Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:123583122-124553170

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Vmn2r22 6 123609758 to 123650635 40877 - protein coding gene vomeronasal 2, receptor 22
Gm25065 6 123623932 to 123624063 131 + snoRNA gene predicted gene, 25065
Tssr58812 6 123653488 to 123653493 5 + TSS region transcription start site region 58812
Gm18374 6 123661724 to 123672898 11174 - pseudogene predicted gene, 18374
Vmn2r23 6 123702821 to 123742239 39418 + protein coding gene vomeronasal 2, receptor 23
Gm22724 6 123736886 to 123737012 126 - snoRNA gene predicted gene, 22724
Vmn2r24 6 123778971 to 123816280 37309 + protein coding gene vomeronasal 2, receptor 24
Gm18608 6 123793710 to 123794546 836 + pseudogene predicted gene, 18608
Gm23079 6 123808105 to 123808221 116 - snoRNA gene predicted gene, 23079
Vmn2r25 6 123822814 to 123853190 30376 - protein coding gene vomeronasal 2, receptor 25
Gm5317 6 123886396 to 123887242 846 + pseudogene predicted gene 5317
A330044P14Rik 6 123932288 to 123939493 7205 - pseudogene RIKEN cDNA A330044P14 gene
Gm44823 6 123932293 to 123939493 7200 - pseudogene predicted gene 44823
Gm22763 6 123954883 to 123954989 106 + snoRNA gene predicted gene, 22763
Gm21023 6 123959783 to 123978041 18258 - pseudogene predicted gene, 21023
Vmn2r26 6 124024758 to 124062035 37277 + protein coding gene vomeronasal 2, receptor 26
Gm24843 6 124058539 to 124058614 75 - snoRNA gene predicted gene, 24843
Tssr58813 6 124065805 to 124065808 3 + TSS region transcription start site region 58813
Tssr58814 6 124068122 to 124068170 48 + TSS region transcription start site region 58814
Vmn2r-ps33 6 124081698 to 124082601 903 - pseudogene vomeronasal 2, receptor, pseudogene 33
Gm22916 6 124095450 to 124095568 118 + snoRNA gene predicted gene, 22916
Vmn2r-ps34 6 124138731 to 124173146 34415 - pseudogene vomeronasal 2, receptor, pseudogene 34
Gm23554 6 124142185 to 124142294 109 + snoRNA gene predicted gene, 23554
Vmn2r27 6 124191596 to 124231784 40188 - protein coding gene vomeronasal 2, receptor27
Gm6423 6 124251531 to 124252464 933 + pseudogene predicted gene 6423
Tssr58815 6 124272528 to 124272538 10 + TSS region transcription start site region 58815
Gm43971 6 124279485 to 124282592 3107 + lincRNA gene predicted gene, 43971
Tssr58816 6 124279797 to 124279811 14 + TSS region transcription start site region 58816
Gm6308 6 124297863 to 124298175 312 + pseudogene predicted gene 6308
Gm25311 6 124304297 to 124304428 131 - snoRNA gene predicted gene, 25311
Tssr58817 6 124304646 to 124304671 25 + TSS region transcription start site region 58817
Cd163 6 124304656 to 124330527 25871 + protein coding gene CD163 antigen
Tssr58818 6 124320527 to 124320537 10 + TSS region transcription start site region 58818
Tssr63072 6 124321556 to 124321627 71 - TSS region transcription start site region 63072
Tssr63073 6 124321632 to 124321654 22 - TSS region transcription start site region 63073
Tssr63074 6 124321660 to 124321670 10 - TSS region transcription start site region 63074
1700013D24Rik 6 124347598 to 124357069 9471 - protein coding gene RIKEN cDNA 1700013D24 gene
Tssr63075 6 124357032 to 124357054 22 - TSS region transcription start site region 63075
Tssr63076 6 124357067 to 124357078 11 - TSS region transcription start site region 63076
D6Mit12 6 124357314 to 124357438 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 12
Pas17 6 124357314 to 145656013 21298699 QTL pulmonary adenoma susceptibility 17
1700027F06Rik 6 124363282 to 124364486 1204 - lincRNA gene RIKEN cDNA 1700027F06 gene
Tssr63077 6 124364470 to 124364477 7 - TSS region transcription start site region 63077
Tssr63078 6 124364479 to 124364495 16 - TSS region transcription start site region 63078
1700060L04Rik 6 124372161 to 124374804 2643 lncRNA gene RIKEN cDNA 1700060L04 gene
Gm44006 6 124372162 to 124374805 2643 + lincRNA gene predicted gene, 44006
Gm44007 6 124381972 to 124384160 2188 - unclassified gene predicted gene, 44007
Pex5 6 124396816 to 124415067 18251 - protein coding gene peroxisomal biogenesis factor 5
Cpgi17959 6 124414315 to 124415420 1105 CpG island CpG island 17959
Tssr63079 6 124415017 to 124415026 9 - TSS region transcription start site region 63079
Tssr63080 6 124415037 to 124415078 41 - TSS region transcription start site region 63080
D830015G05Rik 6 124415090 to 124423436 8346 + lncRNA gene RIKEN cDNA D830015G05 gene
Clstn3 6 124430756 to 124464784 34028 - protein coding gene calsyntenin 3
Tssr63081 6 124431601 to 124431610 9 - TSS region transcription start site region 63081
Tssr63082 6 124433433 to 124433438 5 - TSS region transcription start site region 63082
Tssr63083 6 124433469 to 124433485 16 - TSS region transcription start site region 63083
Tssr63084 6 124433490 to 124433515 25 - TSS region transcription start site region 63084
Tssr63085 6 124433522 to 124433534 12 - TSS region transcription start site region 63085
Tssr63086 6 124433749 to 124433778 29 - TSS region transcription start site region 63086
Tssr63087 6 124433779 to 124433801 22 - TSS region transcription start site region 63087
Tssr63088 6 124436374 to 124436395 21 - TSS region transcription start site region 63088
D6Mit331 6 124441054 to 124441148 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 331
Cpgi17960 6 124449434 to 124449861 427 CpG island CpG island 17960
Tssr63089 6 124450159 to 124450174 15 - TSS region transcription start site region 63089
Tssr63090 6 124450177 to 124450210 33 - TSS region transcription start site region 63090
Tssr63091 6 124464673 to 124464682 9 - TSS region transcription start site region 63091
Tssr63092 6 124464696 to 124464759 63 - TSS region transcription start site region 63092
Tssr63093 6 124464772 to 124464783 11 - TSS region transcription start site region 63093
D6Mit193.2 6 124467968 to 124468129 161 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 193.2
D6Mit193 6 124468113 to 124468231 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 193
Tssr58819 6 124474857 to 124474868 11 + TSS region transcription start site region 58819
Tssr58820 6 124476466 to 124476467 1 + TSS region transcription start site region 58820
Tssr58821 6 124477228 to 124477235 7 + TSS region transcription start site region 58821
Tssr58822 6 124480523 to 124480528 5 + TSS region transcription start site region 58822
Gm44096 6 124492163 to 124494368 2205 - antisense lncRNA gene predicted gene, 44096
Tssr58823 6 124493101 to 124493170 69 + TSS region transcription start site region 58823
C1rl 6 124493113 to 124510643 17530 + protein coding gene complement component 1, r subcomponent-like
Tssr58824 6 124493175 to 124493178 3 + TSS region transcription start site region 58824
Tssr63094 6 124496102 to 124496107 5 - TSS region transcription start site region 63094
Tssr2006 6 124505245 to 124505253 8 + TSS region transcription start site region 2006
Tssr58825 6 124512615 to 124512640 25 + TSS region transcription start site region 58825
C1ra 6 124512621 to 124523440 10819 + protein coding gene complement component 1, r subcomponent A
Tssr58826 6 124512644 to 124512668 24 + TSS region transcription start site region 58826
Tssr58827 6 124512713 to 124512735 22 + TSS region transcription start site region 58827
Tssr58828 6 124519964 to 124519979 15 + TSS region transcription start site region 58828
D6Mit336 6 124526698 to 124526820 122 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 336
C1s1 6 124530345 to 124542359 12014 - protein coding gene complement component 1, s subcomponent 1
Gm16567 6 124530911 to 124542310 11399 + antisense lncRNA gene predicted gene 16567
Tssr63095 6 124542281 to 124542307 26 - TSS region transcription start site region 63095
Cpgi17961 6 124552875 to 124553067 192 CpG island CpG island 17961