Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:124539625-124721085

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
C1s1 6 124530345 to 124542359 12014 - protein coding gene complement component 1, s subcomponent 1
Gm16567 6 124530911 to 124542310 11399 + antisense lncRNA gene predicted gene 16567
Tssr63095 6 124542281 to 124542307 26 - TSS region transcription start site region 63095
Cpgi17961 6 124552875 to 124553067 192 CpG island CpG island 17961
Tssr58829 6 124556020 to 124556021 1 + TSS region transcription start site region 58829
Gm18840 6 124561215 to 124563785 2570 + pseudogene predicted gene, 18840
Tssr2007 6 124570288 to 124570296 8 + TSS region transcription start site region 2007
Tssr58830 6 124570304 to 124570315 11 + TSS region transcription start site region 58830
Tssr58831 6 124570320 to 124570323 3 + TSS region transcription start site region 58831
Tssr58832 6 124570350 to 124570361 11 + TSS region transcription start site region 58832
Tssr58833 6 124570366 to 124570399 33 + TSS region transcription start site region 58833
C1rb 6 124570430 to 124581044 10614 + protein coding gene complement component 1, r subcomponent B
C1s2 6 124624625 to 124636085 11460 - protein coding gene complement component 1, s subcomponent 2
Tssr63096 6 124636876 to 124636878 2 - TSS region transcription start site region 63096
Tssr63097 6 124636934 to 124636952 18 - TSS region transcription start site region 63097
Cpgi17962 6 124662419 to 124663644 1225 CpG island CpG island 17962
Lpcat3 6 124663027 to 124704418 41391 + protein coding gene lysophosphatidylcholine acyltransferase 3
Tssr58834 6 124663085 to 124663086 1 + TSS region transcription start site region 58834
Tssr58835 6 124663093 to 124663174 81 + TSS region transcription start site region 58835
Tssr58836 6 124663189 to 124663212 23 + TSS region transcription start site region 58836
Tssr58837 6 124701513 to 124701527 14 + TSS region transcription start site region 58837
Tssr58838 6 124701623 to 124701637 14 + TSS region transcription start site region 58838
Emg1 6 124704370 to 124712178 7808 - protein coding gene EMG1 N1-specific pseudouridine methyltransferase
Tssr63098 6 124709052 to 124709057 5 - TSS region transcription start site region 63098
Cpgi17963 6 124711900 to 124712934 1034 CpG island CpG island 17963
Tssr63099 6 124712038 to 124712071 33 - TSS region transcription start site region 63099
Tssr63100 6 124712131 to 124712171 40 - TSS region transcription start site region 63100
Tssr58839 6 124712279 to 124712353 74 + TSS region transcription start site region 58839
Phb2 6 124712336 to 124716950 4614 + protein coding gene prohibitin 2
Tssr58840 6 124713099 to 124713117 18 + TSS region transcription start site region 58840
Tssr58841 6 124714006 to 124714031 25 + TSS region transcription start site region 58841
Tssr58842 6 124715230 to 124715233 3 + TSS region transcription start site region 58842
Gm23547 6 124715232 to 124715502 270 + snoRNA gene predicted gene, 23547
Gm15884 6 124715573 to 124718831 3258 - antisense lncRNA gene predicted gene 15884
Gm29008 6 124717647 to 124717944 297 - sense intronic lncRNA gene predicted gene 29008
Mir141 6 124717914 to 124717985 71 - miRNA gene microRNA 141
Mirc13 6 124717914 to 124718390 476 complex/cluster/region microRNA cluster 13, including Mir141 through Mir200c
Mir200c 6 124718322 to 124718390 68 - miRNA gene microRNA 200c
Cpgi17964 6 124718643 to 124718822 179 CpG island CpG island 17964
Tssr63101 6 124718808 to 124718835 27 - TSS region transcription start site region 63101
Tssr63102 6 124718837 to 124718857 20 - TSS region transcription start site region 63102
Ptpn6 6 124720707 to 124738709 18002 - protein coding gene protein tyrosine phosphatase, non-receptor type 6