Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:125096954-125376971

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tilss4 6 112269957 to 125356785 13086828 QTL TNF-induced lethal shock susceptibility 3
Gm32616 6 125091244 to 125097798 6554 - lncRNA gene predicted gene, 32616
Cpgi17993 6 125095808 to 125097645 1837 CpG island CpG island 17993
Chd4 6 125095986 to 125130591 34605 + protein coding gene chromodomain helicase DNA binding protein 4
Mir7045 6 125097024 to 125097086 62 + miRNA gene microRNA 7045
Tssr58912 6 125097077 to 125097109 32 + TSS region transcription start site region 58912
Tssr58913 6 125100868 to 125100882 14 + TSS region transcription start site region 58913
Tssr58914 6 125103430 to 125103438 8 + TSS region transcription start site region 58914
Tssr58915 6 125113511 to 125113540 29 + TSS region transcription start site region 58915
Tssr58916 6 125113895 to 125113912 17 + TSS region transcription start site region 58916
Gm23751 6 125121724 to 125121859 135 + snoRNA gene predicted gene, 23751
Tssr58917 6 125122470 to 125122504 34 + TSS region transcription start site region 58917
Tssr58918 6 125129863 to 125129872 9 + TSS region transcription start site region 58918
Tssr58919 6 125130470 to 125130473 3 + TSS region transcription start site region 58919
Cpgi17994 6 125131301 to 125132618 1317 CpG island CpG island 17994
Tssr63243 6 125131757 to 125131770 13 - TSS region transcription start site region 63243
Tssr63244 6 125131786 to 125131819 33 - TSS region transcription start site region 63244
Tssr58920 6 125131869 to 125131953 84 + TSS region transcription start site region 58920
Nop2 6 125131909 to 125144753 12844 + protein coding gene NOP2 nucleolar protein
Tssr58921 6 125136677 to 125136681 4 + TSS region transcription start site region 58921
Cpgi17995 6 125145165 to 125146102 937 CpG island CpG island 17995
Tssr58922 6 125145210 to 125145234 24 + TSS region transcription start site region 58922
Tssr58923 6 125145235 to 125145250 15 + TSS region transcription start site region 58923
Iffo1 6 125145241 to 125161782 16541 + protein coding gene intermediate filament family orphan 1
Tssr58924 6 125145259 to 125145278 19 + TSS region transcription start site region 58924
Tssr58925 6 125145295 to 125145298 3 + TSS region transcription start site region 58925
Tssr58926 6 125145400 to 125145413 13 + TSS region transcription start site region 58926
Cpgi17996 6 125148794 to 125148976 182 CpG island CpG island 17996
Gapdh 6 125161721 to 125166467 4746 - protein coding gene glyceraldehyde-3-phosphate dehydrogenase
Tssr63245 6 125164089 to 125164106 17 - TSS region transcription start site region 63245
Cpgi17997 6 125164878 to 125165903 1025 CpG island CpG island 17997
Tssr63246 6 125165317 to 125165334 17 - TSS region transcription start site region 63246
Tssr63247 6 125165349 to 125165352 3 - TSS region transcription start site region 63247
Tssr63248 6 125165594 to 125165612 18 - TSS region transcription start site region 63248
Tssr63249 6 125165707 to 125165766 59 - TSS region transcription start site region 63249
Tssr63250 6 125166463 to 125166499 36 - TSS region transcription start site region 63250
Ncapd2 6 125168007 to 125191701 23694 - protein coding gene non-SMC condensin I complex, subunit D2
Tssr63251 6 125168986 to 125169000 14 - TSS region transcription start site region 63251
Tssr63252 6 125170787 to 125170824 37 - TSS region transcription start site region 63252
Tssr63253 6 125172055 to 125172064 9 - TSS region transcription start site region 63253
Gm28967 6 125186361 to 125186641 280 - sense intronic lncRNA gene predicted gene 28967
Scarna10 6 125186361 to 125186431 70 - snoRNA gene small Cajal body-specific RNA 10
Tssr63254 6 125186675 to 125186688 13 - TSS region transcription start site region 63254
Tssr63255 6 125187106 to 125187146 40 - TSS region transcription start site region 63255
Cpgi17998 6 125191290 to 125192667 1377 CpG island CpG island 17998
Tssr63256 6 125191498 to 125191511 13 - TSS region transcription start site region 63256
Tssr63257 6 125191535 to 125191620 85 - TSS region transcription start site region 63257
Tssr63258 6 125191621 to 125191663 42 - TSS region transcription start site region 63258
Tssr2016 6 125191674 to 125191678 4 - TSS region transcription start site region 2016
Tssr58927 6 125191803 to 125191850 47 + TSS region transcription start site region 58927
Tssr63259 6 125192096 to 125192117 21 - TSS region transcription start site region 63259
Tssr58928 6 125192154 to 125192170 16 + TSS region transcription start site region 58928
Tssr58929 6 125192177 to 125192210 33 + TSS region transcription start site region 58929
Mrpl51 6 125192200 to 125194392 2192 + protein coding gene mitochondrial ribosomal protein L51
Mir3098 6 125195792 to 125195878 86 + miRNA gene microRNA 3098
Gm44487 6 125208367 to 125208691 324 - pseudogene predicted gene, 44487
Cpgi17999 6 125215308 to 125216053 745 CpG island CpG island 17999
Tssr58930 6 125215376 to 125215390 14 + TSS region transcription start site region 58930
Tssr58931 6 125215572 to 125215591 19 + TSS region transcription start site region 58931
Vamp1 6 125215581 to 125222306 6725 + protein coding gene vesicle-associated membrane protein 1
Tssr63260 6 125217332 to 125217341 9 - TSS region transcription start site region 63260
Tssr58932 6 125218981 to 125218994 13 + TSS region transcription start site region 58932
Tssr58933 6 125221724 to 125221735 11 + TSS region transcription start site region 58933
Tssr58934 6 125221825 to 125221841 16 + TSS region transcription start site region 58934
Tssr58935 6 125221889 to 125221903 14 + TSS region transcription start site region 58935
Tapbpl 6 125223933 to 125231860 7927 - protein coding gene TAP binding protein-like
Tssr63261 6 125231075 to 125231079 4 - TSS region transcription start site region 63261
Tssr63262 6 125231139 to 125231173 34 - TSS region transcription start site region 63262
Tssr58936 6 125231255 to 125231285 30 + TSS region transcription start site region 58936
E130112N10Rik 6 125231276 to 125239934 8658 + lncRNA gene RIKEN cDNA E130112N10 gene
Tssr63263 6 125231648 to 125231689 41 - TSS region transcription start site region 63263
Tssr63264 6 125231702 to 125231737 35 - TSS region transcription start site region 63264
Tssr63265 6 125231772 to 125231824 52 - TSS region transcription start site region 63265
Tssr58937 6 125231954 to 125231976 22 + TSS region transcription start site region 58937
Cd27 6 125232622 to 125237010 4388 - protein coding gene CD27 antigen
Tssr63266 6 125232922 to 125232934 12 - TSS region transcription start site region 63266
Tssr63267 6 125233024 to 125233037 13 - TSS region transcription start site region 63267
Tssr63268 6 125233055 to 125233065 10 - TSS region transcription start site region 63268
Tssr63269 6 125233124 to 125233138 14 - TSS region transcription start site region 63269
Mir8113 6 125234684 to 125234812 128 - miRNA gene microRNA 8113
Tssr63270 6 125234802 to 125234819 17 - TSS region transcription start site region 63270
Tssr58938 6 125235944 to 125235954 10 + TSS region transcription start site region 58938
Tssr58939 6 125236104 to 125236110 6 + TSS region transcription start site region 58939
Tssr63271 6 125236838 to 125236854 16 - TSS region transcription start site region 63271
Tssr63272 6 125236923 to 125236934 11 - TSS region transcription start site region 63272
Tssr63273 6 125236954 to 125236971 17 - TSS region transcription start site region 63273
Tssr63274 6 125236974 to 125236993 19 - TSS region transcription start site region 63274
Tssr63275 6 125236996 to 125237025 29 - TSS region transcription start site region 63275
Tssr2017 6 125237094 to 125237101 7 - TSS region transcription start site region 2017
Tssr58940 6 125237749 to 125237770 21 + TSS region transcription start site region 58940
Tssr63276 6 125241667 to 125241673 6 - TSS region transcription start site region 63276
Tssr58941 6 125241900 to 125241921 21 + TSS region transcription start site region 58941
Tssr58942 6 125241953 to 125241976 23 + TSS region transcription start site region 58942
Tssr63277 6 125254054 to 125254102 48 - TSS region transcription start site region 63277
Tssr63278 6 125254184 to 125254258 74 - TSS region transcription start site region 63278
Gm44259 6 125257711 to 125258008 297 - pseudogene predicted gene, 44259
Gm24175 6 125258049 to 125258177 128 - snoRNA gene predicted gene, 24175
Tssr63279 6 125265327 to 125265342 15 - TSS region transcription start site region 63279
Tssr63280 6 125265346 to 125265354 8 - TSS region transcription start site region 63280
Tssr58943 6 125265470 to 125265481 11 + TSS region transcription start site region 58943
Tssr58944 6 125265513 to 125265530 17 + TSS region transcription start site region 58944
4930417O13Rik 6 125265525 to 125273777 8252 + lncRNA gene RIKEN cDNA 4930417O13 gene
Tssr58945 6 125265538 to 125265545 7 + TSS region transcription start site region 58945
Tssr58946 6 125265558 to 125265585 27 + TSS region transcription start site region 58946
Tssr58947 6 125265587 to 125265598 11 + TSS region transcription start site region 58947
Tssr63281 6 125266105 to 125266147 42 - TSS region transcription start site region 63281
Tssr58948 6 125266240 to 125266252 12 + TSS region transcription start site region 58948
Tssr58949 6 125266263 to 125266283 20 + TSS region transcription start site region 58949
Tssr63282 6 125266462 to 125266471 9 - TSS region transcription start site region 63282
Tssr63283 6 125275940 to 125275943 3 - TSS region transcription start site region 63283
Tuba3a 6 125278274 to 125286042 7768 - protein coding gene tubulin, alpha 3A
Cpgi18000 6 125285765 to 125286421 656 CpG island CpG island 18000
Tssr63284 6 125286015 to 125286050 35 - TSS region transcription start site region 63284
Tssr63285 6 125286062 to 125286075 13 - TSS region transcription start site region 63285
Ltbr 6 125306571 to 125313870 7299 - protein coding gene lymphotoxin B receptor
D6Mit134 6 125308619 to 125308746 127 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 134
Tssr63286 6 125308768 to 125308782 14 - TSS region transcription start site region 63286
Tssr58950 6 125309688 to 125309724 36 + TSS region transcription start site region 58950
Tssr63287 6 125313054 to 125313083 29 - TSS region transcription start site region 63287
Cpgi18001 6 125313649 to 125314188 539 CpG island CpG island 18001
Tssr63288 6 125313698 to 125313723 25 - TSS region transcription start site region 63288
Tssr63289 6 125313796 to 125313805 9 - TSS region transcription start site region 63289
Tssr63290 6 125313825 to 125313836 11 - TSS region transcription start site region 63290
Tssr63291 6 125313844 to 125313878 34 - TSS region transcription start site region 63291
Tssr58951 6 125314001 to 125314054 53 + TSS region transcription start site region 58951
D6Mit217 6 125318823 to 125319007 184 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 217
Tssr58952 6 125320633 to 125320639 6 + TSS region transcription start site region 58952
Scnn1a 6 125321052 to 125344943 23891 + protein coding gene sodium channel, nonvoltage-gated 1 alpha
Tssr58953 6 125321223 to 125321237 14 + TSS region transcription start site region 58953
Tssr58954 6 125321258 to 125321273 15 + TSS region transcription start site region 58954
Tssr58955 6 125321333 to 125321360 27 + TSS region transcription start site region 58955
Tssr58956 6 125321390 to 125321406 16 + TSS region transcription start site region 58956
Tssr58957 6 125321409 to 125321420 11 + TSS region transcription start site region 58957
Cpgi18002 6 125321559 to 125322322 763 CpG island CpG island 18002
Tssr2018 6 125321812 to 125321833 21 + TSS region transcription start site region 2018
Tssr58958 6 125321858 to 125321869 11 + TSS region transcription start site region 58958
Tssr58959 6 125322879 to 125322892 13 + TSS region transcription start site region 58959
Tssr58960 6 125322906 to 125322913 7 + TSS region transcription start site region 58960
Cpgi18003 6 125330927 to 125331305 378 CpG island CpG island 18003
Tssr58961 6 125337794 to 125337813 19 + TSS region transcription start site region 58961
Tssr2019 6 125337859 to 125337868 9 + TSS region transcription start site region 2019
Tssr58962 6 125342503 to 125342518 15 + TSS region transcription start site region 58962
Tssr58963 6 125342528 to 125342545 17 + TSS region transcription start site region 58963
Tssr58964 6 125342762 to 125342773 11 + TSS region transcription start site region 58964
Tssr58965 6 125342779 to 125342819 40 + TSS region transcription start site region 58965
Tssr63292 6 125344394 to 125344407 13 - TSS region transcription start site region 63292
Tssr58966 6 125345199 to 125345208 9 + TSS region transcription start site region 58966
Tssr58967 6 125345805 to 125345810 5 + TSS region transcription start site region 58967
Cpgi18004 6 125349269 to 125350046 777 CpG island CpG island 18004
Tssr58968 6 125349699 to 125349775 76 + TSS region transcription start site region 58968
Tnfrsf1a 6 125349723 to 125362483 12760 + protein coding gene tumor necrosis factor receptor superfamily, member 1a
Hrl 6 125349723 to 125362483 12760 QTL herpes resistance locus
Cms2 6 125349723 to 125362483 12760 QTL resistance to Coccidioides immitis 2
Tssr58969 6 125349776 to 125349787 11 + TSS region transcription start site region 58969
Tssr58970 6 125349791 to 125349805 14 + TSS region transcription start site region 58970
Tssr58971 6 125349807 to 125349820 13 + TSS region transcription start site region 58971
Tssr2020 6 125350549 to 125350570 21 - TSS region transcription start site region 2020
Tssr63293 6 125351400 to 125351422 22 - TSS region transcription start site region 63293
Btts 6 125356646 to 134119623 8762977 QTL bitterness tasting
D6Mit254 6 125356646 to 125356785 139 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 254
Eila2 6 125356785 to 48726556 -76630229 QTL ethanol induced locomotor activity 2
Tssr58972 6 125361297 to 125361335 38 + TSS region transcription start site region 58972
Cpgi18005 6 125361470 to 125362153 683 CpG island CpG island 18005
Tssr58973 6 125361944 to 125361975 31 + TSS region transcription start site region 58973
Plekhg6 6 125362660 to 125380793 18133 - protein coding gene pleckstrin homology domain containing, family G (with RhoGef domain) member 6
Cpgi18006 6 125363369 to 125363656 287 CpG island CpG island 18006