Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:124437707-125277755

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463 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Clstn3 6 124430756 to 124464784 34028 - protein coding gene calsyntenin 3
D6Mit331 6 124441054 to 124441148 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 331
Cpgi17960 6 124449434 to 124449861 427 CpG island CpG island 17960
Tssr63089 6 124450159 to 124450174 15 - TSS region transcription start site region 63089
Tssr63090 6 124450177 to 124450210 33 - TSS region transcription start site region 63090
Tssr63091 6 124464673 to 124464682 9 - TSS region transcription start site region 63091
Tssr63092 6 124464696 to 124464759 63 - TSS region transcription start site region 63092
Tssr63093 6 124464772 to 124464783 11 - TSS region transcription start site region 63093
D6Mit193.2 6 124467968 to 124468129 161 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 193.2
D6Mit193 6 124468113 to 124468231 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 193
Tssr58819 6 124474857 to 124474868 11 + TSS region transcription start site region 58819
Tssr58820 6 124476466 to 124476467 1 + TSS region transcription start site region 58820
Tssr58821 6 124477228 to 124477235 7 + TSS region transcription start site region 58821
Tssr58822 6 124480523 to 124480528 5 + TSS region transcription start site region 58822
Gm44096 6 124492163 to 124494368 2205 - antisense lncRNA gene predicted gene, 44096
Tssr58823 6 124493101 to 124493170 69 + TSS region transcription start site region 58823
C1rl 6 124493113 to 124510643 17530 + protein coding gene complement component 1, r subcomponent-like
Tssr58824 6 124493175 to 124493178 3 + TSS region transcription start site region 58824
Tssr63094 6 124496102 to 124496107 5 - TSS region transcription start site region 63094
Tssr2006 6 124505245 to 124505253 8 + TSS region transcription start site region 2006
Tssr58825 6 124512615 to 124512640 25 + TSS region transcription start site region 58825
C1ra 6 124512621 to 124523440 10819 + protein coding gene complement component 1, r subcomponent A
Tssr58826 6 124512644 to 124512668 24 + TSS region transcription start site region 58826
Tssr58827 6 124512713 to 124512735 22 + TSS region transcription start site region 58827
Tssr58828 6 124519964 to 124519979 15 + TSS region transcription start site region 58828
D6Mit336 6 124526698 to 124526820 122 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 336
C1s1 6 124530345 to 124542359 12014 - protein coding gene complement component 1, s subcomponent 1
Gm16567 6 124530911 to 124542310 11399 + antisense lncRNA gene predicted gene 16567
Tssr63095 6 124542281 to 124542307 26 - TSS region transcription start site region 63095
Cpgi17961 6 124552875 to 124553067 192 CpG island CpG island 17961
Tssr58829 6 124556020 to 124556021 1 + TSS region transcription start site region 58829
Gm18840 6 124561215 to 124563785 2570 + pseudogene predicted gene, 18840
Tssr2007 6 124570288 to 124570296 8 + TSS region transcription start site region 2007
Tssr58830 6 124570304 to 124570315 11 + TSS region transcription start site region 58830
Tssr58831 6 124570320 to 124570323 3 + TSS region transcription start site region 58831
Tssr58832 6 124570350 to 124570361 11 + TSS region transcription start site region 58832
Tssr58833 6 124570366 to 124570399 33 + TSS region transcription start site region 58833
C1rb 6 124570430 to 124581044 10614 + protein coding gene complement component 1, r subcomponent B
C1s2 6 124624625 to 124636085 11460 - protein coding gene complement component 1, s subcomponent 2
Tssr63096 6 124636876 to 124636878 2 - TSS region transcription start site region 63096
Tssr63097 6 124636934 to 124636952 18 - TSS region transcription start site region 63097
Cpgi17962 6 124662419 to 124663644 1225 CpG island CpG island 17962
Lpcat3 6 124663027 to 124704418 41391 + protein coding gene lysophosphatidylcholine acyltransferase 3
Tssr58834 6 124663085 to 124663086 1 + TSS region transcription start site region 58834
Tssr58835 6 124663093 to 124663174 81 + TSS region transcription start site region 58835
Tssr58836 6 124663189 to 124663212 23 + TSS region transcription start site region 58836
Tssr58837 6 124701513 to 124701527 14 + TSS region transcription start site region 58837
Tssr58838 6 124701623 to 124701637 14 + TSS region transcription start site region 58838
Emg1 6 124704370 to 124712178 7808 - protein coding gene EMG1 N1-specific pseudouridine methyltransferase
Tssr63098 6 124709052 to 124709057 5 - TSS region transcription start site region 63098
Cpgi17963 6 124711900 to 124712934 1034 CpG island CpG island 17963
Tssr63099 6 124712038 to 124712071 33 - TSS region transcription start site region 63099
Tssr63100 6 124712131 to 124712171 40 - TSS region transcription start site region 63100
Tssr58839 6 124712279 to 124712353 74 + TSS region transcription start site region 58839
Phb2 6 124712336 to 124716950 4614 + protein coding gene prohibitin 2
Tssr58840 6 124713099 to 124713117 18 + TSS region transcription start site region 58840
Tssr58841 6 124714006 to 124714031 25 + TSS region transcription start site region 58841
Tssr58842 6 124715230 to 124715233 3 + TSS region transcription start site region 58842
Gm23547 6 124715232 to 124715502 270 + snoRNA gene predicted gene, 23547
Gm15884 6 124715573 to 124718831 3258 - antisense lncRNA gene predicted gene 15884
Gm29008 6 124717647 to 124717944 297 - sense intronic lncRNA gene predicted gene 29008
Mir141 6 124717914 to 124717985 71 - miRNA gene microRNA 141
Mirc13 6 124717914 to 124718390 476 complex/cluster/region microRNA cluster 13, including Mir141 through Mir200c
Mir200c 6 124718322 to 124718390 68 - miRNA gene microRNA 200c
Cpgi17964 6 124718643 to 124718822 179 CpG island CpG island 17964
Tssr63101 6 124718808 to 124718835 27 - TSS region transcription start site region 63101
Tssr63102 6 124718837 to 124718857 20 - TSS region transcription start site region 63102
Ptpn6 6 124720707 to 124738709 18002 - protein coding gene protein tyrosine phosphatase, non-receptor type 6
Tssr63103 6 124721906 to 124721917 11 - TSS region transcription start site region 63103
Tssr2008 6 124722119 to 124722135 16 - TSS region transcription start site region 2008
Tssr2009 6 124722149 to 124722160 11 - TSS region transcription start site region 2009
2010010I01Rik 6 124722616 to 124724027 1411 unclassified gene RIKEN cDNA 2010010I01 gene
Tssr63104 6 124723001 to 124723003 2 - TSS region transcription start site region 63104
Tssr63105 6 124723614 to 124723654 40 - TSS region transcription start site region 63105
Tssr63106 6 124724590 to 124724604 14 - TSS region transcription start site region 63106
Tssr63107 6 124727113 to 124727124 11 - TSS region transcription start site region 63107
Tssr63108 6 124727212 to 124727216 4 - TSS region transcription start site region 63108
Tssr63109 6 124727274 to 124727287 13 - TSS region transcription start site region 63109
Tssr63110 6 124728445 to 124728454 9 - TSS region transcription start site region 63110
Tssr63111 6 124729939 to 124729954 15 - TSS region transcription start site region 63111
Tssr63112 6 124729980 to 124729991 11 - TSS region transcription start site region 63112
Gm20531 6 124732168 to 124738040 5872 + antisense lncRNA gene predicted gene 20531
Tssr63113 6 124732386 to 124732433 47 - TSS region transcription start site region 63113
Tssr63114 6 124733021 to 124733032 11 - TSS region transcription start site region 63114
Tssr63115 6 124733067 to 124733120 53 - TSS region transcription start site region 63115
Tssr63116 6 124733121 to 124733145 24 - TSS region transcription start site region 63116
Tssr63117 6 124733176 to 124733187 11 - TSS region transcription start site region 63117
Tssr63118 6 124738579 to 124738591 12 - TSS region transcription start site region 63118
Tssr63119 6 124738596 to 124738630 34 - TSS region transcription start site region 63119
Tssr63120 6 124738653 to 124738678 25 - TSS region transcription start site region 63120
Tssr63121 6 124738794 to 124738826 32 - TSS region transcription start site region 63121
Tssr63122 6 124738850 to 124738877 27 - TSS region transcription start site region 63122
Grcc10 6 124739183 to 124741079 1896 - protein coding gene gene rich cluster, C10 gene
Tssr58843 6 124739184 to 124739232 48 + TSS region transcription start site region 58843
Gm45234 6 124739189 to 124756021 16832 - protein coding gene predicted gene 45234
Cpgi17965 6 124740479 to 124741288 809 CpG island CpG island 17965
Tssr63123 6 124740984 to 124741093 109 - TSS region transcription start site region 63123
Tssr63124 6 124741101 to 124741118 17 - TSS region transcription start site region 63124
Tssr63125 6 124741119 to 124741128 9 - TSS region transcription start site region 63125
Tssr63126 6 124741183 to 124741193 10 - TSS region transcription start site region 63126
Rnu7 6 124741225 to 124741286 61 - snRNA gene U7 small nuclear RNA
Tssr63127 6 124741278 to 124741289 11 - TSS region transcription start site region 63127
Tssr63128 6 124741378 to 124741402 24 - TSS region transcription start site region 63128
Atn1 6 124742544 to 124756487 13943 - protein coding gene atrophin 1
Tssr63129 6 124742643 to 124742670 27 - TSS region transcription start site region 63129
Tssr63130 6 124742675 to 124742729 54 - TSS region transcription start site region 63130
Tssr58844 6 124743522 to 124743525 3 + TSS region transcription start site region 58844
Cpgi17966 6 124744896 to 124746547 1651 CpG island CpG island 17966
Tssr63131 6 124745600 to 124745619 19 - TSS region transcription start site region 63131
Tssr63132 6 124746687 to 124746704 17 - TSS region transcription start site region 63132
Tssr63133 6 124746858 to 124746878 20 - TSS region transcription start site region 63133
Tssr63134 6 124746941 to 124746958 17 - TSS region transcription start site region 63134
Tssr63135 6 124747123 to 124747163 40 - TSS region transcription start site region 63135
Tssr63136 6 124747192 to 124747220 28 - TSS region transcription start site region 63136
Tssr63137 6 124747402 to 124747428 26 - TSS region transcription start site region 63137
Tssr63138 6 124747969 to 124747994 25 - TSS region transcription start site region 63138
Tssr63139 6 124749503 to 124749522 19 - TSS region transcription start site region 63139
Tssr63140 6 124754014 to 124754017 3 - TSS region transcription start site region 63140
Cpgi17967 6 124755770 to 124757507 1737 CpG island CpG island 17967
Tssr63141 6 124756323 to 124756363 40 - TSS region transcription start site region 63141
Tssr63142 6 124756478 to 124756527 49 - TSS region transcription start site region 63142
Tssr63143 6 124756699 to 124756768 69 - TSS region transcription start site region 63143
Tssr63144 6 124756826 to 124756847 21 - TSS region transcription start site region 63144
Tssr63145 6 124756849 to 124756883 34 - TSS region transcription start site region 63145
Tssr63146 6 124756887 to 124756898 11 - TSS region transcription start site region 63146
Tssr63147 6 124756962 to 124756975 13 - TSS region transcription start site region 63147
Tssr63148 6 124756997 to 124757008 11 - TSS region transcription start site region 63148
Tssr63149 6 124757020 to 124757031 11 - TSS region transcription start site region 63149
Tssr63150 6 124757239 to 124757266 27 - TSS region transcription start site region 63150
Eno2 6 124760053 to 124769673 9620 - protein coding gene enolase 2, gamma neuronal
Tssr63151 6 124760507 to 124760522 15 - TSS region transcription start site region 63151
Tssr63152 6 124760825 to 124760840 15 - TSS region transcription start site region 63152
Tssr63153 6 124761283 to 124761293 10 - TSS region transcription start site region 63153
Tssr63154 6 124761335 to 124761347 12 - TSS region transcription start site region 63154
Tssr63155 6 124762722 to 124762736 14 - TSS region transcription start site region 63155
Cpgi17968 6 124762964 to 124763195 231 CpG island CpG island 17968
Tssr63156 6 124763065 to 124763076 11 - TSS region transcription start site region 63156
Tssr63157 6 124766131 to 124766149 18 - TSS region transcription start site region 63157
Tssr63158 6 124768330 to 124768380 50 - TSS region transcription start site region 63158
Cpgi17969 6 124768758 to 124769991 1233 CpG island CpG island 17969
Tssr63159 6 124769482 to 124769501 19 - TSS region transcription start site region 63159
Tssr63160 6 124769505 to 124769537 32 - TSS region transcription start site region 63160
Tssr63161 6 124769548 to 124769570 22 - TSS region transcription start site region 63161
Lrrc23 6 124769863 to 124779727 9864 - protein coding gene leucine rich repeat containing 23
Tssr63162 6 124779637 to 124779648 11 - TSS region transcription start site region 63162
Tssr2010 6 124779666 to 124779680 14 - TSS region transcription start site region 2010
Tssr63163 6 124779686 to 124779742 56 - TSS region transcription start site region 63163
Tssr63164 6 124779746 to 124779763 17 - TSS region transcription start site region 63164
Tssr63165 6 124780442 to 124780474 32 - TSS region transcription start site region 63165
Gm38895 6 124789334 to 124790310 976 + lncRNA gene predicted gene, 38895
Gm38894 6 124789734 to 124797093 7359 - lncRNA gene predicted gene, 38894
Cpgi17970 6 124805521 to 124805879 358 CpG island CpG island 17970
Tssr63166 6 124805717 to 124805745 28 - TSS region transcription start site region 63166
Tssr58845 6 124805816 to 124805854 38 + TSS region transcription start site region 58845
Tssr58846 6 124808658 to 124808704 46 + TSS region transcription start site region 58846
Spsb2 6 124808661 to 124810619 1958 + protein coding gene splA/ryanodine receptor domain and SOCS box containing 2
Cpgi17971 6 124808675 to 124809874 1199 CpG island CpG island 17971
Tssr58847 6 124808898 to 124808933 35 + TSS region transcription start site region 58847
Tssr58848 6 124808936 to 124808956 20 + TSS region transcription start site region 58848
Tssr58849 6 124809724 to 124809760 36 + TSS region transcription start site region 58849
Tpi1 6 124810592 to 124814296 3704 - protein coding gene triosephosphate isomerase 1
Tssr63167 6 124812482 to 124812503 21 - TSS region transcription start site region 63167
Tssr63168 6 124812890 to 124812916 26 - TSS region transcription start site region 63168
Tssr63169 6 124812963 to 124813033 70 - TSS region transcription start site region 63169
Tssr63170 6 124813045 to 124813057 12 - TSS region transcription start site region 63170
Tssr63171 6 124813065 to 124813092 27 - TSS region transcription start site region 63171
Tssr63172 6 124813095 to 124813111 16 - TSS region transcription start site region 63172
Cpgi17972 6 124813467 to 124813780 313 CpG island CpG island 17972
Tssr63173 6 124814151 to 124814168 17 - TSS region transcription start site region 63173
Tssr63174 6 124814269 to 124814278 9 - TSS region transcription start site region 63174
Tssr63175 6 124814288 to 124814296 8 - TSS region transcription start site region 63175
Tssr63176 6 124814297 to 124814310 13 - TSS region transcription start site region 63176
Usp5 6 124815019 to 124829484 14465 - protein coding gene ubiquitin specific peptidase 5 (isopeptidase T)
Tssr2011 6 124817997 to 124818007 10 - TSS region transcription start site region 2011
Tssr63177 6 124818011 to 124818021 10 - TSS region transcription start site region 63177
Tssr63178 6 124818039 to 124818054 15 - TSS region transcription start site region 63178
Tssr63179 6 124819436 to 124819453 17 - TSS region transcription start site region 63179
Tssr63180 6 124828313 to 124828343 30 - TSS region transcription start site region 63180
Cpgi17973 6 124828924 to 124829654 730 CpG island CpG island 17973
Tssr63181 6 124829398 to 124829452 54 - TSS region transcription start site region 63181
Tssr63182 6 124829467 to 124829478 11 - TSS region transcription start site region 63182
Tssr58850 6 124829494 to 124829513 19 + TSS region transcription start site region 58850
Tssr58851 6 124829516 to 124829539 23 + TSS region transcription start site region 58851
Tssr58852 6 124829540 to 124829577 37 + TSS region transcription start site region 58852
Cdca3 6 124829547 to 124833701 4154 + protein coding gene cell division cycle associated 3
Tssr58853 6 124829582 to 124829587 5 + TSS region transcription start site region 58853
Tssr58854 6 124830193 to 124830209 16 + TSS region transcription start site region 58854
Tssr58855 6 124830218 to 124830251 33 + TSS region transcription start site region 58855
Cpgi17974 6 124830261 to 124830627 366 CpG island CpG island 17974
Gnb3 6 124834240 to 124840275 6035 - protein coding gene guanine nucleotide binding protein (G protein), beta 3
Tssr63183 6 124839967 to 124840016 49 - TSS region transcription start site region 63183
Tssr63184 6 124840041 to 124840052 11 - TSS region transcription start site region 63184
Tssr63185 6 124840058 to 124840069 11 - TSS region transcription start site region 63185
Tssr63186 6 124840183 to 124840186 3 - TSS region transcription start site region 63186
Tssr63187 6 124840192 to 124840205 13 - TSS region transcription start site region 63187
P3h3 6 124841095 to 124857687 16592 - protein coding gene prolyl 3-hydroxylase 3
Cpgi17975 6 124856942 to 124858288 1346 CpG island CpG island 17975
Tssr58856 6 124857140 to 124857165 25 + TSS region transcription start site region 58856
Tssr63188 6 124857687 to 124857705 18 - TSS region transcription start site region 63188
Tssr63189 6 124857707 to 124857755 48 - TSS region transcription start site region 63189