Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:123285430-125866044

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686 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tilss4 6 112269957 to 125356785 13086828 QTL TNF-induced lethal shock susceptibility 3
Clec4e 6 123281789 to 123289870 8081 - protein coding gene C-type lectin domain family 4, member e
Tssr63054 6 123285464 to 123285473 9 - TSS region transcription start site region 63054
Tssr63055 6 123285491 to 123285524 33 - TSS region transcription start site region 63055
Tssr63056 6 123285532 to 123285547 15 - TSS region transcription start site region 63056
Tssr63057 6 123285565 to 123285589 24 - TSS region transcription start site region 63057
Tssr63058 6 123286225 to 123286301 76 - TSS region transcription start site region 63058
Tssr63059 6 123286304 to 123286367 63 - TSS region transcription start site region 63059
Tssr63060 6 123286482 to 123286492 10 - TSS region transcription start site region 63060
Tssr63061 6 123287037 to 123287039 2 - TSS region transcription start site region 63061
Tssr63062 6 123287386 to 123287397 11 - TSS region transcription start site region 63062
Tssr63063 6 123288879 to 123288898 19 - TSS region transcription start site region 63063
Tssr63064 6 123288906 to 123289007 101 - TSS region transcription start site region 63064
Tssr63065 6 123289233 to 123289236 3 - TSS region transcription start site region 63065
Tssr63066 6 123289817 to 123289826 9 - TSS region transcription start site region 63066
Tssr63067 6 123289862 to 123289876 14 - TSS region transcription start site region 63067
Tssr63068 6 123290358 to 123290371 13 - TSS region transcription start site region 63068
Tssr63069 6 123290555 to 123290563 8 - TSS region transcription start site region 63069
Tssr63070 6 123290587 to 123290596 9 - TSS region transcription start site region 63070
Tssr63071 6 123290597 to 123290609 12 - TSS region transcription start site region 63071
Vmn2r19 6 123308333 to 123336537 28204 + protein coding gene vomeronasal 2, receptor 19
Gm18375 6 123344279 to 123409813 65534 + pseudogene predicted gene, 18375
Vmn2r20 6 123385262 to 123418061 32799 - protein coding gene vomeronasal 2, receptor 20
Gm22833 6 123424556 to 123424687 131 - snoRNA gene predicted gene, 22833
Vmn2r-ps31 6 123443775 to 123444534 759 + pseudogene vomeronasal 2, receptor, pseudogene 31
Vmn2r21 6 123492508 to 123533406 40898 - protein coding gene vomeronasal 2, receptor 21
Gm25891 6 123506711 to 123506842 131 + snoRNA gene predicted gene, 25891
Gm22722 6 123539901 to 123540032 131 - snoRNA gene predicted gene, 22722
Vmn2r-ps32 6 123559122 to 123559878 756 + pseudogene vomeronasal 2, receptor, pseudogene 32
Vmn2r22 6 123609758 to 123650635 40877 - protein coding gene vomeronasal 2, receptor 22
Gm25065 6 123623932 to 123624063 131 + snoRNA gene predicted gene, 25065
Tssr58812 6 123653488 to 123653493 5 + TSS region transcription start site region 58812
Gm18374 6 123661724 to 123672898 11174 - pseudogene predicted gene, 18374
Vmn2r23 6 123702821 to 123742239 39418 + protein coding gene vomeronasal 2, receptor 23
Gm22724 6 123736886 to 123737012 126 - snoRNA gene predicted gene, 22724
Vmn2r24 6 123778971 to 123816280 37309 + protein coding gene vomeronasal 2, receptor 24
Gm18608 6 123793710 to 123794546 836 + pseudogene predicted gene, 18608
Gm23079 6 123808105 to 123808221 116 - snoRNA gene predicted gene, 23079
Vmn2r25 6 123822814 to 123853190 30376 - protein coding gene vomeronasal 2, receptor 25
Gm5317 6 123886396 to 123887242 846 + pseudogene predicted gene 5317
A330044P14Rik 6 123932288 to 123939493 7205 - pseudogene RIKEN cDNA A330044P14 gene
Gm44823 6 123932293 to 123939493 7200 - pseudogene predicted gene 44823
Gm22763 6 123954883 to 123954989 106 + snoRNA gene predicted gene, 22763
Gm21023 6 123959783 to 123978041 18258 - pseudogene predicted gene, 21023
Vmn2r26 6 124024758 to 124062035 37277 + protein coding gene vomeronasal 2, receptor 26
Gm24843 6 124058539 to 124058614 75 - snoRNA gene predicted gene, 24843
Tssr58813 6 124065805 to 124065808 3 + TSS region transcription start site region 58813
Tssr58814 6 124068122 to 124068170 48 + TSS region transcription start site region 58814
Vmn2r-ps33 6 124081698 to 124082601 903 - pseudogene vomeronasal 2, receptor, pseudogene 33
Gm22916 6 124095450 to 124095568 118 + snoRNA gene predicted gene, 22916
Vmn2r-ps34 6 124138731 to 124173146 34415 - pseudogene vomeronasal 2, receptor, pseudogene 34
Gm23554 6 124142185 to 124142294 109 + snoRNA gene predicted gene, 23554
Vmn2r27 6 124191596 to 124231784 40188 - protein coding gene vomeronasal 2, receptor27
Gm6423 6 124251531 to 124252464 933 + pseudogene predicted gene 6423
Tssr58815 6 124272528 to 124272538 10 + TSS region transcription start site region 58815
Gm43971 6 124279485 to 124282592 3107 + lincRNA gene predicted gene, 43971
Tssr58816 6 124279797 to 124279811 14 + TSS region transcription start site region 58816
Gm6308 6 124297863 to 124298175 312 + pseudogene predicted gene 6308
Gm25311 6 124304297 to 124304428 131 - snoRNA gene predicted gene, 25311
Tssr58817 6 124304646 to 124304671 25 + TSS region transcription start site region 58817
Cd163 6 124304656 to 124330527 25871 + protein coding gene CD163 antigen
Tssr58818 6 124320527 to 124320537 10 + TSS region transcription start site region 58818
Tssr63072 6 124321556 to 124321627 71 - TSS region transcription start site region 63072
Tssr63073 6 124321632 to 124321654 22 - TSS region transcription start site region 63073
Tssr63074 6 124321660 to 124321670 10 - TSS region transcription start site region 63074
1700013D24Rik 6 124347598 to 124357069 9471 - protein coding gene RIKEN cDNA 1700013D24 gene
Tssr63075 6 124357032 to 124357054 22 - TSS region transcription start site region 63075
Tssr63076 6 124357067 to 124357078 11 - TSS region transcription start site region 63076
D6Mit12 6 124357314 to 124357438 124 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 12
Pas17 6 124357314 to 145656013 21298699 QTL pulmonary adenoma susceptibility 17
1700027F06Rik 6 124363282 to 124364486 1204 - lincRNA gene RIKEN cDNA 1700027F06 gene
Tssr63077 6 124364470 to 124364477 7 - TSS region transcription start site region 63077
Tssr63078 6 124364479 to 124364495 16 - TSS region transcription start site region 63078
1700060L04Rik 6 124372161 to 124374804 2643 lncRNA gene RIKEN cDNA 1700060L04 gene
Gm44006 6 124372162 to 124374805 2643 + lincRNA gene predicted gene, 44006
Gm44007 6 124381972 to 124384160 2188 - unclassified gene predicted gene, 44007
Pex5 6 124396816 to 124415067 18251 - protein coding gene peroxisomal biogenesis factor 5
Cpgi17959 6 124414315 to 124415420 1105 CpG island CpG island 17959
Tssr63079 6 124415017 to 124415026 9 - TSS region transcription start site region 63079
Tssr63080 6 124415037 to 124415078 41 - TSS region transcription start site region 63080
D830015G05Rik 6 124415090 to 124423436 8346 + lncRNA gene RIKEN cDNA D830015G05 gene
Clstn3 6 124430756 to 124464784 34028 - protein coding gene calsyntenin 3
Tssr63081 6 124431601 to 124431610 9 - TSS region transcription start site region 63081
Tssr63082 6 124433433 to 124433438 5 - TSS region transcription start site region 63082
Tssr63083 6 124433469 to 124433485 16 - TSS region transcription start site region 63083
Tssr63084 6 124433490 to 124433515 25 - TSS region transcription start site region 63084
Tssr63085 6 124433522 to 124433534 12 - TSS region transcription start site region 63085
Tssr63086 6 124433749 to 124433778 29 - TSS region transcription start site region 63086
Tssr63087 6 124433779 to 124433801 22 - TSS region transcription start site region 63087
Tssr63088 6 124436374 to 124436395 21 - TSS region transcription start site region 63088
D6Mit331 6 124441054 to 124441148 94 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 331
Cpgi17960 6 124449434 to 124449861 427 CpG island CpG island 17960
Tssr63089 6 124450159 to 124450174 15 - TSS region transcription start site region 63089
Tssr63090 6 124450177 to 124450210 33 - TSS region transcription start site region 63090
Tssr63091 6 124464673 to 124464682 9 - TSS region transcription start site region 63091
Tssr63092 6 124464696 to 124464759 63 - TSS region transcription start site region 63092
Tssr63093 6 124464772 to 124464783 11 - TSS region transcription start site region 63093
D6Mit193.2 6 124467968 to 124468129 161 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 193.2
D6Mit193 6 124468113 to 124468231 118 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 193
Tssr58819 6 124474857 to 124474868 11 + TSS region transcription start site region 58819
Tssr58820 6 124476466 to 124476467 1 + TSS region transcription start site region 58820
Tssr58821 6 124477228 to 124477235 7 + TSS region transcription start site region 58821
Tssr58822 6 124480523 to 124480528 5 + TSS region transcription start site region 58822
Gm44096 6 124492163 to 124494368 2205 - antisense lncRNA gene predicted gene, 44096
Tssr58823 6 124493101 to 124493170 69 + TSS region transcription start site region 58823
C1rl 6 124493113 to 124510643 17530 + protein coding gene complement component 1, r subcomponent-like
Tssr58824 6 124493175 to 124493178 3 + TSS region transcription start site region 58824
Tssr63094 6 124496102 to 124496107 5 - TSS region transcription start site region 63094
Tssr2006 6 124505245 to 124505253 8 + TSS region transcription start site region 2006
Tssr58825 6 124512615 to 124512640 25 + TSS region transcription start site region 58825
C1ra 6 124512621 to 124523440 10819 + protein coding gene complement component 1, r subcomponent A
Tssr58826 6 124512644 to 124512668 24 + TSS region transcription start site region 58826
Tssr58827 6 124512713 to 124512735 22 + TSS region transcription start site region 58827
Tssr58828 6 124519964 to 124519979 15 + TSS region transcription start site region 58828
D6Mit336 6 124526698 to 124526820 122 DNA segment DNA Segment, Chr 6, Massachusetts Institute of Technology 336
C1s1 6 124530345 to 124542359 12014 - protein coding gene complement component 1, s subcomponent 1
Gm16567 6 124530911 to 124542310 11399 + antisense lncRNA gene predicted gene 16567
Tssr63095 6 124542281 to 124542307 26 - TSS region transcription start site region 63095
Cpgi17961 6 124552875 to 124553067 192 CpG island CpG island 17961
Tssr58829 6 124556020 to 124556021 1 + TSS region transcription start site region 58829
Gm18840 6 124561215 to 124563785 2570 + pseudogene predicted gene, 18840
Tssr2007 6 124570288 to 124570296 8 + TSS region transcription start site region 2007
Tssr58830 6 124570304 to 124570315 11 + TSS region transcription start site region 58830
Tssr58831 6 124570320 to 124570323 3 + TSS region transcription start site region 58831
Tssr58832 6 124570350 to 124570361 11 + TSS region transcription start site region 58832
Tssr58833 6 124570366 to 124570399 33 + TSS region transcription start site region 58833
C1rb 6 124570430 to 124581044 10614 + protein coding gene complement component 1, r subcomponent B
C1s2 6 124624625 to 124636085 11460 - protein coding gene complement component 1, s subcomponent 2
Tssr63096 6 124636876 to 124636878 2 - TSS region transcription start site region 63096
Tssr63097 6 124636934 to 124636952 18 - TSS region transcription start site region 63097
Cpgi17962 6 124662419 to 124663644 1225 CpG island CpG island 17962
Lpcat3 6 124663027 to 124704418 41391 + protein coding gene lysophosphatidylcholine acyltransferase 3
Tssr58834 6 124663085 to 124663086 1 + TSS region transcription start site region 58834
Tssr58835 6 124663093 to 124663174 81 + TSS region transcription start site region 58835
Tssr58836 6 124663189 to 124663212 23 + TSS region transcription start site region 58836
Tssr58837 6 124701513 to 124701527 14 + TSS region transcription start site region 58837
Tssr58838 6 124701623 to 124701637 14 + TSS region transcription start site region 58838
Emg1 6 124704370 to 124712178 7808 - protein coding gene EMG1 N1-specific pseudouridine methyltransferase
Tssr63098 6 124709052 to 124709057 5 - TSS region transcription start site region 63098
Cpgi17963 6 124711900 to 124712934 1034 CpG island CpG island 17963
Tssr63099 6 124712038 to 124712071 33 - TSS region transcription start site region 63099
Tssr63100 6 124712131 to 124712171 40 - TSS region transcription start site region 63100
Tssr58839 6 124712279 to 124712353 74 + TSS region transcription start site region 58839
Phb2 6 124712336 to 124716950 4614 + protein coding gene prohibitin 2
Tssr58840 6 124713099 to 124713117 18 + TSS region transcription start site region 58840
Tssr58841 6 124714006 to 124714031 25 + TSS region transcription start site region 58841
Tssr58842 6 124715230 to 124715233 3 + TSS region transcription start site region 58842
Gm23547 6 124715232 to 124715502 270 + snoRNA gene predicted gene, 23547
Gm15884 6 124715573 to 124718831 3258 - antisense lncRNA gene predicted gene 15884
Gm29008 6 124717647 to 124717944 297 - sense intronic lncRNA gene predicted gene 29008
Mir141 6 124717914 to 124717985 71 - miRNA gene microRNA 141
Mirc13 6 124717914 to 124718390 476 complex/cluster/region microRNA cluster 13, including Mir141 through Mir200c
Mir200c 6 124718322 to 124718390 68 - miRNA gene microRNA 200c
Cpgi17964 6 124718643 to 124718822 179 CpG island CpG island 17964
Tssr63101 6 124718808 to 124718835 27 - TSS region transcription start site region 63101
Tssr63102 6 124718837 to 124718857 20 - TSS region transcription start site region 63102
Ptpn6 6 124720707 to 124738709 18002 - protein coding gene protein tyrosine phosphatase, non-receptor type 6
Tssr63103 6 124721906 to 124721917 11 - TSS region transcription start site region 63103
Tssr2008 6 124722119 to 124722135 16 - TSS region transcription start site region 2008
Tssr2009 6 124722149 to 124722160 11 - TSS region transcription start site region 2009
2010010I01Rik 6 124722616 to 124724027 1411 unclassified gene RIKEN cDNA 2010010I01 gene
Tssr63104 6 124723001 to 124723003 2 - TSS region transcription start site region 63104
Tssr63105 6 124723614 to 124723654 40 - TSS region transcription start site region 63105
Tssr63106 6 124724590 to 124724604 14 - TSS region transcription start site region 63106
Tssr63107 6 124727113 to 124727124 11 - TSS region transcription start site region 63107
Tssr63108 6 124727212 to 124727216 4 - TSS region transcription start site region 63108
Tssr63109 6 124727274 to 124727287 13 - TSS region transcription start site region 63109
Tssr63110 6 124728445 to 124728454 9 - TSS region transcription start site region 63110
Tssr63111 6 124729939 to 124729954 15 - TSS region transcription start site region 63111
Tssr63112 6 124729980 to 124729991 11 - TSS region transcription start site region 63112
Gm20531 6 124732168 to 124738040 5872 + antisense lncRNA gene predicted gene 20531
Tssr63113 6 124732386 to 124732433 47 - TSS region transcription start site region 63113
Tssr63114 6 124733021 to 124733032 11 - TSS region transcription start site region 63114
Tssr63115 6 124733067 to 124733120 53 - TSS region transcription start site region 63115
Tssr63116 6 124733121 to 124733145 24 - TSS region transcription start site region 63116
Tssr63117 6 124733176 to 124733187 11 - TSS region transcription start site region 63117
Tssr63118 6 124738579 to 124738591 12 - TSS region transcription start site region 63118
Tssr63119 6 124738596 to 124738630 34 - TSS region transcription start site region 63119
Tssr63120 6 124738653 to 124738678 25 - TSS region transcription start site region 63120
Tssr63121 6 124738794 to 124738826 32 - TSS region transcription start site region 63121
Tssr63122 6 124738850 to 124738877 27 - TSS region transcription start site region 63122
Grcc10 6 124739183 to 124741079 1896 - protein coding gene gene rich cluster, C10 gene
Tssr58843 6 124739184 to 124739232 48 + TSS region transcription start site region 58843
Gm45234 6 124739189 to 124756021 16832 - protein coding gene predicted gene 45234
Cpgi17965 6 124740479 to 124741288 809 CpG island CpG island 17965
Tssr63123 6 124740984 to 124741093 109 - TSS region transcription start site region 63123
Tssr63124 6 124741101 to 124741118 17 - TSS region transcription start site region 63124
Tssr63125 6 124741119 to 124741128 9 - TSS region transcription start site region 63125
Tssr63126 6 124741183 to 124741193 10 - TSS region transcription start site region 63126
Rnu7 6 124741225 to 124741286 61 - snRNA gene U7 small nuclear RNA
Tssr63127 6 124741278 to 124741289 11 - TSS region transcription start site region 63127
Tssr63128 6 124741378 to 124741402 24 - TSS region transcription start site region 63128
Atn1 6 124742544 to 124756487 13943 - protein coding gene atrophin 1
Tssr63129 6 124742643 to 124742670 27 - TSS region transcription start site region 63129
Tssr63130 6 124742675 to 124742729 54 - TSS region transcription start site region 63130
Tssr58844 6 124743522 to 124743525 3 + TSS region transcription start site region 58844
Cpgi17966 6 124744896 to 124746547 1651 CpG island CpG island 17966
Tssr63131 6 124745600 to 124745619 19 - TSS region transcription start site region 63131
Tssr63132 6 124746687 to 124746704 17 - TSS region transcription start site region 63132
Tssr63133 6 124746858 to 124746878 20 - TSS region transcription start site region 63133