379
Gm18995 6 127167575 to 127168094 519 + pseudogene predicted gene, 18995
Tpi-rs11 6 127183409 to 127183718 309 - pseudogene triosephosphate isomerase related sequence 11
Tssr59025 6 127233724 to 127233740 16 + TSS region transcription start site region 59025
Gm4968 6 127233762 to 127234619 857 + pseudogene predicted gene 4968
Gm43635 6 127251638 to 127254644 3006 - lincRNA gene predicted gene 43635
Gm7308 6 127282063 to 127282509 446 - pseudogene predicted pseudogene 7308
Gm38404 6 127296186 to 127307967 11781 - lincRNA gene predicted gene, 38404
Gm43636 6 127318341 to 127320575 2234 + unclassified gene predicted gene 43636
D6Mit133 6 127318511 to 127318621 110 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 133
Gm42458 6 127325489 to 127325857 368 - unclassified gene predicted gene 42458
Cpgi18039 6 127329974 to 127330889 915 CpG island CpG island 18039
Gm43631 6 127367947 to 127368479 532 - pseudogene predicted gene 43631
Gm34091 6 127411130 to 127411733 603 + pseudogene predicted gene, 34091
Tssr59026 6 127434427 to 127434439 12 + TSS region transcription start site region 59026
Tssr59027 6 127446792 to 127446803 11 + TSS region transcription start site region 59027
Tssr59028 6 127446819 to 127446872 53 + TSS region transcription start site region 59028
Parp11 6 127446840 to 127494261 47421 + protein coding gene poly (ADP-ribose) polymerase family, member 11
Tssr59029 6 127446875 to 127446888 13 + TSS region transcription start site region 59029
Gm34148 6 127447135 to 127448648 1513 - lncRNA gene predicted gene, 34148
Cpgi18040 6 127453361 to 127454055 694 CpG island CpG island 18040
Tssr59030 6 127453608 to 127453662 54 + TSS region transcription start site region 59030
Tssr59031 6 127453667 to 127453685 18 + TSS region transcription start site region 59031
Tssr59032 6 127453705 to 127453716 11 + TSS region transcription start site region 59032
Tssr59033 6 127455313 to 127455316 3 + TSS region transcription start site region 59033
Tssr59034 6 127457356 to 127457371 15 + TSS region transcription start site region 59034
Tssr63380 6 127458625 to 127458638 13 - TSS region transcription start site region 63380
Tssr59035 6 127474137 to 127474151 14 + TSS region transcription start site region 59035
Tssr2024 6 127474175 to 127474193 18 + TSS region transcription start site region 2024
Gm43633 6 127485793 to 127488122 2329 + unclassified gene predicted gene 43633
Tssr2025 6 127543152 to 127543153 1 + TSS region transcription start site region 2025
Cracr2a 6 127561064 to 127673733 112669 + protein coding gene calcium release activated channel regulator 2A
Cpgi18041 6 127561141 to 127561544 403 CpG island CpG island 18041
Tssr59036 6 127561207 to 127561241 34 + TSS region transcription start site region 59036
Tssr59037 6 127561312 to 127561343 31 + TSS region transcription start site region 59037
Tssr59038 6 127561347 to 127561369 22 + TSS region transcription start site region 59038
Tssr59039 6 127577937 to 127577938 1 + TSS region transcription start site region 59039
Tssr59040 6 127577945 to 127577957 12 + TSS region transcription start site region 59040
Tssr59041 6 127577963 to 127577979 16 + TSS region transcription start site region 59041
Tssr59042 6 127577981 to 127578000 19 + TSS region transcription start site region 59042
Tssr59043 6 127582123 to 127582186 63 + TSS region transcription start site region 59043
Tssr59044 6 127582201 to 127582212 11 + TSS region transcription start site region 59044
D6Mit335 6 127587651 to 127587777 126 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 335
D6Mit368 6 127639952 to 127640068 116 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 368
Gm43634 6 127644440 to 127657925 13485 + lincRNA gene predicted gene 43634