Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:125271064-129963733

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947 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sluc3 6 104503360 to 127042975 22539615 QTL susceptibility to lung cancer 3
Tilss4 6 112269957 to 125356785 13086828 QTL TNF-induced lethal shock susceptibility 3
Ath37 6 116664897 to 128519025 11854128 QTL atherosclerosis 37
4930417O13Rik 6 125265525 to 125273777 8252 + lncRNA gene RIKEN cDNA 4930417O13 gene
Tssr63283 6 125275940 to 125275943 3 - TSS region transcription start site region 63283
Tuba3a 6 125278274 to 125286042 7768 - protein coding gene tubulin, alpha 3A
Cpgi18000 6 125285765 to 125286421 656 CpG island CpG island 18000
Tssr63284 6 125286015 to 125286050 35 - TSS region transcription start site region 63284
Tssr63285 6 125286062 to 125286075 13 - TSS region transcription start site region 63285
Ltbr 6 125306571 to 125313870 7299 - protein coding gene lymphotoxin B receptor
D6Mit134 6 125308619 to 125308746 127 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 134
Tssr63286 6 125308768 to 125308782 14 - TSS region transcription start site region 63286
Tssr58950 6 125309688 to 125309724 36 + TSS region transcription start site region 58950
Tssr63287 6 125313054 to 125313083 29 - TSS region transcription start site region 63287
Cpgi18001 6 125313649 to 125314188 539 CpG island CpG island 18001
Tssr63288 6 125313698 to 125313723 25 - TSS region transcription start site region 63288
Tssr63289 6 125313796 to 125313805 9 - TSS region transcription start site region 63289
Tssr63290 6 125313825 to 125313836 11 - TSS region transcription start site region 63290
Tssr63291 6 125313844 to 125313878 34 - TSS region transcription start site region 63291
Tssr58951 6 125314001 to 125314054 53 + TSS region transcription start site region 58951
D6Mit217 6 125318823 to 125319007 184 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 217
Tssr58952 6 125320633 to 125320639 6 + TSS region transcription start site region 58952
Scnn1a 6 125321052 to 125344943 23891 + protein coding gene sodium channel, nonvoltage-gated 1 alpha
Tssr58953 6 125321223 to 125321237 14 + TSS region transcription start site region 58953
Tssr58954 6 125321258 to 125321273 15 + TSS region transcription start site region 58954
Tssr58955 6 125321333 to 125321360 27 + TSS region transcription start site region 58955
Tssr58956 6 125321390 to 125321406 16 + TSS region transcription start site region 58956
Tssr58957 6 125321409 to 125321420 11 + TSS region transcription start site region 58957
Cpgi18002 6 125321559 to 125322322 763 CpG island CpG island 18002
Tssr2018 6 125321812 to 125321833 21 + TSS region transcription start site region 2018
Tssr58958 6 125321858 to 125321869 11 + TSS region transcription start site region 58958
Tssr58959 6 125322879 to 125322892 13 + TSS region transcription start site region 58959
Tssr58960 6 125322906 to 125322913 7 + TSS region transcription start site region 58960
Cpgi18003 6 125330927 to 125331305 378 CpG island CpG island 18003
Tssr58961 6 125337794 to 125337813 19 + TSS region transcription start site region 58961
Tssr2019 6 125337859 to 125337868 9 + TSS region transcription start site region 2019
Tssr58962 6 125342503 to 125342518 15 + TSS region transcription start site region 58962
Tssr58963 6 125342528 to 125342545 17 + TSS region transcription start site region 58963
Tssr58964 6 125342762 to 125342773 11 + TSS region transcription start site region 58964
Tssr58965 6 125342779 to 125342819 40 + TSS region transcription start site region 58965
Tssr63292 6 125344394 to 125344407 13 - TSS region transcription start site region 63292
Tssr58966 6 125345199 to 125345208 9 + TSS region transcription start site region 58966
Tssr58967 6 125345805 to 125345810 5 + TSS region transcription start site region 58967
Cpgi18004 6 125349269 to 125350046 777 CpG island CpG island 18004
Tssr58968 6 125349699 to 125349775 76 + TSS region transcription start site region 58968
Cms2 6 125349723 to 125362483 12760 QTL resistance to Coccidioides immitis 2
Tnfrsf1a 6 125349723 to 125362483 12760 + protein coding gene tumor necrosis factor receptor superfamily, member 1a
Hrl 6 125349723 to 125362483 12760 QTL herpes resistance locus
Tssr58969 6 125349776 to 125349787 11 + TSS region transcription start site region 58969
Tssr58970 6 125349791 to 125349805 14 + TSS region transcription start site region 58970
Tssr58971 6 125349807 to 125349820 13 + TSS region transcription start site region 58971
Tssr2020 6 125350549 to 125350570 21 - TSS region transcription start site region 2020
Tssr63293 6 125351400 to 125351422 22 - TSS region transcription start site region 63293
Btts 6 125356646 to 134119623 8762977 QTL bitterness tasting
D6Mit254 6 125356646 to 125356785 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 254
Eila2 6 125356785 to 48726556 -76630229 QTL ethanol induced locomotor activity 2
Tssr58972 6 125361297 to 125361335 38 + TSS region transcription start site region 58972
Cpgi18005 6 125361470 to 125362153 683 CpG island CpG island 18005
Tssr58973 6 125361944 to 125361975 31 + TSS region transcription start site region 58973
Plekhg6 6 125362660 to 125380793 18133 - protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 6
Cpgi18006 6 125363369 to 125363656 287 CpG island CpG island 18006
Tssr63294 6 125379890 to 125379917 27 - TSS region transcription start site region 63294
Cpgi18007 6 125380250 to 125380899 649 CpG island CpG island 18007
Tssr63295 6 125380460 to 125380502 42 - TSS region transcription start site region 63295
Tssr63296 6 125380503 to 125380526 23 - TSS region transcription start site region 63296
Tssr58974 6 125411307 to 125411335 28 + TSS region transcription start site region 58974
D6Jpk2 6 125418005 to 125418132 127 DNA segment DNA segment, Chr 6, Japan, Kominami 2
Tssr2021 6 125425443 to 125425475 32 - TSS region transcription start site region 2021
Cpgi18008 6 125426458 to 125426751 293 CpG island CpG island 18008
Gm32673 6 125430930 to 125460475 29545 + lncRNA gene predicted gene, 32673
Tssr58975 6 125432662 to 125432674 12 + TSS region transcription start site region 58975
Tssr58976 6 125432679 to 125432690 11 + TSS region transcription start site region 58976
Tssr58977 6 125432700 to 125432724 24 + TSS region transcription start site region 58977
Tssr58978 6 125432731 to 125432752 21 + TSS region transcription start site region 58978
Tssr58979 6 125432773 to 125432784 11 + TSS region transcription start site region 58979
Tssr58980 6 125434327 to 125434332 5 + TSS region transcription start site region 58980
Cd9 6 125460266 to 125494755 34489 - protein coding gene CD9 antigen
Tssr63297 6 125460588 to 125460599 11 - TSS region transcription start site region 63297
Tssr63298 6 125460605 to 125460615 10 - TSS region transcription start site region 63298
Tssr63299 6 125460630 to 125460641 11 - TSS region transcription start site region 63299
Tssr63300 6 125460656 to 125460668 12 - TSS region transcription start site region 63300
Tssr63301 6 125462155 to 125462179 24 - TSS region transcription start site region 63301
Tssr63302 6 125463711 to 125463743 32 - TSS region transcription start site region 63302
Cpgi18009 6 125467273 to 125467499 226 CpG island CpG island 18009
Tssr63303 6 125468325 to 125468332 7 - TSS region transcription start site region 63303
Gm28809 6 125481363 to 125484678 3315 + antisense lncRNA gene predicted gene 28809
Tssr63304 6 125481715 to 125481725 10 - TSS region transcription start site region 63304
Tssr63305 6 125481768 to 125481773 5 - TSS region transcription start site region 63305
Tssr63306 6 125481779 to 125481788 9 - TSS region transcription start site region 63306
Tssr63307 6 125481814 to 125481822 8 - TSS region transcription start site region 63307
Tssr63308 6 125481829 to 125481837 8 - TSS region transcription start site region 63308
Tssr58981 6 125481925 to 125481949 24 + TSS region transcription start site region 58981
Tssr58982 6 125481968 to 125481979 11 + TSS region transcription start site region 58982
Tssr58983 6 125482524 to 125482549 25 + TSS region transcription start site region 58983
Tssr63309 6 125483498 to 125483508 10 - TSS region transcription start site region 63309
Tssr63310 6 125483511 to 125483525 14 - TSS region transcription start site region 63310
Tssr58984 6 125483653 to 125483699 46 + TSS region transcription start site region 58984
Gm38549 6 125493038 to 125499609 6571 + lncRNA gene predicted gene, 38549
Tssr58985 6 125493312 to 125493332 20 + TSS region transcription start site region 58985
Cpgi18010 6 125494038 to 125495113 1075 CpG island CpG island 18010
Tssr58986 6 125494419 to 125494454 35 + TSS region transcription start site region 58986
Tssr63311 6 125494638 to 125494669 31 - TSS region transcription start site region 63311
Tssr63312 6 125494706 to 125494748 42 - TSS region transcription start site region 63312
Tssr63313 6 125494754 to 125494765 11 - TSS region transcription start site region 63313
Tssr58987 6 125494869 to 125494904 35 + TSS region transcription start site region 58987
Gm26728 6 125499647 to 125509830 10183 + lncRNA gene predicted gene, 26728
Tssr58988 6 125532552 to 125532559 7 + TSS region transcription start site region 58988
Tssr58989 6 125532592 to 125532603 11 + TSS region transcription start site region 58989
Tssr63314 6 125533348 to 125533357 9 - TSS region transcription start site region 63314
Tssr58990 6 125538734 to 125538741 7 + TSS region transcription start site region 58990
Tssr58991 6 125539708 to 125539716 8 + TSS region transcription start site region 58991
Tssr63315 6 125540302 to 125540322 20 - TSS region transcription start site region 63315
Gm33144 6 125542652 to 125546613 3961 + lncRNA gene predicted gene, 33144
Tssr58992 6 125552933 to 125552938 5 + TSS region transcription start site region 58992
Vwf 6 125552935 to 125686679 133744 + protein coding gene Von Willebrand factor
Tssr58993 6 125552953 to 125552980 27 + TSS region transcription start site region 58993
Tssr58994 6 125565585 to 125565597 12 + TSS region transcription start site region 58994
Tssr63316 6 125573318 to 125573345 27 - TSS region transcription start site region 63316
Tssr58995 6 125584415 to 125584431 16 + TSS region transcription start site region 58995
Tssr58996 6 125590860 to 125590868 8 + TSS region transcription start site region 58996
Tssr63317 6 125595020 to 125595023 3 - TSS region transcription start site region 63317
Cpgi18011 6 125603317 to 125603640 323 CpG island CpG island 18011
Cpgi18012 6 125604166 to 125604347 181 CpG island CpG island 18012
D6Mit334 6 125618124 to 125618224 100 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 334
Tssr58997 6 125685689 to 125685699 10 + TSS region transcription start site region 58997
Tssr58998 6 125685707 to 125685736 29 + TSS region transcription start site region 58998
Cpgi18013 6 125690371 to 125690644 273 CpG island CpG island 18013
Tssr58999 6 125690372 to 125690381 9 + TSS region transcription start site region 58999
Tssr59000 6 125690396 to 125690409 13 + TSS region transcription start site region 59000
Ano2 6 125690419 to 126040126 349707 + protein coding gene anoctamin 2
Tssr59001 6 125690615 to 125690624 9 + TSS region transcription start site region 59001
Tssr59002 6 125690651 to 125690662 11 + TSS region transcription start site region 59002
Tssr59003 6 125690668 to 125690679 11 + TSS region transcription start site region 59003
Cpgi18014 6 125711309 to 125711501 192 CpG island CpG island 18014
Tssr59004 6 125711492 to 125711511 19 + TSS region transcription start site region 59004
Gm16303 6 125739406 to 125739795 389 + pseudogene predicted gene 16303
Gm38898 6 125787285 to 125791251 3966 - lncRNA gene predicted gene, 38898
Gm33202 6 125803590 to 125812322 8732 - lncRNA gene predicted gene, 33202
Tssr63318 6 125812292 to 125812324 32 - TSS region transcription start site region 63318
Gm24947 6 125884415 to 125884524 109 + snRNA gene predicted gene, 24947
Ntf3 6 126101412 to 126166791 65379 - protein coding gene neurotrophin 3
2900084I15Rik 6 126138689 to 126139218 529 unclassified gene RIKEN cDNA 2900084I15 gene
D6Mit333 6 126148758 to 126148879 121 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 333
Tssr59005 6 126163277 to 126163286 9 + TSS region transcription start site region 59005
Cpgi18015 6 126163313 to 126164188 875 CpG island CpG island 18015
Cpgi18016 6 126164525 to 126165131 606 CpG island CpG island 18016
Tssr63319 6 126164948 to 126164965 17 - TSS region transcription start site region 63319
Tssr2022 6 126164970 to 126164983 13 - TSS region transcription start site region 2022
Cpgi18017 6 126165736 to 126165902 166 CpG island CpG island 18017
Tssr63320 6 126166726 to 126166761 35 - TSS region transcription start site region 63320
Cpgi18018 6 126166943 to 126167103 160 CpG island CpG island 18018
Gm10415 6 126286649 to 126328686 42037 - lincRNA gene predicted gene 10415
D6Mit256 6 126293091 to 126293215 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 256
Gm33276 6 126330253 to 126365998 35745 - lncRNA gene predicted gene, 33276
Gm29009 6 126331750 to 126334588 2838 + lincRNA gene predicted gene 29009
Gm44431 6 126336867 to 126337279 412 + pseudogene predicted gene, 44431
Tssr63321 6 126365937 to 126365952 15 - TSS region transcription start site region 63321
D6Tem4 6 126380344 to 126380507 163 DNA segment DNA segment, Chr 6, Temple 4
Gm38899 6 126486460 to 126514874 28414 - lncRNA gene predicted gene, 38899
Kcna5 6 126532551 to 126535412 2861 - protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 5
Cpgi18019 6 126534344 to 126535372 1028 CpG island CpG island 18019
Tssr63322 6 126534997 to 126535034 37 - TSS region transcription start site region 63322
Tssr63323 6 126535264 to 126535277 13 - TSS region transcription start site region 63323
Tssr63324 6 126535365 to 126535376 11 - TSS region transcription start site region 63324
Tssr63325 6 126535386 to 126535413 27 - TSS region transcription start site region 63325
Tssr63326 6 126535424 to 126535452 28 - TSS region transcription start site region 63326
Tssr63327 6 126535514 to 126535532 18 - TSS region transcription start site region 63327
Gm45869 6 126549869 to 126556169 6300 - lincRNA gene predicted gene 45869
Gm33320 6 126554387 to 126554916 529 - lncRNA gene predicted gene, 33320
D6Tem1 6 126566368 to 126566526 158 DNA segment DNA segment, Chr 6, Temple 1
Gm33449 6 126567995 to 126584290 16295 - lncRNA gene predicted gene, 33449
Gm33496 6 126598682 to 126610836 12154 + lncRNA gene predicted gene, 33496
Tssr63328 6 126638622 to 126638669 47 - TSS region transcription start site region 63328
Tssr63329 6 126640060 to 126640062 2 - TSS region transcription start site region 63329
Kcna1 6 126640397 to 126646384 5987 - protein coding gene potassium voltage-gated channel, shaker-related subfamily, member 1
Tssr63330 6 126641716 to 126641730 14 - TSS region transcription start site region 63330
Tssr63331 6 126642086 to 126642098 12 - TSS region transcription start site region 63331
Cpgi18020 6 126642114 to 126642434 320 CpG island CpG island 18020
Cpgi18021 6 126642732 to 126643417 685 CpG island CpG island 18021
Cpgi18022 6 126643708 to 126645960 2252 CpG island CpG island 18022
Tssr63332 6 126644575 to 126644591 16 - TSS region transcription start site region 63332
Tssr63333 6 126644734 to 126644772 38 - TSS region transcription start site region 63333
Tssr63334 6 126644789 to 126644805 16 - TSS region transcription start site region 63334
Tssr63335 6 126644807 to 126644827 20 - TSS region transcription start site region 63335
Tssr63336 6 126644833 to 126644844 11 - TSS region transcription start site region 63336
Tssr63337 6 126645153 to 126645172 19 - TSS region transcription start site region 63337
Tssr63338 6 126645784 to 126645800 16 - TSS region transcription start site region 63338
D6Tem3 6 126646260 to 126646409 149 DNA segment DNA segment, Chr 6, Temple 3
D6Tem2 6 126685809 to 126686123 314 DNA segment DNA segment, Chr 6, Temple 2
Cpgi18023 6 126701163 to 126701665 502 CpG island CpG island 18023
Kcna6 6 126708329 to 126740674 32345 - protein coding gene potassium voltage-gated channel, shaker-related, subfamily, member 6
Tssr63339 6 126712630 to 126712680 50 - TSS region transcription start site region 63339
Tssr63340 6 126712687 to 126712696 9 - TSS region transcription start site region 63340
Gm33581 6 126718623 to 126758879 40256 + lncRNA gene predicted gene, 33581
Gm26673 6 126718684 to 126741601 22917 + antisense lncRNA gene predicted gene, 26673
Tssr59006 6 126718885 to 126718934 49 + TSS region transcription start site region 59006
Tssr63341 6 126738217 to 126738238 21 - TSS region transcription start site region 63341
Cpgi18024 6 126738229 to 126738726 497 CpG island CpG island 18024
Cpgi18025 6 126739172 to 126740700 1528 CpG island CpG island 18025
Tssr63342 6 126740289 to 126740323 34 - TSS region transcription start site region 63342