Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 6:122628379-122828410

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dppa3 6 122626424 to 122630271 3847 + protein coding gene developmental pluripotency-associated 3
Tssr58689 6 122628380 to 122628396 16 + TSS region transcription start site region 58689
Tssr62937 6 122633491 to 122633504 13 - TSS region transcription start site region 62937
Tssr62938 6 122635370 to 122635381 11 - TSS region transcription start site region 62938
Tssr58690 6 122635571 to 122635610 39 + TSS region transcription start site region 58690
Tssr58691 6 122644266 to 122644270 4 + TSS region transcription start site region 58691
Gm8460 6 122644274 to 122644781 507 + pseudogene predicted gene 8460
Cpgi17950 6 122644429 to 122644697 268 CpG island CpG island 17950
Tssr62939 6 122654372 to 122654387 15 - TSS region transcription start site region 62939
Tssr58692 6 122654581 to 122654630 49 + TSS region transcription start site region 58692
Tssr62940 6 122657774 to 122657786 12 - TSS region transcription start site region 62940
Cpgi17951 6 122695963 to 122696116 153 CpG island CpG island 17951
Tssr58693 6 122695971 to 122695976 5 + TSS region transcription start site region 58693
Gm10420 6 122696001 to 122696882 881 + pseudogene predicted gene 10420
Gm10224 6 122698414 to 122699028 614 - pseudogene predicted pseudogene 10224
Tssr62941 6 122699064 to 122699065 1 - TSS region transcription start site region 62941
Tssr58694 6 122706594 to 122706605 11 + TSS region transcription start site region 58694
Nanog 6 122707489 to 122714633 7144 + protein coding gene Nanog homeobox
Tssr58695 6 122707592 to 122707608 16 + TSS region transcription start site region 58695
Slc2a3 6 122727809 to 122801640 73831 - protein coding gene solute carrier family 2 (facilitated glucose transporter), member 3
Tssr62942 6 122728326 to 122728338 12 - TSS region transcription start site region 62942
Tssr62943 6 122728379 to 122728410 31 - TSS region transcription start site region 62943
Tssr62944 6 122729496 to 122729544 48 - TSS region transcription start site region 62944
Tssr62945 6 122729908 to 122729929 21 - TSS region transcription start site region 62945
Tssr62946 6 122730004 to 122730048 44 - TSS region transcription start site region 62946
Tssr62947 6 122730097 to 122730119 22 - TSS region transcription start site region 62947
Tssr62948 6 122730120 to 122730132 12 - TSS region transcription start site region 62948
Tssr62949 6 122732401 to 122732422 21 - TSS region transcription start site region 62949
Tssr62950 6 122732438 to 122732459 21 - TSS region transcription start site region 62950
Cpgi17952 6 122742053 to 122742435 382 CpG island CpG island 17952
Tssr62951 6 122742482 to 122742502 20 - TSS region transcription start site region 62951
Tssr62952 6 122742509 to 122742527 18 - TSS region transcription start site region 62952
Tssr62953 6 122758826 to 122758858 32 - TSS region transcription start site region 62953
Tssr58696 6 122761230 to 122761241 11 + TSS region transcription start site region 58696
Tssr58697 6 122761252 to 122761275 23 + TSS region transcription start site region 58697
Tssr58698 6 122761438 to 122761440 2 + TSS region transcription start site region 58698
Cpgi17953 6 122764253 to 122765287 1034 CpG island CpG island 17953
Tssr62954 6 122764747 to 122764760 13 - TSS region transcription start site region 62954
Tssr62955 6 122765261 to 122765273 12 - TSS region transcription start site region 62955
Tssr58699 6 122770695 to 122770707 12 + TSS region transcription start site region 58699
Tssr62956 6 122779966 to 122779970 4 - TSS region transcription start site region 62956
D6Mit151 6 122785106 to 122785252 146 DNA segment DNA segment, Chr 6, Massachusetts Institute of Technology 151
Gm4482 6 122792584 to 122793325 741 - pseudogene predicted gene 4482
Tssr62957 6 122800825 to 122800827 2 - TSS region transcription start site region 62957
Cpgi17954 6 122801336 to 122802365 1029 CpG island CpG island 17954
Tssr62958 6 122801639 to 122801653 14 - TSS region transcription start site region 62958
Tssr62959 6 122801661 to 122801677 16 - TSS region transcription start site region 62959
Tssr62960 6 122801680 to 122801723 43 - TSS region transcription start site region 62960
Tssr62961 6 122801726 to 122801740 14 - TSS region transcription start site region 62961
Tssr2001 6 122801747 to 122801756 9 - TSS region transcription start site region 2001
Tssr62962 6 122802169 to 122802232 63 - TSS region transcription start site region 62962
Cpgi17955 6 122810491 to 122811636 1145 CpG island CpG island 17955
Gm5112 6 122811170 to 122813537 2367 + protein coding gene predicted gene 5112
Tssr58700 6 122811189 to 122811221 32 + TSS region transcription start site region 58700
Tssr58701 6 122811504 to 122811521 17 + TSS region transcription start site region 58701
Gm26826 6 122813619 to 122820614 6995 - antisense lncRNA gene predicted gene, 26826
Cpgi17956 6 122819434 to 122820857 1423 CpG island CpG island 17956
Tssr58702 6 122819888 to 122819938 50 + TSS region transcription start site region 58702
Tssr58703 6 122819939 to 122819950 11 + TSS region transcription start site region 58703
Foxj2 6 122820184 to 122845366 25182 + protein coding gene forkhead box J2
Tssr62963 6 122820606 to 122820625 19 - TSS region transcription start site region 62963
Tssr58704 6 122820778 to 122820802 24 + TSS region transcription start site region 58704
Tssr62964 6 122820854 to 122820857 3 - TSS region transcription start site region 62964
Tssr58705 6 122824635 to 122824647 12 + TSS region transcription start site region 58705
Cpgi17957 6 122826379 to 122826676 297 CpG island CpG island 17957
Tssr58706 6 122826616 to 122826656 40 + TSS region transcription start site region 58706
Tssr58707 6 122826666 to 122826681 15 + TSS region transcription start site region 58707
Tssr58708 6 122826696 to 122826704 8 + TSS region transcription start site region 58708