Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:124982077-125212109

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm40398 6 124981126 to 124997204 16078 - lncRNA gene predicted gene, 40398
Cpgi17985 6 124996439 to 124997614 1175 CpG island CpG island 17985
Tssr58877 6 124996681 to 124996756 75 + TSS region transcription start site region 58877
Pianp 6 124996720 to 125003096 6376 + protein coding gene PILR alpha associated neural protein
Tssr2014 6 124996767 to 124996781 14 + TSS region transcription start site region 2014
Tssr58878 6 124996791 to 124996842 51 + TSS region transcription start site region 58878
Tssr58879 6 124997047 to 124997059 12 + TSS region transcription start site region 58879
Tssr58880 6 124997062 to 124997082 20 + TSS region transcription start site region 58880
Tssr58881 6 124997090 to 124997112 22 + TSS region transcription start site region 58881
Tssr63240 6 124997389 to 124997416 27 - TSS region transcription start site region 63240
Cpgi17986 6 124999393 to 124999671 278 CpG island CpG island 17986
Tssr58882 6 125002082 to 125002096 14 + TSS region transcription start site region 58882
Tssr58883 6 125002170 to 125002182 12 + TSS region transcription start site region 58883
Tssr58884 6 125002771 to 125002789 18 + TSS region transcription start site region 58884
Tssr58885 6 125002847 to 125002888 41 + TSS region transcription start site region 58885
D6Mit255 6 125006127 to 125006400 273 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 255
Cpgi17987 6 125008656 to 125010127 1471 CpG island CpG island 17987
Tssr58886 6 125008998 to 125009043 45 + TSS region transcription start site region 58886
Tssr58887 6 125009113 to 125009142 29 + TSS region transcription start site region 58887
Zfp384 6 125009162 to 125037870 28708 + protein coding gene zinc finger protein 384
Tssr58888 6 125009232 to 125009253 21 + TSS region transcription start site region 58888
Tssr58889 6 125009261 to 125009317 56 + TSS region transcription start site region 58889
Tssr63241 6 125009601 to 125009637 36 - TSS region transcription start site region 63241
Tssr58890 6 125009665 to 125009717 52 + TSS region transcription start site region 58890
4930557K07Rik 6 125010176 to 125049853 39677 - antisense lncRNA gene RIKEN cDNA 4930557K07 gene
Cpgi17988 6 125039546 to 125039833 287 CpG island CpG island 17988
Gm44597 6 125039816 to 125051542 11726 + unclassified non-coding RNA gene predicted gene 44597
Tssr58891 6 125039830 to 125039859 29 + TSS region transcription start site region 58891
Ing4 6 125039848 to 125049264 9416 + protein coding gene inhibitor of growth family, member 4
Acigg2 6 125048587 to 144315227 19266640 QTL anti COL7 IgG1 antibody 2
Cpgi17989 6 125049752 to 125050098 346 CpG island CpG island 17989
Tssr63242 6 125049843 to 125049858 15 - TSS region transcription start site region 63242
Tssr58892 6 125049903 to 125049947 44 + TSS region transcription start site region 58892
Acrbp 6 125049927 to 125063265 13338 + protein coding gene proacrosin binding protein
Tssr58893 6 125049952 to 125049971 19 + TSS region transcription start site region 58893
Tssr58894 6 125049972 to 125049986 14 + TSS region transcription start site region 58894
Cpgi17990 6 125050469 to 125050638 169 CpG island CpG island 17990
Tssr58895 6 125067673 to 125067686 13 + TSS region transcription start site region 58895
Tssr58896 6 125067688 to 125067699 11 + TSS region transcription start site region 58896
Tssr58897 6 125067913 to 125067942 29 + TSS region transcription start site region 58897
Lpar5 6 125067920 to 125082472 14552 + protein coding gene lysophosphatidic acid receptor 5
Tssr58898 6 125067952 to 125067955 3 + TSS region transcription start site region 58898
Tssr58899 6 125071267 to 125071289 22 + TSS region transcription start site region 58899
Tssr58900 6 125071292 to 125071305 13 + TSS region transcription start site region 58900
Tssr58901 6 125071326 to 125071345 19 + TSS region transcription start site region 58901
Cpgi17991 6 125071385 to 125071639 254 CpG island CpG island 17991
Cpgi17992 6 125081420 to 125082449 1029 CpG island CpG island 17992
Tssr58902 6 125083173 to 125083184 11 + TSS region transcription start site region 58902
Tssr58903 6 125083228 to 125083240 12 + TSS region transcription start site region 58903
Tssr58904 6 125083252 to 125083263 11 + TSS region transcription start site region 58904
Tssr58905 6 125083421 to 125083441 20 + TSS region transcription start site region 58905
2010008C14Rik 6 125083437 to 125084029 592 + unclassified gene RIKEN cDNA 2010008C14 gene
9130201A16Rik 6 125084866 to 125085850 984 unclassified gene RIKEN cDNA 9130201A16 gene
Gm32616 6 125091244 to 125097798 6554 - lncRNA gene predicted gene, 32616
Cpgi17993 6 125095808 to 125097645 1837 CpG island CpG island 17993
Chd4 6 125095986 to 125130591 34605 + protein coding gene chromodomain helicase DNA binding protein 4
Tssr2015 6 125096010 to 125096036 26 + TSS region transcription start site region 2015
Tssr58906 6 125096132 to 125096141 9 + TSS region transcription start site region 58906
Tssr58907 6 125096145 to 125096158 13 + TSS region transcription start site region 58907
Tssr58908 6 125096169 to 125096189 20 + TSS region transcription start site region 58908
Tssr58909 6 125096744 to 125096773 29 + TSS region transcription start site region 58909
Tssr58910 6 125096786 to 125096799 13 + TSS region transcription start site region 58910
Tssr58911 6 125096808 to 125096840 32 + TSS region transcription start site region 58911
Mir7045 6 125097024 to 125097086 62 + miRNA gene microRNA 7045
Tssr58912 6 125097077 to 125097109 32 + TSS region transcription start site region 58912
Tssr58913 6 125100868 to 125100882 14 + TSS region transcription start site region 58913
Tssr58914 6 125103430 to 125103438 8 + TSS region transcription start site region 58914
Tssr58915 6 125113511 to 125113540 29 + TSS region transcription start site region 58915
Tssr58916 6 125113895 to 125113912 17 + TSS region transcription start site region 58916
Gm23751 6 125121724 to 125121859 135 + snoRNA gene predicted gene, 23751
Tssr58917 6 125122470 to 125122504 34 + TSS region transcription start site region 58917
Tssr58918 6 125129863 to 125129872 9 + TSS region transcription start site region 58918
Tssr58919 6 125130470 to 125130473 3 + TSS region transcription start site region 58919
Cpgi17994 6 125131301 to 125132618 1317 CpG island CpG island 17994
Tssr63243 6 125131757 to 125131770 13 - TSS region transcription start site region 63243
Tssr63244 6 125131786 to 125131819 33 - TSS region transcription start site region 63244
Tssr58920 6 125131869 to 125131953 84 + TSS region transcription start site region 58920
Nop2 6 125131909 to 125144753 12844 + protein coding gene NOP2 nucleolar protein
Tssr58921 6 125136677 to 125136681 4 + TSS region transcription start site region 58921
Cpgi17995 6 125145165 to 125146102 937 CpG island CpG island 17995
Tssr58922 6 125145210 to 125145234 24 + TSS region transcription start site region 58922
Tssr58923 6 125145235 to 125145250 15 + TSS region transcription start site region 58923
Iffo1 6 125145241 to 125161782 16541 + protein coding gene intermediate filament family orphan 1
Tssr58924 6 125145259 to 125145278 19 + TSS region transcription start site region 58924
Tssr58925 6 125145295 to 125145298 3 + TSS region transcription start site region 58925
Tssr58926 6 125145400 to 125145413 13 + TSS region transcription start site region 58926
Cpgi17996 6 125148794 to 125148976 182 CpG island CpG island 17996
Gapdh 6 125161721 to 125166467 4746 - protein coding gene glyceraldehyde-3-phosphate dehydrogenase
Tssr63245 6 125164089 to 125164106 17 - TSS region transcription start site region 63245
Cpgi17997 6 125164878 to 125165903 1025 CpG island CpG island 17997
Tssr63246 6 125165317 to 125165334 17 - TSS region transcription start site region 63246
Tssr63247 6 125165349 to 125165352 3 - TSS region transcription start site region 63247
Tssr63248 6 125165594 to 125165612 18 - TSS region transcription start site region 63248
Tssr63249 6 125165707 to 125165766 59 - TSS region transcription start site region 63249
Tssr63250 6 125166463 to 125166499 36 - TSS region transcription start site region 63250
Ncapd2 6 125168007 to 125191701 23694 - protein coding gene non-SMC condensin I complex, subunit D2
Tssr63251 6 125168986 to 125169000 14 - TSS region transcription start site region 63251
Tssr63252 6 125170787 to 125170824 37 - TSS region transcription start site region 63252
Tssr63253 6 125172055 to 125172064 9 - TSS region transcription start site region 63253
Gm28967 6 125186361 to 125186641 280 - sense intronic lncRNA gene predicted gene 28967
Scarna10 6 125186361 to 125186431 70 - snoRNA gene small Cajal body-specific RNA 10
Tssr63254 6 125186675 to 125186688 13 - TSS region transcription start site region 63254
Tssr63255 6 125187106 to 125187146 40 - TSS region transcription start site region 63255
Cpgi17998 6 125191290 to 125192667 1377 CpG island CpG island 17998
Tssr63256 6 125191498 to 125191511 13 - TSS region transcription start site region 63256
Tssr63257 6 125191535 to 125191620 85 - TSS region transcription start site region 63257
Tssr63258 6 125191621 to 125191663 42 - TSS region transcription start site region 63258
Tssr2016 6 125191674 to 125191678 4 - TSS region transcription start site region 2016
Tssr58927 6 125191803 to 125191850 47 + TSS region transcription start site region 58927
Tssr63259 6 125192096 to 125192117 21 - TSS region transcription start site region 63259
Tssr58928 6 125192154 to 125192170 16 + TSS region transcription start site region 58928
Tssr58929 6 125192177 to 125192210 33 + TSS region transcription start site region 58929
Mrpl51 6 125192200 to 125194392 2192 + protein coding gene mitochondrial ribosomal protein L51
Mir3098 6 125195792 to 125195878 86 + miRNA gene microRNA 3098
Gm44487 6 125208367 to 125208691 324 - pseudogene predicted gene, 44487