Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:125216462-125316471

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vamp1 6 125215581 to 125222306 6725 + protein coding gene vesicle-associated membrane protein 1
Tssr63260 6 125217332 to 125217341 9 - TSS region transcription start site region 63260
Tssr58932 6 125218981 to 125218994 13 + TSS region transcription start site region 58932
Tssr58933 6 125221724 to 125221735 11 + TSS region transcription start site region 58933
Tssr58934 6 125221825 to 125221841 16 + TSS region transcription start site region 58934
Tssr58935 6 125221889 to 125221903 14 + TSS region transcription start site region 58935
Tapbpl 6 125223933 to 125231860 7927 - protein coding gene TAP binding protein-like
Tssr63261 6 125231075 to 125231079 4 - TSS region transcription start site region 63261
Tssr63262 6 125231139 to 125231173 34 - TSS region transcription start site region 63262
Tssr58936 6 125231255 to 125231285 30 + TSS region transcription start site region 58936
E130112N10Rik 6 125231276 to 125239934 8658 + lncRNA gene RIKEN cDNA E130112N10 gene
Tssr63263 6 125231648 to 125231689 41 - TSS region transcription start site region 63263
Tssr63264 6 125231702 to 125231737 35 - TSS region transcription start site region 63264
Tssr63265 6 125231772 to 125231824 52 - TSS region transcription start site region 63265
Tssr58937 6 125231954 to 125231976 22 + TSS region transcription start site region 58937
Cd27 6 125232622 to 125237010 4388 - protein coding gene CD27 antigen
Tssr63266 6 125232922 to 125232934 12 - TSS region transcription start site region 63266
Tssr63267 6 125233024 to 125233037 13 - TSS region transcription start site region 63267
Tssr63268 6 125233055 to 125233065 10 - TSS region transcription start site region 63268
Tssr63269 6 125233124 to 125233138 14 - TSS region transcription start site region 63269
Mir8113 6 125234684 to 125234812 128 - miRNA gene microRNA 8113
Tssr63270 6 125234802 to 125234819 17 - TSS region transcription start site region 63270
Tssr58938 6 125235944 to 125235954 10 + TSS region transcription start site region 58938
Tssr58939 6 125236104 to 125236110 6 + TSS region transcription start site region 58939
Tssr63271 6 125236838 to 125236854 16 - TSS region transcription start site region 63271
Tssr63272 6 125236923 to 125236934 11 - TSS region transcription start site region 63272
Tssr63273 6 125236954 to 125236971 17 - TSS region transcription start site region 63273
Tssr63274 6 125236974 to 125236993 19 - TSS region transcription start site region 63274
Tssr63275 6 125236996 to 125237025 29 - TSS region transcription start site region 63275
Tssr2017 6 125237094 to 125237101 7 - TSS region transcription start site region 2017
Tssr58940 6 125237749 to 125237770 21 + TSS region transcription start site region 58940
Tssr63276 6 125241667 to 125241673 6 - TSS region transcription start site region 63276
Tssr58941 6 125241900 to 125241921 21 + TSS region transcription start site region 58941
Tssr58942 6 125241953 to 125241976 23 + TSS region transcription start site region 58942
Tssr63277 6 125254054 to 125254102 48 - TSS region transcription start site region 63277
Tssr63278 6 125254184 to 125254258 74 - TSS region transcription start site region 63278
Gm44259 6 125257711 to 125258008 297 - pseudogene predicted gene, 44259
Gm24175 6 125258049 to 125258177 128 - snoRNA gene predicted gene, 24175
Tssr63279 6 125265327 to 125265342 15 - TSS region transcription start site region 63279
Tssr63280 6 125265346 to 125265354 8 - TSS region transcription start site region 63280
Tssr58943 6 125265470 to 125265481 11 + TSS region transcription start site region 58943
Tssr58944 6 125265513 to 125265530 17 + TSS region transcription start site region 58944
4930417O13Rik 6 125265525 to 125273777 8252 + lncRNA gene RIKEN cDNA 4930417O13 gene
Tssr58945 6 125265538 to 125265545 7 + TSS region transcription start site region 58945
Tssr58946 6 125265558 to 125265585 27 + TSS region transcription start site region 58946
Tssr58947 6 125265587 to 125265598 11 + TSS region transcription start site region 58947
Tssr63281 6 125266105 to 125266147 42 - TSS region transcription start site region 63281
Tssr58948 6 125266240 to 125266252 12 + TSS region transcription start site region 58948
Tssr58949 6 125266263 to 125266283 20 + TSS region transcription start site region 58949
Tssr63282 6 125266462 to 125266471 9 - TSS region transcription start site region 63282
Tssr63283 6 125275940 to 125275943 3 - TSS region transcription start site region 63283
Tuba3a 6 125278274 to 125286042 7768 - protein coding gene tubulin, alpha 3A
Cpgi18000 6 125285765 to 125286421 656 CpG island CpG island 18000
Tssr63284 6 125286015 to 125286050 35 - TSS region transcription start site region 63284
Tssr63285 6 125286062 to 125286075 13 - TSS region transcription start site region 63285
Ltbr 6 125306571 to 125313870 7299 - protein coding gene lymphotoxin B receptor
D6Mit134 6 125308619 to 125308746 127 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 134
Tssr63286 6 125308768 to 125308782 14 - TSS region transcription start site region 63286
Tssr58950 6 125309688 to 125309724 36 + TSS region transcription start site region 58950
Tssr63287 6 125313054 to 125313083 29 - TSS region transcription start site region 63287
Cpgi18001 6 125313649 to 125314188 539 CpG island CpG island 18001
Tssr63288 6 125313698 to 125313723 25 - TSS region transcription start site region 63288
Tssr63289 6 125313796 to 125313805 9 - TSS region transcription start site region 63289
Tssr63290 6 125313825 to 125313836 11 - TSS region transcription start site region 63290
Tssr63291 6 125313844 to 125313878 34 - TSS region transcription start site region 63291
Tssr58951 6 125314001 to 125314054 53 + TSS region transcription start site region 58951