Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:125561867-127112279

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc3 6 104503360 to 127042975 22539615 QTL susceptibility to lung cancer 3
Vwf 6 125552935 to 125686679 133744 + protein coding gene Von Willebrand factor
Tssr58994 6 125565585 to 125565597 12 + TSS region transcription start site region 58994
Tssr63316 6 125573318 to 125573345 27 - TSS region transcription start site region 63316
Tssr58995 6 125584415 to 125584431 16 + TSS region transcription start site region 58995
Tssr58996 6 125590860 to 125590868 8 + TSS region transcription start site region 58996
Tssr63317 6 125595020 to 125595023 3 - TSS region transcription start site region 63317
Cpgi18011 6 125603317 to 125603640 323 CpG island CpG island 18011
Cpgi18012 6 125604166 to 125604347 181 CpG island CpG island 18012
D6Mit334 6 125618124 to 125618224 100 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 334
Tssr58997 6 125685689 to 125685699 10 + TSS region transcription start site region 58997
Tssr58998 6 125685707 to 125685736 29 + TSS region transcription start site region 58998
Cpgi18013 6 125690371 to 125690644 273 CpG island CpG island 18013
Tssr58999 6 125690372 to 125690381 9 + TSS region transcription start site region 58999
Tssr59000 6 125690396 to 125690409 13 + TSS region transcription start site region 59000
Ano2 6 125690419 to 126040126 349707 + protein coding gene anoctamin 2
Tssr59001 6 125690615 to 125690624 9 + TSS region transcription start site region 59001
Tssr59002 6 125690651 to 125690662 11 + TSS region transcription start site region 59002
Tssr59003 6 125690668 to 125690679 11 + TSS region transcription start site region 59003
Cpgi18014 6 125711309 to 125711501 192 CpG island CpG island 18014
Tssr59004 6 125711492 to 125711511 19 + TSS region transcription start site region 59004
Gm16303 6 125739406 to 125739795 389 + pseudogene predicted gene 16303
Gm38898 6 125787285 to 125791251 3966 - lncRNA gene predicted gene, 38898
Gm33202 6 125803590 to 125812322 8732 - lncRNA gene predicted gene, 33202
Tssr63318 6 125812292 to 125812324 32 - TSS region transcription start site region 63318
Gm24947 6 125884415 to 125884524 109 + snRNA gene predicted gene, 24947
Ntf3 6 126101412 to 126166791 65379 - protein coding gene neurotrophin 3
2900084I15Rik 6 126138689 to 126139218 529 unclassified gene RIKEN cDNA 2900084I15 gene
D6Mit333 6 126148758 to 126148879 121 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 333
Tssr59005 6 126163277 to 126163286 9 + TSS region transcription start site region 59005
Cpgi18015 6 126163313 to 126164188 875 CpG island CpG island 18015
Cpgi18016 6 126164525 to 126165131 606 CpG island CpG island 18016
Tssr63319 6 126164948 to 126164965 17 - TSS region transcription start site region 63319
Tssr2022 6 126164970 to 126164983 13 - TSS region transcription start site region 2022
Cpgi18017 6 126165736 to 126165902 166 CpG island CpG island 18017
Tssr63320 6 126166726 to 126166761 35 - TSS region transcription start site region 63320
Cpgi18018 6 126166943 to 126167103 160 CpG island CpG island 18018
Gm10415 6 126286649 to 126328686 42037 - lincRNA gene predicted gene 10415
D6Mit256 6 126293091 to 126293215 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 256
Gm33276 6 126330253 to 126365998 35745 - lncRNA gene predicted gene, 33276
Gm29009 6 126331750 to 126334588 2838 + lincRNA gene predicted gene 29009
Gm44431 6 126336867 to 126337279 412 + pseudogene predicted gene, 44431
Tssr63321 6 126365937 to 126365952 15 - TSS region transcription start site region 63321
D6Tem4 6 126380344 to 126380507 163 DNA segment DNA segment, Chr 6, Temple 4
Gm38899 6 126486460 to 126514874 28414 - lncRNA gene predicted gene, 38899
Kcna5 6 126532551 to 126535412 2861 - protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 5
Cpgi18019 6 126534344 to 126535372 1028 CpG island CpG island 18019
Tssr63322 6 126534997 to 126535034 37 - TSS region transcription start site region 63322
Tssr63323 6 126535264 to 126535277 13 - TSS region transcription start site region 63323
Tssr63324 6 126535365 to 126535376 11 - TSS region transcription start site region 63324
Tssr63325 6 126535386 to 126535413 27 - TSS region transcription start site region 63325
Tssr63326 6 126535424 to 126535452 28 - TSS region transcription start site region 63326
Tssr63327 6 126535514 to 126535532 18 - TSS region transcription start site region 63327
Gm45869 6 126549869 to 126556169 6300 - lincRNA gene predicted gene 45869
Gm33320 6 126554387 to 126554916 529 - lncRNA gene predicted gene, 33320
D6Tem1 6 126566368 to 126566526 158 DNA segment DNA segment, Chr 6, Temple 1
Gm33449 6 126567995 to 126584290 16295 - lncRNA gene predicted gene, 33449
Gm33496 6 126598682 to 126610836 12154 + lncRNA gene predicted gene, 33496
Tssr63328 6 126638622 to 126638669 47 - TSS region transcription start site region 63328
Tssr63329 6 126640060 to 126640062 2 - TSS region transcription start site region 63329
Kcna1 6 126640397 to 126646384 5987 - protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 1
Tssr63330 6 126641716 to 126641730 14 - TSS region transcription start site region 63330
Tssr63331 6 126642086 to 126642098 12 - TSS region transcription start site region 63331
Cpgi18020 6 126642114 to 126642434 320 CpG island CpG island 18020
Cpgi18021 6 126642732 to 126643417 685 CpG island CpG island 18021
Cpgi18022 6 126643708 to 126645960 2252 CpG island CpG island 18022
Tssr63332 6 126644575 to 126644591 16 - TSS region transcription start site region 63332
Tssr63333 6 126644734 to 126644772 38 - TSS region transcription start site region 63333
Tssr63334 6 126644789 to 126644805 16 - TSS region transcription start site region 63334
Tssr63335 6 126644807 to 126644827 20 - TSS region transcription start site region 63335
Tssr63336 6 126644833 to 126644844 11 - TSS region transcription start site region 63336
Tssr63337 6 126645153 to 126645172 19 - TSS region transcription start site region 63337
Tssr63338 6 126645784 to 126645800 16 - TSS region transcription start site region 63338
D6Tem3 6 126646260 to 126646409 149 DNA segment DNA segment, Chr 6, Temple 3
D6Tem2 6 126685809 to 126686123 314 DNA segment DNA segment, Chr 6, Temple 2
Cpgi18023 6 126701163 to 126701665 502 CpG island CpG island 18023
Kcna6 6 126708329 to 126740674 32345 - protein coding gene potassium voltage-gated channel, shaker-related, subfamily, member 6
Tssr63339 6 126712630 to 126712680 50 - TSS region transcription start site region 63339
Tssr63340 6 126712687 to 126712696 9 - TSS region transcription start site region 63340
Gm33581 6 126718623 to 126758879 40256 + lncRNA gene predicted gene, 33581
Gm26673 6 126718684 to 126741601 22917 + antisense lncRNA gene predicted gene, 26673
Tssr59006 6 126718885 to 126718934 49 + TSS region transcription start site region 59006
Tssr63341 6 126738217 to 126738238 21 - TSS region transcription start site region 63341
Cpgi18024 6 126738229 to 126738726 497 CpG island CpG island 18024
Cpgi18025 6 126739172 to 126740700 1528 CpG island CpG island 18025
Tssr63342 6 126740289 to 126740323 34 - TSS region transcription start site region 63342
Tssr63343 6 126740613 to 126740623 10 - TSS region transcription start site region 63343
Tssr63344 6 126740627 to 126740681 54 - TSS region transcription start site region 63344
Gm20190 6 126761633 to 126784876 23243 + lncRNA gene predicted gene, 20190
Tssr59007 6 126761789 to 126761802 13 + TSS region transcription start site region 59007
Cpgi18026 6 126778549 to 126778703 154 CpG island CpG island 18026
Gm29788 6 126792449 to 126810644 18195 - pseudogene predicted gene, 29788
Tssr59008 6 126808339 to 126808351 12 + TSS region transcription start site region 59008
Tssr59009 6 126821593 to 126821614 21 + TSS region transcription start site region 59009
Ndufa9 6 126821863 to 126849144 27281 - protein coding gene NADH:ubiquinone oxidoreductase subunit A9
1700018A23Rik 6 126822377 to 126825177 2800 + antisense lncRNA gene RIKEN cDNA 1700018A23 gene
Tssr63345 6 126840841 to 126840845 4 - TSS region transcription start site region 63345
Cpgi18027 6 126848658 to 126849241 583 CpG island CpG island 18027
Tssr63346 6 126849109 to 126849141 32 - TSS region transcription start site region 63346
Tssr63347 6 126849147 to 126849149 2 - TSS region transcription start site region 63347
Tssr59010 6 126853091 to 126853116 25 + TSS region transcription start site region 59010
Akap3 6 126853098 to 126874308 21210 + protein coding gene A kinase (PRKA) anchor protein 3
Tssr2023 6 126853123 to 126853128 5 + TSS region transcription start site region 2023
Tssr59011 6 126853139 to 126853154 15 + TSS region transcription start site region 59011
Tssr63348 6 126854249 to 126854269 20 - TSS region transcription start site region 63348
Tssr59012 6 126854372 to 126854383 11 + TSS region transcription start site region 59012
Tssr59013 6 126854398 to 126854403 5 + TSS region transcription start site region 59013
Dyrk4 6 126876020 to 126921839 45819 - protein coding gene dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 4
Tssr63349 6 126877297 to 126877330 33 - TSS region transcription start site region 63349
Tssr63350 6 126921791 to 126921801 10 - TSS region transcription start site region 63350
Tssr63351 6 126921804 to 126921827 23 - TSS region transcription start site region 63351
Tssr59014 6 126921920 to 126921958 38 + TSS region transcription start site region 59014
Rad51ap1 6 126923415 to 126939701 16286 - protein coding gene RAD51 associated protein 1
Gm17808 6 126931688 to 126932581 893 + pseudogene predicted gene, 17808
Cpgi18028 6 126939035 to 126939803 768 CpG island CpG island 18028
Tssr63352 6 126939524 to 126939604 80 - TSS region transcription start site region 63352
Tssr59015 6 126939957 to 126939988 31 + TSS region transcription start site region 59015
D6Wsu163e 6 126939966 to 126975704 35738 + protein coding gene DNA segment, Chr 6, Wayne State University 163, expressed
Tssr59016 6 126939993 to 126940004 11 + TSS region transcription start site region 59016
Tssr63353 6 126966782 to 126966794 12 - TSS region transcription start site region 63353
Gm43125 6 126984596 to 126985325 729 - pseudogene predicted gene 43125
Tssr59017 6 126990540 to 126990585 45 + TSS region transcription start site region 59017
Gm43124 6 126990596 to 126990873 277 + pseudogene predicted gene 43124
Fgf6 6 127015542 to 127024718 9176 + protein coding gene fibroblast growth factor 6
Cpgi18029 6 127015610 to 127015848 238 CpG island CpG island 18029
D6Uwa1 6 127026058 to 127026259 201 DNA segment DNA segment, Chr 6, University of Western Australia 1
D6Mit218 6 127042856 to 127042975 119 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 218
Tssr59018 6 127072902 to 127072910 8 + TSS region transcription start site region 59018
Fgf23 6 127072902 to 127081408 8506 + protein coding gene fibroblast growth factor 23
Cpgi18030 6 127079850 to 127080713 863 CpG island CpG island 18030
Cpgi18031 6 127084852 to 127085119 267 CpG island CpG island 18031
Tigar 6 127085116 to 127109552 24436 - protein coding gene Trp53 induced glycolysis repulatory phosphatase
Platr31 6 127100297 to 127110467 10170 + antisense lncRNA gene pluripotency associated transcript 31
Cpgi18032 6 127109176 to 127109875 699 CpG island CpG island 18032
Tssr63354 6 127109496 to 127109507 11 - TSS region transcription start site region 63354
Tssr63355 6 127109517 to 127109569 52 - TSS region transcription start site region 63355