Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:125180460-125580502

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185 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tilss4 6 112269957 to 125356785 13086828 QTL TNF-induced lethal shock susceptibility 3
Ncapd2 6 125168007 to 125191701 23694 - protein coding gene non-SMC condensin I complex, subunit D2
Gm28967 6 125186361 to 125186641 280 - sense intronic lncRNA gene predicted gene 28967
Scarna10 6 125186361 to 125186431 70 - snoRNA gene small Cajal body-specific RNA 10
Tssr63254 6 125186675 to 125186688 13 - TSS region transcription start site region 63254
Tssr63255 6 125187106 to 125187146 40 - TSS region transcription start site region 63255
Cpgi17998 6 125191290 to 125192667 1377 CpG island CpG island 17998
Tssr63256 6 125191498 to 125191511 13 - TSS region transcription start site region 63256
Tssr63257 6 125191535 to 125191620 85 - TSS region transcription start site region 63257
Tssr63258 6 125191621 to 125191663 42 - TSS region transcription start site region 63258
Tssr2016 6 125191674 to 125191678 4 - TSS region transcription start site region 2016
Tssr58927 6 125191803 to 125191850 47 + TSS region transcription start site region 58927
Tssr63259 6 125192096 to 125192117 21 - TSS region transcription start site region 63259
Tssr58928 6 125192154 to 125192170 16 + TSS region transcription start site region 58928
Tssr58929 6 125192177 to 125192210 33 + TSS region transcription start site region 58929
Mrpl51 6 125192200 to 125194392 2192 + protein coding gene mitochondrial ribosomal protein L51
Mir3098 6 125195792 to 125195878 86 + miRNA gene microRNA 3098
Gm44487 6 125208367 to 125208691 324 - pseudogene predicted gene, 44487
Cpgi17999 6 125215308 to 125216053 745 CpG island CpG island 17999
Tssr58930 6 125215376 to 125215390 14 + TSS region transcription start site region 58930
Tssr58931 6 125215572 to 125215591 19 + TSS region transcription start site region 58931
Vamp1 6 125215581 to 125222306 6725 + protein coding gene vesicle-associated membrane protein 1
Tssr63260 6 125217332 to 125217341 9 - TSS region transcription start site region 63260
Tssr58932 6 125218981 to 125218994 13 + TSS region transcription start site region 58932
Tssr58933 6 125221724 to 125221735 11 + TSS region transcription start site region 58933
Tssr58934 6 125221825 to 125221841 16 + TSS region transcription start site region 58934
Tssr58935 6 125221889 to 125221903 14 + TSS region transcription start site region 58935
Tapbpl 6 125223933 to 125231860 7927 - protein coding gene TAP binding protein-like
Tssr63261 6 125231075 to 125231079 4 - TSS region transcription start site region 63261
Tssr63262 6 125231139 to 125231173 34 - TSS region transcription start site region 63262
Tssr58936 6 125231255 to 125231285 30 + TSS region transcription start site region 58936
E130112N10Rik 6 125231276 to 125239934 8658 + lncRNA gene RIKEN cDNA E130112N10 gene
Tssr63263 6 125231648 to 125231689 41 - TSS region transcription start site region 63263
Tssr63264 6 125231702 to 125231737 35 - TSS region transcription start site region 63264
Tssr63265 6 125231772 to 125231824 52 - TSS region transcription start site region 63265
Tssr58937 6 125231954 to 125231976 22 + TSS region transcription start site region 58937
Cd27 6 125232622 to 125237010 4388 - protein coding gene CD27 antigen
Tssr63266 6 125232922 to 125232934 12 - TSS region transcription start site region 63266
Tssr63267 6 125233024 to 125233037 13 - TSS region transcription start site region 63267
Tssr63268 6 125233055 to 125233065 10 - TSS region transcription start site region 63268
Tssr63269 6 125233124 to 125233138 14 - TSS region transcription start site region 63269
Mir8113 6 125234684 to 125234812 128 - miRNA gene microRNA 8113
Tssr63270 6 125234802 to 125234819 17 - TSS region transcription start site region 63270
Tssr58938 6 125235944 to 125235954 10 + TSS region transcription start site region 58938
Tssr58939 6 125236104 to 125236110 6 + TSS region transcription start site region 58939
Tssr63271 6 125236838 to 125236854 16 - TSS region transcription start site region 63271
Tssr63272 6 125236923 to 125236934 11 - TSS region transcription start site region 63272
Tssr63273 6 125236954 to 125236971 17 - TSS region transcription start site region 63273
Tssr63274 6 125236974 to 125236993 19 - TSS region transcription start site region 63274
Tssr63275 6 125236996 to 125237025 29 - TSS region transcription start site region 63275
Tssr2017 6 125237094 to 125237101 7 - TSS region transcription start site region 2017
Tssr58940 6 125237749 to 125237770 21 + TSS region transcription start site region 58940
Tssr63276 6 125241667 to 125241673 6 - TSS region transcription start site region 63276
Tssr58941 6 125241900 to 125241921 21 + TSS region transcription start site region 58941
Tssr58942 6 125241953 to 125241976 23 + TSS region transcription start site region 58942
Tssr63277 6 125254054 to 125254102 48 - TSS region transcription start site region 63277
Tssr63278 6 125254184 to 125254258 74 - TSS region transcription start site region 63278
Gm44259 6 125257711 to 125258008 297 - pseudogene predicted gene, 44259
Gm24175 6 125258049 to 125258177 128 - snoRNA gene predicted gene, 24175
Tssr63279 6 125265327 to 125265342 15 - TSS region transcription start site region 63279
Tssr63280 6 125265346 to 125265354 8 - TSS region transcription start site region 63280
Tssr58943 6 125265470 to 125265481 11 + TSS region transcription start site region 58943
Tssr58944 6 125265513 to 125265530 17 + TSS region transcription start site region 58944
4930417O13Rik 6 125265525 to 125273777 8252 + lncRNA gene RIKEN cDNA 4930417O13 gene
Tssr58945 6 125265538 to 125265545 7 + TSS region transcription start site region 58945
Tssr58946 6 125265558 to 125265585 27 + TSS region transcription start site region 58946
Tssr58947 6 125265587 to 125265598 11 + TSS region transcription start site region 58947
Tssr63281 6 125266105 to 125266147 42 - TSS region transcription start site region 63281
Tssr58948 6 125266240 to 125266252 12 + TSS region transcription start site region 58948
Tssr58949 6 125266263 to 125266283 20 + TSS region transcription start site region 58949
Tssr63282 6 125266462 to 125266471 9 - TSS region transcription start site region 63282
Tssr63283 6 125275940 to 125275943 3 - TSS region transcription start site region 63283
Tuba3a 6 125278274 to 125286042 7768 - protein coding gene tubulin, alpha 3A
Cpgi18000 6 125285765 to 125286421 656 CpG island CpG island 18000
Tssr63284 6 125286015 to 125286050 35 - TSS region transcription start site region 63284
Tssr63285 6 125286062 to 125286075 13 - TSS region transcription start site region 63285
Ltbr 6 125306571 to 125313870 7299 - protein coding gene lymphotoxin B receptor
D6Mit134 6 125308619 to 125308746 127 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 134
Tssr63286 6 125308768 to 125308782 14 - TSS region transcription start site region 63286
Tssr58950 6 125309688 to 125309724 36 + TSS region transcription start site region 58950
Tssr63287 6 125313054 to 125313083 29 - TSS region transcription start site region 63287
Cpgi18001 6 125313649 to 125314188 539 CpG island CpG island 18001
Tssr63288 6 125313698 to 125313723 25 - TSS region transcription start site region 63288
Tssr63289 6 125313796 to 125313805 9 - TSS region transcription start site region 63289
Tssr63290 6 125313825 to 125313836 11 - TSS region transcription start site region 63290
Tssr63291 6 125313844 to 125313878 34 - TSS region transcription start site region 63291
Tssr58951 6 125314001 to 125314054 53 + TSS region transcription start site region 58951
D6Mit217 6 125318823 to 125319007 184 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 217
Tssr58952 6 125320633 to 125320639 6 + TSS region transcription start site region 58952
Scnn1a 6 125321052 to 125344943 23891 + protein coding gene sodium channel, nonvoltage-gated 1 alpha
Tssr58953 6 125321223 to 125321237 14 + TSS region transcription start site region 58953
Tssr58954 6 125321258 to 125321273 15 + TSS region transcription start site region 58954
Tssr58955 6 125321333 to 125321360 27 + TSS region transcription start site region 58955
Tssr58956 6 125321390 to 125321406 16 + TSS region transcription start site region 58956
Tssr58957 6 125321409 to 125321420 11 + TSS region transcription start site region 58957
Cpgi18002 6 125321559 to 125322322 763 CpG island CpG island 18002
Tssr2018 6 125321812 to 125321833 21 + TSS region transcription start site region 2018
Tssr58958 6 125321858 to 125321869 11 + TSS region transcription start site region 58958
Tssr58959 6 125322879 to 125322892 13 + TSS region transcription start site region 58959
Tssr58960 6 125322906 to 125322913 7 + TSS region transcription start site region 58960
Cpgi18003 6 125330927 to 125331305 378 CpG island CpG island 18003
Tssr58961 6 125337794 to 125337813 19 + TSS region transcription start site region 58961
Tssr2019 6 125337859 to 125337868 9 + TSS region transcription start site region 2019
Tssr58962 6 125342503 to 125342518 15 + TSS region transcription start site region 58962
Tssr58963 6 125342528 to 125342545 17 + TSS region transcription start site region 58963
Tssr58964 6 125342762 to 125342773 11 + TSS region transcription start site region 58964
Tssr58965 6 125342779 to 125342819 40 + TSS region transcription start site region 58965
Tssr63292 6 125344394 to 125344407 13 - TSS region transcription start site region 63292
Tssr58966 6 125345199 to 125345208 9 + TSS region transcription start site region 58966
Tssr58967 6 125345805 to 125345810 5 + TSS region transcription start site region 58967
Cpgi18004 6 125349269 to 125350046 777 CpG island CpG island 18004
Tssr58968 6 125349699 to 125349775 76 + TSS region transcription start site region 58968
Hrl 6 125349723 to 125362483 12760 QTL herpes resistance locus
Tnfrsf1a 6 125349723 to 125362483 12760 + protein coding gene tumor necrosis factor receptor superfamily, member 1a
Cms2 6 125349723 to 125362483 12760 QTL resistance to Coccidioides immitis 2
Tssr58969 6 125349776 to 125349787 11 + TSS region transcription start site region 58969
Tssr58970 6 125349791 to 125349805 14 + TSS region transcription start site region 58970
Tssr58971 6 125349807 to 125349820 13 + TSS region transcription start site region 58971
Tssr2020 6 125350549 to 125350570 21 - TSS region transcription start site region 2020
Tssr63293 6 125351400 to 125351422 22 - TSS region transcription start site region 63293
Btts 6 125356646 to 134119623 8762977 QTL bitterness tasting
D6Mit254 6 125356646 to 125356785 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 254
Eila2 6 125356785 to 48726556 -76630229 QTL ethanol induced locomotor activity 2
Tssr58972 6 125361297 to 125361335 38 + TSS region transcription start site region 58972
Cpgi18005 6 125361470 to 125362153 683 CpG island CpG island 18005
Tssr58973 6 125361944 to 125361975 31 + TSS region transcription start site region 58973
Plekhg6 6 125362660 to 125380793 18133 - protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 6
Cpgi18006 6 125363369 to 125363656 287 CpG island CpG island 18006
Tssr63294 6 125379890 to 125379917 27 - TSS region transcription start site region 63294
Cpgi18007 6 125380250 to 125380899 649 CpG island CpG island 18007
Tssr63295 6 125380460 to 125380502 42 - TSS region transcription start site region 63295
Tssr63296 6 125380503 to 125380526 23 - TSS region transcription start site region 63296
Tssr58974 6 125411307 to 125411335 28 + TSS region transcription start site region 58974
D6Jpk2 6 125418005 to 125418132 127 DNA segment DNA segment, Chr 6, Japan, Kominami 2
Tssr2021 6 125425443 to 125425475 32 - TSS region transcription start site region 2021
Cpgi18008 6 125426458 to 125426751 293 CpG island CpG island 18008
Gm32673 6 125430930 to 125460475 29545 + lncRNA gene predicted gene, 32673
Tssr58975 6 125432662 to 125432674 12 + TSS region transcription start site region 58975
Tssr58976 6 125432679 to 125432690 11 + TSS region transcription start site region 58976
Tssr58977 6 125432700 to 125432724 24 + TSS region transcription start site region 58977
Tssr58978 6 125432731 to 125432752 21 + TSS region transcription start site region 58978
Tssr58979 6 125432773 to 125432784 11 + TSS region transcription start site region 58979
Tssr58980 6 125434327 to 125434332 5 + TSS region transcription start site region 58980
Cd9 6 125460266 to 125494755 34489 - protein coding gene CD9 antigen
Tssr63297 6 125460588 to 125460599 11 - TSS region transcription start site region 63297
Tssr63298 6 125460605 to 125460615 10 - TSS region transcription start site region 63298
Tssr63299 6 125460630 to 125460641 11 - TSS region transcription start site region 63299
Tssr63300 6 125460656 to 125460668 12 - TSS region transcription start site region 63300
Tssr63301 6 125462155 to 125462179 24 - TSS region transcription start site region 63301
Tssr63302 6 125463711 to 125463743 32 - TSS region transcription start site region 63302
Cpgi18009 6 125467273 to 125467499 226 CpG island CpG island 18009
Tssr63303 6 125468325 to 125468332 7 - TSS region transcription start site region 63303
Gm28809 6 125481363 to 125484678 3315 + antisense lncRNA gene predicted gene 28809
Tssr63304 6 125481715 to 125481725 10 - TSS region transcription start site region 63304
Tssr63305 6 125481768 to 125481773 5 - TSS region transcription start site region 63305
Tssr63306 6 125481779 to 125481788 9 - TSS region transcription start site region 63306
Tssr63307 6 125481814 to 125481822 8 - TSS region transcription start site region 63307
Tssr63308 6 125481829 to 125481837 8 - TSS region transcription start site region 63308
Tssr58981 6 125481925 to 125481949 24 + TSS region transcription start site region 58981
Tssr58982 6 125481968 to 125481979 11 + TSS region transcription start site region 58982
Tssr58983 6 125482524 to 125482549 25 + TSS region transcription start site region 58983
Tssr63309 6 125483498 to 125483508 10 - TSS region transcription start site region 63309
Tssr63310 6 125483511 to 125483525 14 - TSS region transcription start site region 63310
Tssr58984 6 125483653 to 125483699 46 + TSS region transcription start site region 58984
Gm38549 6 125493038 to 125499609 6571 + lncRNA gene predicted gene, 38549
Tssr58985 6 125493312 to 125493332 20 + TSS region transcription start site region 58985
Cpgi18010 6 125494038 to 125495113 1075 CpG island CpG island 18010
Tssr58986 6 125494419 to 125494454 35 + TSS region transcription start site region 58986
Tssr63311 6 125494638 to 125494669 31 - TSS region transcription start site region 63311
Tssr63312 6 125494706 to 125494748 42 - TSS region transcription start site region 63312
Tssr63313 6 125494754 to 125494765 11 - TSS region transcription start site region 63313
Tssr58987 6 125494869 to 125494904 35 + TSS region transcription start site region 58987
Gm26728 6 125499647 to 125509830 10183 + lncRNA gene predicted gene, 26728
Tssr58988 6 125532552 to 125532559 7 + TSS region transcription start site region 58988
Tssr58989 6 125532592 to 125532603 11 + TSS region transcription start site region 58989
Tssr63314 6 125533348 to 125533357 9 - TSS region transcription start site region 63314
Tssr58990 6 125538734 to 125538741 7 + TSS region transcription start site region 58990
Tssr58991 6 125539708 to 125539716 8 + TSS region transcription start site region 58991
Tssr63315 6 125540302 to 125540322 20 - TSS region transcription start site region 63315
Gm33144 6 125542652 to 125546613 3961 + lncRNA gene predicted gene, 33144
Tssr58992 6 125552933 to 125552938 5 + TSS region transcription start site region 58992
Vwf 6 125552935 to 125686679 133744 + protein coding gene Von Willebrand factor
Tssr58993 6 125552953 to 125552980 27 + TSS region transcription start site region 58993
Tssr58994 6 125565585 to 125565597 12 + TSS region transcription start site region 58994
Tssr63316 6 125573318 to 125573345 27 - TSS region transcription start site region 63316